TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0106.7.5
         (63 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC212585                                                               45  7e-12
TC205178 similar to GB|AAN13491.1|23170948|AE003688 CG6584-PE {D...    26  4.7
TC218591 weakly similar to UP|O65896 (O65896) Cytidine deaminase...    25  6.1
TC220393 similar to PIR|S67495|S67495 huntingtin-associated prot...    25  7.9
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A...    25  7.9

>TC212585 
          Length = 1016

 Score = 44.7 bits (104), Expect(2) = 7e-12
 Identities = 17/26 (65%), Positives = 24/26 (91%)
 Frame = +2

Query: 1   QFLNDLEENPDLRFNLSLYQNIEFQP 26
           QF+ DLEENP++RFN+SLY+N E++P
Sbjct: 545 QFIQDLEENPEMRFNISLYRNKEYKP 622



 Score = 40.4 bits (93), Expect(2) = 7e-12
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +1

Query: 34  DGEELPSVPLEELLADLELGEDEDEEDFM 62
           DG++  SVPLEELLADL+L E EDEED M
Sbjct: 628 DGDDX-SVPLEELLADLDLSEHEDEEDNM 711


>TC205178 similar to GB|AAN13491.1|23170948|AE003688 CG6584-PE {Drosophila
           melanogaster;} , partial (7%)
          Length = 769

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = -3

Query: 18  LYQNIEFQPSEMASVTDGEELPSVPLE 44
           LY +I+F   E +    G E PS+PL+
Sbjct: 269 LYPSIQFLSGEGSETARGRE*PSIPLQ 189


>TC218591 weakly similar to UP|O65896 (O65896) Cytidine deaminase 1
           (At2g19570) , partial (52%)
          Length = 824

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (64%)
 Frame = +1

Query: 1   QFLNDLEENPDLRFNLSLYQNIEFQP 26
           QFL +L + PD++  ++ ++N  F P
Sbjct: 133 QFLQELRDAPDIQILITSHKNPHFSP 210


>TC220393 similar to PIR|S67495|S67495 huntingtin-associated protein HAP1-A -
           rat {Rattus norvegicus;} , partial (5%)
          Length = 872

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 36  EELPSVPLEELLAD-LELGEDEDEED 60
           E++ S  ++E +A  +++GE++DEED
Sbjct: 205 EQIESTEMDEAMAKAVDIGENDDEED 282


>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
           thaliana;} , partial (46%)
          Length = 902

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 15/43 (34%), Positives = 24/43 (54%)
 Frame = +2

Query: 18  LYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEED 60
           L + +E    ++    D EE  SV  +E++ D E  EDE+E+D
Sbjct: 239 LSEQVEENEVKVLVEEDDEEYESV--DEVVDDAEDDEDEEEDD 361


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.310    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,955,554
Number of Sequences: 63676
Number of extensions: 17659
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of query: 63
length of database: 12,639,632
effective HSP length: 39
effective length of query: 24
effective length of database: 10,156,268
effective search space: 243750432
effective search space used: 243750432
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)