BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.4
(423 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216067 weakly similar to UP|RH2A_ARATH (Q9ZT50) RHA2a protein ... 38 0.008
TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial ... 36 0.029
AW186052 similar to PIR|T11846|T118 pathogenesis-related protein... 35 0.049
TC216776 similar to UP|Q75WV0 (Q75WV0) ALG2-interacting protein ... 34 0.14
BQ742294 33 0.24
TC219461 homologue to UP|Q9AR19 (Q9AR19) Histone acetyltransfera... 33 0.24
TC205427 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, part... 33 0.32
TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast... 33 0.32
TC226503 similar to UP|Q6ILL4 (Q6ILL4) HDC09080, partial (6%) 32 0.41
TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 32 0.41
TC216068 similar to UP|Q9ZU51 (Q9ZU51) RING-H2 finger protein RH... 32 0.41
TC219633 weakly similar to UP|Q9FH68 (Q9FH68) Arabidopsis thalia... 32 0.54
BF070827 32 0.54
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ... 32 0.70
TC233874 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-ric... 32 0.70
TC230731 31 0.92
TC225153 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S... 31 1.2
BG043254 31 1.2
TC205426 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, part... 31 1.2
TC227593 similar to GB|BAC42746.1|26451290|AK118120 protein tran... 30 1.6
>TC216067 weakly similar to UP|RH2A_ARATH (Q9ZT50) RHA2a protein (RING-H2
zinc finger protein), partial (37%)
Length = 733
Score = 38.1 bits (87), Expect = 0.008
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +1
Query: 110 PDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSA 169
PD + P A ++ + PPP T+ P + + A + SP A +A
Sbjct: 262 PDLSCSPISSPSAANSSTITTAPPPATTTTTTTTPASCARPPSRTATRSACSPAATSSTA 441
Query: 170 SSKTAASSHTSSERLSALLVEDPLSIFQS 198
+ TA S+ TSS SA L P S + S
Sbjct: 442 DASTAGSTTTSSTAHSAALRSSPTSAWHS 528
>TC213991 similar to UP|Q6H976 (Q6H976) STYLOSA protein, partial (12%)
Length = 440
Score = 36.2 bits (82), Expect = 0.029
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Frame = +3
Query: 135 RQLQTSPQQPRLSPQRIQQDARAALISPHAKG--GSASSKTAASSHTSSERLSALLVEDP 192
+Q Q QQ + PQ+ Q RA L++ A G G+ + A ++ ERL L DP
Sbjct: 63 QQQQPQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDP 242
Query: 193 L--SIFQSFFDGTLDLESPPRQAEIAETAQSGGVPDDSRIEAA 233
L + + F + P A I ++A + G P + A
Sbjct: 243 LDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGA 371
>AW186052 similar to PIR|T11846|T118 pathogenesis-related protein 3 - kidney
bean, partial (20%)
Length = 367
Score = 35.4 bits (80), Expect = 0.049
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASS 177
PPP+ L + +PPP P LS + ++ R L+SP+A G S+ A
Sbjct: 81 PPPRFPNLLDSSMQPPPPLYGAPQSDPSLSTRNFRRTKRR-LLSPNAPGKRCSAGRGAWD 257
Query: 178 HTSSERLSALLVEDP 192
+ +S L + +P
Sbjct: 258 YRNSVPLGGAFLAEP 302
>TC216776 similar to UP|Q75WV0 (Q75WV0) ALG2-interacting protein X, partial
(11%)
Length = 855
Score = 33.9 bits (76), Expect = 0.14
Identities = 25/79 (31%), Positives = 32/79 (39%), Gaps = 1/79 (1%)
Frame = +3
Query: 76 SNFPPQDMQNLPSPAREENILHDEVQGGEDPIIQPD-QVIGVMPPPKADVLASAHSEPPP 134
SN+P QN SP + + + + P+ QP G PPP A H PPP
Sbjct: 135 SNYPSVGSQNQRSPTQTDPA-RPQAPYYQQPVEQPPVPPYGHHPPPPYGGPAQHHQPPPP 311
Query: 135 RQLQTSPQQPRLSPQRIQQ 153
+ S P PQ QQ
Sbjct: 312 YHIPPSSTAPYPPPQVHQQ 368
>BQ742294
Length = 422
Score = 33.1 bits (74), Expect = 0.24
Identities = 24/85 (28%), Positives = 35/85 (40%), Gaps = 1/85 (1%)
Frame = +3
Query: 119 PPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASSH 178
PP + + + PR+ S +P L Q ARA S A GGS SS
Sbjct: 96 PPSSSSSPLSPAWAHPRRPTHSSLEPGLPASAAQGLARAVFWSGSAAGGSESSSPTTRGF 275
Query: 179 TSSERLSALLVE-DPLSIFQSFFDG 202
S + L+ D + + ++FF G
Sbjct: 276 VGSHLVDKLITRGDDIIVIENFFTG 350
>TC219461 homologue to UP|Q9AR19 (Q9AR19) Histone acetyltransferase GCN5
(At3g54610) (Expressed protein), partial (12%)
Length = 853
Score = 33.1 bits (74), Expect = 0.24
Identities = 44/180 (24%), Positives = 72/180 (39%), Gaps = 7/180 (3%)
Frame = +1
Query: 90 AREENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQPRLSPQ 149
A+E+N + GG + Q P P ASA S R+L + P P
Sbjct: 91 AKEQNPKKMDFHGGGPLRSRSSQ----SPSPSHSASASATSSIHKRKLVSEDHAPPFPPS 258
Query: 150 RIQQDARAALISPHAKGGSASSKTAASSHTSSERLSALLVEDPLSIFQSFFDGTLDLESP 209
D R ++ + S S++ A S + SE A++ +D + +D D +S
Sbjct: 259 SFSADTRDGALTSNDDLESISAR-GADSDSDSESEDAVVDDD-----EDDYDNDNDNDSS 420
Query: 210 PRQAEIAETAQSGGVPDDSRI--EAALVKLKGL--VFDAGFIGS---VRVNPQLGQEVKE 262
R + + P ++++ E + VK++ DAG +GS P G VKE
Sbjct: 421 MRTFTASRLSNPPSAPRNTKLKTENSTVKIENSDGAKDAGAVGSGAAAAAGPVPGIVVKE 600
>TC205427 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (71%)
Length = 1375
Score = 32.7 bits (73), Expect = 0.32
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +2
Query: 107 IIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQPRLSP 148
I P + + PPP LA+ S PPP + SP P L+P
Sbjct: 743 ITPPSATLFLPPPPLPAPLAATTSPPPPSRSAMSPTPPPLTP 868
>TC219129 weakly similar to UP|O23792 (O23792) CND41, chloroplast nucleoid
DNA binding protein precursor, partial (52%)
Length = 1348
Score = 32.7 bits (73), Expect = 0.32
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 116 VMPPPKADVLASAHSEPPPRQLQTS----PQQPRLSPQRIQQDARAALISPHA 164
V PPP A + S + PPP L ++ PQ P +P + + + L +P++
Sbjct: 896 VSPPPPAPLATSPSALPPPPMLTSNTLPFPQSPAKTPSTVSTSSASPLAAPNS 1054
>TC226503 similar to UP|Q6ILL4 (Q6ILL4) HDC09080, partial (6%)
Length = 1597
Score = 32.3 bits (72), Expect = 0.41
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +1
Query: 85 NLPSPAREENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQP 144
NLPS + N V ++Q + P K V A+ S+ PP T+P P
Sbjct: 4 NLPSTSSMANKFPSAVSAFPQSLVQSSNTVAQSPQWKNSVRATTTSQSPPSMASTTP--P 177
Query: 145 RLSPQRIQQDARAALISPHAKGGSASSKTAASS 177
QQ AR+ PH + A++ ++++
Sbjct: 178 SSVKNLPQQQARSQ--QPHTQISFATNPKSSAA 270
>TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (47%)
Length = 944
Score = 32.3 bits (72), Expect = 0.41
Identities = 36/137 (26%), Positives = 42/137 (30%)
Frame = +2
Query: 12 FSSKPPPIALSSSPSGLESSSSSLDSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKEC 71
+ S PPP S SP S + S P +Y+ S P + P PYY K
Sbjct: 290 YKSPPPP---SPSPPPPYYYKSPPPPSPSPPP----PYYYKSPPPPEKSPAPTPYYYKSP 448
Query: 72 RDNLSNFPPQDMQNLPSPAREENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSE 131
+ PP P P P P PPP A
Sbjct: 449 PPPSPSPPPPYYYKSPPP--------------PSPSPPPPYYYKAPPPPSA--------S 562
Query: 132 PPPRQLQTSPQQPRLSP 148
PPP SP P SP
Sbjct: 563 PPPAYYYKSPPPPSPSP 613
>TC216068 similar to UP|Q9ZU51 (Q9ZU51) RING-H2 finger protein RHA2b, partial
(22%)
Length = 1060
Score = 32.3 bits (72), Expect = 0.41
Identities = 25/93 (26%), Positives = 34/93 (35%)
Frame = +1
Query: 106 PIIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAK 165
P + I PPP ++ + PP R A + SP A
Sbjct: 331 PSVANSSTITTAPPPATTTTPASCARPPSR------------------TATRSACSPAAT 456
Query: 166 GGSASSKTAASSHTSSERLSALLVEDPLSIFQS 198
+A + TA S+ TSS SA L P S + S
Sbjct: 457 SSTADASTAGSTTTSSTAHSAALRSSPTSAWHS 555
>TC219633 weakly similar to UP|Q9FH68 (Q9FH68) Arabidopsis thaliana genomic
DNA, chromosome 5, TAC clone:K16E1, partial (81%)
Length = 1009
Score = 32.0 bits (71), Expect = 0.54
Identities = 24/112 (21%), Positives = 48/112 (42%)
Frame = +1
Query: 302 QSIETKKAQVASNTNGLLPAKEEVLKLTARRTLIAAELSSVDARLDELHREVARLEKQKA 361
+ +E K Q + +G + EE+ + R + AELS +++ L ++V E
Sbjct: 373 KGMEAVKKQTSGTEDGKVANSEEIKSVEEERARLRAELSRLESELQSKTKDVDGAE---- 540
Query: 362 MLIDEGPAVNSRLNTLAAECTGVMLSTSQLSKEVAAEQRMKQSLDCRIAAAG 413
+ + L + G +L +L +E + QSLD +++ +G
Sbjct: 541 ----------ANIAALRKQSEGFLLEYDRLLEENQNLRNQLQSLDRKLSHSG 666
>BF070827
Length = 410
Score = 32.0 bits (71), Expect = 0.54
Identities = 30/122 (24%), Positives = 40/122 (32%)
Frame = +1
Query: 13 SSKPPPIALSSSPSGLESSSSSLDSTESDPVWDKLTFYFNSKPIAWQHPGCEPYYTKECR 72
S+KP PI S SP+ T + P W S P + P C
Sbjct: 112 STKPHPIITSFSPT-----------TSNTPTWPPSFATTRSPPTTTRPP-------LSCS 237
Query: 73 DNLSNFPPQDMQNLPSPAREENILHDEVQGGEDPIIQPDQVIGVMPPPKADVLASAHSEP 132
S+ PP + P+ + P+ P Q + PPP L S P
Sbjct: 238 TTTSSSPPPPLPPTPNSST-------------CPLTPPRQTTSLTPPPSNLSLPSVALPP 378
Query: 133 PP 134
PP
Sbjct: 379 PP 384
>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
(Corresponding sequence ZK643.8), partial (7%)
Length = 762
Score = 31.6 bits (70), Expect = 0.70
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 117 MPPPKADVLASAHSEPPPRQLQTSPQQP---RLSPQRI 151
+PPP+ V +PP +QLQ PQQP L+PQ++
Sbjct: 144 LPPPQPPV--QQQQQPPQQQLQQPPQQPPQQHLAPQQL 251
>TC233874 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (10%)
Length = 427
Score = 31.6 bits (70), Expect = 0.70
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 15/81 (18%)
Frame = +2
Query: 118 PPPKADVLASAHSEPPPRQ---------LQTSPQQPRLSPQRIQQDA------RAALISP 162
PPP + AS S PP R L SP++P SP + R P
Sbjct: 95 PPPTTTIAASPPSSPPQRSSL*PFTISTLSHSPRRPSSSPATSSPPSTSSPPRRRLCPPP 274
Query: 163 HAKGGSASSKTAASSHTSSER 183
H GSA+S SS +S++R
Sbjct: 275 H---GSATSTPRCSSFSSAKR 328
>TC230731
Length = 1006
Score = 31.2 bits (69), Expect = 0.92
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1
Query: 105 DPIIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSP---QQPRLSPQRIQQDARAALIS 161
+PII P+ + PP A + PPP L P +P P+ + RA S
Sbjct: 16 EPIINPNPTPALWPPSTKSKTAFLPTIPPPLNLPPPPPTSPRPMPPPRSGGRGGRATACS 195
Query: 162 PHAKGGSASSKTAASSHTSSER 183
+ S S+ ++A+ +SS R
Sbjct: 196 ASSCRCSRSAASSAARGSSSRR 261
>TC225153 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 778
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/79 (32%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Frame = +2
Query: 126 ASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALIS------PHAKGGSASSK-TAASSH 178
A+ H+EP + S + R + +R A++ P A G+ASS+ TAA S
Sbjct: 50 ATQHNEPNQQCRSRSLSRSRNTGKRRWSRCSASVARRRRWP*PTASAGAASSRSTAAPSS 229
Query: 179 TSSERLSALLVEDPLSIFQ 197
+SS R SAL P S ++
Sbjct: 230 SSSRRSSALRPSSPSSCWE 286
>BG043254
Length = 421
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 118 PPPKADVLASAHSEPPPRQL-QTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAAS 176
PP L H PPPR L Q+ P P SP + ++ SP + SASS + +
Sbjct: 41 PPTTLPPLRPPHPPPPPRPLPQSHPPPPPPSPTS-KTSTTSSSQSPKSSAASASSSSRSR 217
Query: 177 S 177
S
Sbjct: 218 S 220
>TC205426 similar to UP|Q94A43 (Q94A43) AT4g36780/C7A10_580, partial (71%)
Length = 1303
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 107 IIQPDQVIGVMPPPKADVLASAHSEPPPRQLQTSPQQPRLSPQR 150
I P + + PPP+ A+ PPP + TSP P +P R
Sbjct: 628 ISTPSATLFLPPPPRPAPRAATTLPPPPSRSATSPTPPPWTPPR 759
>TC227593 similar to GB|BAC42746.1|26451290|AK118120 protein transport
protein subunit - like {Arabidopsis thaliana;} , partial
(76%)
Length = 515
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 118 PPPKADVLASAHSEPPPRQLQTSPQQPRLSPQRIQQDARAALISPHAKGGSASSKTAASS 177
PPP V+ASA + PP ++ + I +A+ P AS+ +A+S
Sbjct: 161 PPPACAVVASAEEQAPPPSVEAPAPEEATCCGSILTTLQASRSPPRWCSS*ASASSASSP 340
Query: 178 HTSSERLSALLV 189
++S S +V
Sbjct: 341 RSTSSASSTAIV 376
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.128 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,880,873
Number of Sequences: 63676
Number of extensions: 281835
Number of successful extensions: 2468
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2408
length of query: 423
length of database: 12,639,632
effective HSP length: 100
effective length of query: 323
effective length of database: 6,272,032
effective search space: 2025866336
effective search space used: 2025866336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0106.4