BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0105.6
(574 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228296 similar to UP|O81035 (O81035) Expressed protein (Pseudo... 304 6e-83
TC226492 homologue to UP|O81035 (O81035) Expressed protein (Pseu... 268 5e-72
TC226490 similar to UP|O81035 (O81035) Expressed protein (Pseudo... 241 8e-64
TC230545 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator... 206 2e-53
TC229396 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-re... 156 3e-38
BM309528 similar to GP|10281006|dbj pseudo-response regulator 5 ... 154 1e-37
BQ611989 similar to GP|10281004|db pseudo-response regulator 7 {... 128 8e-30
BG882555 similar to GP|10281006|dbj pseudo-response regulator 5 ... 110 2e-24
BF070582 similar to GP|10281006|dbj pseudo-response regulator 5 ... 105 7e-23
BF424444 similar to GP|10281004|dbj pseudo-response regulator 7 ... 101 1e-21
TC229109 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator... 79 6e-15
AW279415 weakly similar to GP|10281006|dbj pseudo-response regul... 76 5e-14
AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidops... 74 2e-13
TC226682 similar to UP|O80366 (O80366) Responce reactor4 (AT3g57... 73 4e-13
TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protei... 70 3e-12
TC222281 similar to UP|Q6LA43 (Q6LA43) Pseudo-response regulator... 70 3e-12
TC221088 similar to UP|Q71BZ3 (Q71BZ3) Type-A response regulator... 69 7e-12
TC212083 similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator... 69 7e-12
TC227924 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator... 69 7e-12
TC229270 similar to PIR|T48853|T48853 response reactor 3 [import... 65 1e-10
>TC228296 similar to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (14%)
Length = 1371
Score = 304 bits (779), Expect = 6e-83
Identities = 172/304 (56%), Positives = 204/304 (66%), Gaps = 39/304 (12%)
Frame = +3
Query: 290 SFHDGSTAKFEFDTQLELSTRGDFPAS------EERLMLNHTNASAFSQYSSSKLF---- 339
SF G+TAKF+FDTQLELS R DFP S +ER +LNH+NASAFS+YS+SKL
Sbjct: 9 SFSSGNTAKFDFDTQLELSLRRDFPGSSCKAAFKERQILNHSNASAFSRYSNSKLLQPLF 188
Query: 340 -------------SENSPHESHELCENTNISHRYGGKNQNHNPENTNSMVIGQSGQVKTK 386
S+NS HES +L +NT+ SH+Y K+QN E + VIGQSGQV K
Sbjct: 189 PTPSTISAKLTNASQNS-HESLKLSKNTSTSHQYSEKSQNQE-EKIITSVIGQSGQVDPK 362
Query: 387 FPNSQLGFFPATGVSFDNVSTGDGDVFPSMLYTQL------TPKSVCQKESSPFPTSTSS 440
PNSQLG FPATGV+ D+ S G+G+VFPS LY + TPKSVCQKESSPFPTSTSS
Sbjct: 363 LPNSQLGLFPATGVTSDHKSKGNGNVFPSKLYAKSGVHPISTPKSVCQKESSPFPTSTSS 542
Query: 441 QSNNESMKSEHHHWSDDATFTSDKCENDQSNLDCAVNDSSATRQSSSTSFYHDSANHSSS 500
QSN +S SE HHW +DAT SD+ NDQSNL+C +DS A QS+ SF+HD+ANH+SS
Sbjct: 543 QSNPQSHNSERHHWLEDATHASDQNVNDQSNLECETHDSPAASQSAGPSFFHDTANHNSS 722
Query: 501 GVNGSGGSGSDGNVTSTGVD----------DELRGTDSHRTSQREAALTKFRLKRKDRCY 550
GV S G+ + V + D GTDSHRTSQREAALTKFRLKRKDRCY
Sbjct: 723 GVYRSDGNATSAKVAKESHEIFIDSGQRSYDGFIGTDSHRTSQREAALTKFRLKRKDRCY 902
Query: 551 DKKV 554
+KKV
Sbjct: 903 EKKV 914
>TC226492 homologue to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (9%)
Length = 1700
Score = 268 bits (685), Expect = 5e-72
Identities = 205/533 (38%), Positives = 252/533 (46%), Gaps = 113/533 (21%)
Frame = -2
Query: 135 QHVWRRQTITKPPQKLTLAHNNKLDAAIENKPASNDSTGSVASTQKNNETSE----AQST 190
QHVWRR I+ P Q T + KL A E+ ASN S+GSVAS++KNNE SE AQST
Sbjct: 1699 QHVWRRHAISTPTQNTTFSPK-KLKTASEDNSASNKSSGSVASSKKNNECSERLSEAQST 1523
Query: 191 CTSPILGAESGSMENMQDATQLK----------------------------------SSS 216
CTSPI AES +ENMQD Q SS
Sbjct: 1522 CTSPIFEAESTYVENMQDVPQYVHCQVMQTLVQSTCTSPIFEAKSTYVENMQDVPPLKSS 1343
Query: 217 NLSDIDAVKQDKSTQLEMESPKHNSEA--------------------------------- 243
L+ ID VK +K Q E ES +HN E
Sbjct: 1342 KLNKIDMVKHEKFAQFERESAEHNDETEDKSVTIVSDAARCDKTSELTELRPEQDCGVAE 1163
Query: 244 -----------GELSKGNPHISTEIRGCSDELLEPSSGAMDLIAAFGNLPKRTIGNHSFH 292
EL N H+ T + GC+ E ++PS GA+DLIA FGNLPK N S +
Sbjct: 1162 PETENEDEILKSELDGDNSHV-TILHGCNAEQVKPSKGAIDLIATFGNLPKHPNENCSLN 986
Query: 293 DGSTAKFEFDTQLELSTRGDFPAS---------EERLMLNHTNASAFSQYSSSKLFSENS 343
G+T KF+ +TQLELS R DFP S EE LNH+N SAFS L +S
Sbjct: 985 GGNTTKFDCETQLELSLRSDFPGSSGKQASESTEESQRLNHSNTSAFSW*VQCFLDFFSS 806
Query: 344 PHESHELCENTNISHRYGGKNQNHNPENTNSMVIGQSGQVKTKFPNSQLGFFPATGVSFD 403
++ + QN P N +S+ +GV
Sbjct: 805 *NDIY----------------QNQMPYNISSV----------------------SGVISK 740
Query: 404 NVSTGDGDVFPSMLYTQ------LTPKSVCQKESSPFPTSTSSQSNNESMKSEH-HHWSD 456
S G G VF S+ Y Q L+PK VCQ ESSPFPTSTSSQSN ES S+ H S+
Sbjct: 739 LKSEGHGHVFTSVFYAQSGIHPMLSPKPVCQNESSPFPTSTSSQSNPESHCSDQPHDCSN 560
Query: 457 DATFTSDKCENDQSNLDCAVNDSSATRQSSSTSFYHDSANHSSSGVNGSGGSGSDGNVTS 516
DAT D+ D ++ D A ++S A QS+ + HD+ANH +S GS SG+DG+ TS
Sbjct: 559 DAT-CLDQNVKDNTDSDHARHESPAADQSAGNNLCHDAANHVNSSAYGSMDSGNDGHATS 383
Query: 517 TGVD---------------DELRGTDSHRTSQREAALTKFRLKRKDRCYDKKV 554
V D R TDSHR+SQREAAL KFRLKRK+RC++KKV
Sbjct: 382 AIVSKNTSDGFSDSGCHNYDGFRVTDSHRSSQREAALVKFRLKRKERCFEKKV 224
>TC226490 similar to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (9%)
Length = 1411
Score = 241 bits (614), Expect = 8e-64
Identities = 155/339 (45%), Positives = 191/339 (55%), Gaps = 47/339 (13%)
Frame = +1
Query: 263 ELLEPSSGAMDLIAAFGNLPKRTIGNHSFHDGSTAKFEFDTQLELSTRGDFP-------- 314
E ++PS GA+DLIA GNLPK N S + G+T KF+ +TQLELS R DFP
Sbjct: 1 ERVKPSKGAIDLIATVGNLPKHLDENCSLNGGNTTKFDCETQLELSLRSDFPGSSGNQAS 180
Query: 315 -ASEERLMLNHTNASAFSQYSSSKLFSEN----------------SPHESHELCENTNIS 357
A+EE LNH+N SAFS YS+SKL + HESH+L T+ +
Sbjct: 181 EATEESQRLNHSNTSAFSWYSNSKLLQPHFSTPSITFPEVNNLSWDSHESHKLSGITSGN 360
Query: 358 HRYGGKNQNHNPENTNSMVIGQSGQVKTKFPNSQLGFFPATGVSFDNVSTGDGDVFPSML 417
+YGG NQN EN VI Q GQV K NSQ G P +GV + S G G+VF S+
Sbjct: 361 CQYGGSNQNL--ENMIGTVICQYGQVTPKLSNSQCGLLPVSGVISNLKSEGHGNVFTSLF 534
Query: 418 YTQL------TPKSVCQKESSPFPTSTSSQSNNESMKSEH-HHWSDDATFTSDKCENDQS 470
Y Q +PK VCQ ESSPFPTSTS+QS ES S+ H S+DAT + + D +
Sbjct: 535 YAQSGIHPMSSPKPVCQNESSPFPTSTSTQSYPESHNSDQLHDCSNDATCLNQNVK-DNT 711
Query: 471 NLDCAVNDSSATRQSSSTSFYHDSANHSSSGVNGSGGSGSDGNVTSTGVD---------- 520
+ D A +DS QS+ S HD+ANH +S GS SG+DGN TS V
Sbjct: 712 DSDHARHDSPVADQSAGNSLCHDAANHVNSSAYGSMDSGNDGNATSAIVSKNAPDGFSDS 891
Query: 521 -----DELRGTDSHRTSQREAALTKFRLKRKDRCYDKKV 554
D R TD HR+SQREA L KFRLKRK+RC++KKV
Sbjct: 892 GCHNYDGFRVTDPHRSSQREAVLVKFRLKRKERCFEKKV 1008
>TC230545 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator 5, partial
(19%)
Length = 469
Score = 206 bits (525), Expect = 2e-53
Identities = 104/121 (85%), Positives = 111/121 (90%)
Frame = +3
Query: 11 ERILPQTALRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHDIDLILT 70
ER LP+ LR+LLVEADDSTRQIIAALLRKC YKV A DGLKAWETLKNKA D+DLILT
Sbjct: 105 ERFLPRMVLRVLLVEADDSTRQIIAALLRKCGYKVVAFCDGLKAWETLKNKAFDLDLILT 284
Query: 71 EVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVRRNEL 130
EVDLPSISGFSLLTLI +HD CK+IPVIMMSS+DSVSMVFKCMLKGAADFLIKPVR+NEL
Sbjct: 285 EVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVFKCMLKGAADFLIKPVRKNEL 464
Query: 131 R 131
R
Sbjct: 465 R 467
>TC229396 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-response
regulator 3), partial (28%)
Length = 1013
Score = 156 bits (394), Expect = 3e-38
Identities = 72/116 (62%), Positives = 92/116 (79%)
Frame = +1
Query: 25 EADDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHDIDLILTEVDLPSISGFSLLT 84
E DDSTR ++ ALL+ CSYKV AV +GL+AW+ L++ + IDL+LTEV +P +SG LL
Sbjct: 1 EDDDSTRHVVRALLQNCSYKVTAVSNGLQAWKVLEDPENGIDLVLTEVAMPILSGIGLLC 180
Query: 85 LITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVRRNELRNLWQHVWRR 140
I H K+IPVIMMSS+DS+ +VFKC+ KGA DFL+KP+RRNEL+NLWQHVWRR
Sbjct: 181 KIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRR 348
>BM309528 similar to GP|10281006|dbj pseudo-response regulator 5 {Arabidopsis
thaliana}, partial (14%)
Length = 431
Score = 154 bits (388), Expect = 1e-37
Identities = 80/110 (72%), Positives = 92/110 (82%), Gaps = 3/110 (2%)
Frame = +1
Query: 1 MQTPNDNGDV---ERILPQTALRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWET 57
M T N N +V ER LP+ LR+LLVEAD STRQIIAALLRKCSY V AV DGLKAWET
Sbjct: 100 MTTENSNAEVVRWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWET 279
Query: 58 LKNKAHDIDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVS 107
LK KA ++DLILTEV+LP+ISGF+LL+LI +HD CK+IPVIMMSS+DSVS
Sbjct: 280 LKKKAPELDLILTEVELPAISGFALLSLIMEHDICKNIPVIMMSSHDSVS 429
>BQ611989 similar to GP|10281004|db pseudo-response regulator 7 {Arabidopsis
thaliana}, partial (15%)
Length = 460
Score = 128 bits (321), Expect = 8e-30
Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 37/151 (24%)
Frame = +2
Query: 27 DDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHDIDLILTEVDLPSISGFSLLTLI 86
DDSTR ++ ALLR CSY+V +GL+AW+ L++ + IDL+LTEV +P +SG LL I
Sbjct: 2 DDSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKI 181
Query: 87 TDHDFCKHIPVI-------------------------------------MMSSNDSVSMV 109
H K+IP++ +MSS+DS+ +V
Sbjct: 182 MGHKTRKNIPLVSKFFQLLIYVWFEAFLFLISCCKRATLFYGF*WDWSAVMSSHDSMGLV 361
Query: 110 FKCMLKGAADFLIKPVRRNELRNLWQHVWRR 140
FKC+ KGA DFL+KP+R+NEL+NLWQHVWRR
Sbjct: 362 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 454
>BG882555 similar to GP|10281006|dbj pseudo-response regulator 5 {Arabidopsis
thaliana}, partial (10%)
Length = 411
Score = 110 bits (274), Expect = 2e-24
Identities = 54/68 (79%), Positives = 60/68 (87%)
Frame = +2
Query: 11 ERILPQTALRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHDIDLILT 70
E+ LP+ LR+LLVEADDSTRQIIAALLRKCSYKV AV DGLKAWE LK + H++DLILT
Sbjct: 206 EKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVVAVPDGLKAWELLKGRPHNVDLILT 385
Query: 71 EVDLPSIS 78
EVDLPSIS
Sbjct: 386 EVDLPSIS 409
>BF070582 similar to GP|10281006|dbj pseudo-response regulator 5 {Arabidopsis
thaliana}, partial (7%)
Length = 410
Score = 105 bits (261), Expect = 7e-23
Identities = 54/95 (56%), Positives = 68/95 (70%), Gaps = 3/95 (3%)
Frame = -2
Query: 98 IMMSSNDSVSMVFKCMLKGAADFLIKPVRRNELRNLWQHVWRRQTIT---KPPQKLTLAH 154
IMMSS DS+S V+KCML+GAAD+L+KP+R+NELRNLWQHVWRRQ+ T PQ ++A
Sbjct: 409 IMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVA- 233
Query: 155 NNKLDAAIENKPASNDSTGSVASTQKNNETSEAQS 189
K++A EN ASN S+G A Q+N E E S
Sbjct: 232 QQKVEATAENNAASNRSSGDAACIQRNMELIEKGS 128
>BF424444 similar to GP|10281004|dbj pseudo-response regulator 7 {Arabidopsis
thaliana}, partial (13%)
Length = 398
Score = 101 bits (251), Expect = 1e-21
Identities = 51/96 (53%), Positives = 69/96 (71%)
Frame = +2
Query: 11 ERILPQTALRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHDIDLILT 70
ER L +L++LLVE DDSTR ++ ALLR CSY+V +GL+AW+ L++ + IDLILT
Sbjct: 110 ERFLHIRSLKVLLVEYDDSTRHVVTALLRNCSYEVIDAANGLQAWKILEDLTNHIDLILT 289
Query: 71 EVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSV 106
EV +P +SG LL I H K+IPV+MMSS+DS+
Sbjct: 290 EVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSHDSM 397
>TC229109 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator 5, partial
(7%)
Length = 1011
Score = 79.0 bits (193), Expect = 6e-15
Identities = 62/179 (34%), Positives = 85/179 (46%), Gaps = 20/179 (11%)
Frame = +2
Query: 396 PATGVSFDNVSTGDGDVFPSMLYTQLTPKSVCQKES-----SPFPTSTSSQSNNESMKSE 450
P GV F+++ T G V PS+ +TQ P ++ S F + QSN + SE
Sbjct: 113 PVKGVRFNDLCTAYGSVLPSVFHTQSGPPAMPSPNSVVLLEPNFQVNAFYQSNMKESSSE 292
Query: 451 HHHWS--DDATFTSDKCENDQSNLDCAVND----SSATRQSSSTSFYHDSANHSSSGVNG 504
+ S + T + Q + D S T QS S+SF + +A+H +S G
Sbjct: 293 QLYESRGPNGNTTQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHLNSIGYG 472
Query: 505 SGGSGSDGNVTSTGV---------DDELRGTDSHRTSQREAALTKFRLKRKDRCYDKKV 554
S GS NV +D +SHR+ QREAAL KFRLKRK+RCY+KKV
Sbjct: 473 SN-CGSSSNVDQVNTVWAASEGKHEDLTNNANSHRSIQREAALNKFRLKRKERCYEKKV 646
>AW279415 weakly similar to GP|10281006|dbj pseudo-response regulator 5
{Arabidopsis thaliana}, partial (8%)
Length = 187
Score = 75.9 bits (185), Expect = 5e-14
Identities = 36/59 (61%), Positives = 47/59 (79%)
Frame = +2
Query: 50 DGLKAWETLKNKAHDIDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSM 108
DGLKAW+TLK KA ++DLI TEV+LP ISGF+L + I +HD K+IP+I MS +D+ SM
Sbjct: 11 DGLKAWQTLKKKAPELDLISTEVELPPISGFALFSWIMEHDIGKNIPLIDMSCHDAASM 187
>AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidopsis
thaliana}, partial (14%)
Length = 408
Score = 73.6 bits (179), Expect = 2e-13
Identities = 39/99 (39%), Positives = 57/99 (57%)
Frame = +3
Query: 41 CSYKVAAVRDGLKAWETLKNKAHDIDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMM 100
C Y+V + A L+ + D++L++V +P + GF LL I +PVIMM
Sbjct: 21 CLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHI---GLEMDLPVIMM 191
Query: 101 SSNDSVSMVFKCMLKGAADFLIKPVRRNELRNLWQHVWR 139
S++D +V K + GA D+LIKPVR L+N+WQHV R
Sbjct: 192 SADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVR 308
>TC226682 similar to UP|O80366 (O80366) Responce reactor4
(AT3g57040/F24I3_120), partial (60%)
Length = 1343
Score = 72.8 bits (177), Expect = 4e-13
Identities = 60/251 (23%), Positives = 119/251 (46%), Gaps = 23/251 (9%)
Frame = +3
Query: 16 QTALRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETL----------------- 58
++ +L V+ R++I LLR SY+V V G KA E L
Sbjct: 372 ESQFHVLAVDDSLIDRKLIERLLRTSSYEVTTVDSGSKALEFLGLCENDESNPSTPYVCP 551
Query: 59 -KNKAHDIDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGA 117
++ +++L++T+ +P ++G+ LL I + ++IPV++MSS + S + +C+ +GA
Sbjct: 552 NNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGA 731
Query: 118 ADFLIKPVRRNELRNLWQHVWRRQTITKPPQKLTLAHNNKLDAAIENKPASNDSTGSVAS 177
+F +KPVR ++L L H+ ++T K ++ T+ L+ + +P
Sbjct: 732 EEFFLKPVRLSDLNKLKPHM--KKTKLKDQKQGTVEKLEDLEVQ-QQQP----------Q 872
Query: 178 TQKNNETSEAQSTCTSPILGAESGSMENMQDATQ-----LKSSSNLSDIDAVKQDKSTQL 232
Q + + Q+ + +L ES S + Q + L+ ++N S ++Q S +
Sbjct: 873 QQIIIQNEQQQAPKSRDLLQPESESHPHAQPTIEQQQQSLQQANNNSKRKTMEQGLSPET 1052
Query: 233 EMESPKHNSEA 243
+ P+++ A
Sbjct: 1053DRTRPRYSGIA 1085
>TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protein, partial
(48%)
Length = 877
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/188 (27%), Positives = 96/188 (50%), Gaps = 15/188 (7%)
Frame = +2
Query: 23 LVEADDST--RQIIAALLRKCSYKVAAVRDGLKAWETL----KNKAHD---------IDL 67
++ DDST R++I LL+ + KV AV GL+A + L + K +DL
Sbjct: 137 VLAVDDSTVDRKVIEHLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFVGLKVDL 316
Query: 68 ILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVRR 127
I+T+ +P ++G+ LL I + K PV++MSS + + + +C+ +GA DF++KPV+
Sbjct: 317 IITDYCMPGMTGYELLKRIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKL 496
Query: 128 NELRNLWQHVWRRQTITKPPQKLTLAHNNKLDAAIENKPASNDSTGSVASTQKNNETSEA 187
++++ L ++ ++ + Q+ N + ++ S S S++S+ S
Sbjct: 497 SDVKRLKDYMTTKEVRGELSQEEREGINKR--KLLDTSDVSPSSPPSISSSPL---PSSL 661
Query: 188 QSTCTSPI 195
S SPI
Sbjct: 662 SSVIDSPI 685
>TC222281 similar to UP|Q6LA43 (Q6LA43) Pseudo-response regulator 2, partial
(30%)
Length = 843
Score = 69.7 bits (169), Expect = 3e-12
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +1
Query: 19 LRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKAHDIDLILTEVDLP-SI 77
LR+LL+E D S+ I L YKV+ D +A L + + + EV S+
Sbjct: 391 LRVLLLEGDSSSAAEIREQLEAMDYKVSTFYDENEALSALSSSPKGFHVAIVEVSTSCSL 570
Query: 78 SGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVRRNELRNLWQHV 137
GF L + K +P IM S + ++ + KC+ GA +FL KP+ ++L+N+WQHV
Sbjct: 571 GGFKFL------ENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHV 732
>TC221088 similar to UP|Q71BZ3 (Q71BZ3) Type-A response regulator, partial
(75%)
Length = 874
Score = 68.6 bits (166), Expect = 7e-12
Identities = 36/122 (29%), Positives = 70/122 (56%), Gaps = 9/122 (7%)
Frame = +3
Query: 21 ILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETL---------KNKAHDIDLILTE 71
+L V+ + R+++ LLR S KV +G +A E L N +++I+T+
Sbjct: 219 VLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNNMNGRSKVNMIITD 398
Query: 72 VDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVRRNELR 131
+P ++G+ LL I + K +PV++MSS + + + KC+ +GA F++KP++++++R
Sbjct: 399 YCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVR 578
Query: 132 NL 133
L
Sbjct: 579 KL 584
>TC212083 similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator, partial
(35%)
Length = 708
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/76 (44%), Positives = 51/76 (66%)
Frame = +1
Query: 66 DLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPV 125
D+++++V +P + GF LL I +PVIMMS++D S+V K + GA D+LIKPV
Sbjct: 13 DIVISDVHMPDMDGFKLLEHI---GLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPV 183
Query: 126 RRNELRNLWQHVWRRQ 141
R L+N+WQHV R++
Sbjct: 184 RIEALKNIWQHVVRKR 231
>TC227924 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator, partial
(50%)
Length = 994
Score = 68.6 bits (166), Expect = 7e-12
Identities = 42/146 (28%), Positives = 78/146 (52%), Gaps = 14/146 (9%)
Frame = +1
Query: 8 GDVERI-LPQTA----LRILLVEADDSTRQIIAALLRKCSYKVAAVRDGLKAWETLKNKA 62
GDV R LP+ L +L V+ R++I LL+ S KV V G +A + L
Sbjct: 160 GDVFRQGLPEVCAAGKLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDG 339
Query: 63 HD---------IDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCM 113
++LI+T+ +P ++G+ LL I + + +PV++MSS + ++ + C+
Sbjct: 340 EKSSIGLDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREVPVVVMSSENILTRIDSCL 519
Query: 114 LKGAADFLIKPVRRNELRNLWQHVWR 139
+GA +FL+KPV+ ++++ + + R
Sbjct: 520 EEGAEEFLLKPVKLSDVKRVTDFIMR 597
>TC229270 similar to PIR|T48853|T48853 response reactor 3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(62%)
Length = 752
Score = 64.7 bits (156), Expect = 1e-10
Identities = 40/145 (27%), Positives = 77/145 (52%), Gaps = 20/145 (13%)
Frame = +3
Query: 27 DDST--RQIIAALLRKCSYKVAAVRDGLKAWETL------------------KNKAHDID 66
DDS R +I LL+ S+ V AV G KA + L ++ +++
Sbjct: 6 DDSLIDRMLIERLLKTSSFHVTAVDSGSKALKFLGLVEEKRNEEPPPCIALESHQDVEVN 185
Query: 67 LILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVR 126
LI+T+ +P ++G+ LL I + K IPV++MSS + + + +C+ +GA +F +KPV+
Sbjct: 186 LIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPARINRCLEEGADEFFLKPVQ 365
Query: 127 RNELRNLWQHVWRRQTITKPPQKLT 151
++++ L H+ + + Q+++
Sbjct: 366 QSDVNKLRPHLMKSKVKDGEDQQIS 440
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,456,258
Number of Sequences: 63676
Number of extensions: 327887
Number of successful extensions: 1975
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 1779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of query: 574
length of database: 12,639,632
effective HSP length: 102
effective length of query: 472
effective length of database: 6,144,680
effective search space: 2900288960
effective search space used: 2900288960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0105.6