BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0104.7
(76 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234386 similar to PIR|T48087|T48087 transport inhibitor respon... 91 1e-19
TC225842 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor respo... 86 3e-18
AW755995 similar to PIR|T48087|T480 transport inhibitor response... 79 6e-16
TC225841 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor respo... 74 1e-14
BM094881 similar to PIR|T48087|T48 transport inhibitor response ... 66 4e-12
TC234752 weakly similar to UP|Q6TDU2 (Q6TDU2) Coronatine-insensi... 57 2e-09
TC221662 weakly similar to UP|Q6TDU2 (Q6TDU2) Coronatine-insensi... 55 9e-09
BF010034 similar to GP|13605655|gb| AT4g15470/dl3775w {Arabidops... 38 0.001
TC219443 37 0.002
TC211100 similar to GB|AAM91352.1|22137014|AY133522 At5g23340/MK... 36 0.004
BG726934 33 0.035
TC213427 UP|TBP_SOYBN (Q42808) TATA-box binding protein (TATA-bo... 30 0.17
AW508641 homologue to SP|Q42808|TF2D_ Transcription initiation f... 30 0.23
TC217564 UP|TBP_SOYBN (Q42808) TATA-box binding protein (TATA-bo... 30 0.23
BM094601 30 0.30
BM308009 similar to PIR|D86241|D862 protein T16B5.8 [imported] -... 28 0.86
TC205465 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g5... 27 1.9
TC205464 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g5... 27 1.9
TC205782 similar to UP|Q93WR8 (Q93WR8) MEK map kinase kinsae, pa... 26 3.3
TC223738 similar to UP|ELF3_ARATH (O82804) EARLY FLOWERING 3 pro... 26 3.3
>TC234386 similar to PIR|T48087|T48087 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (14%)
Length = 467
Score = 90.9 bits (224), Expect = 1e-19
Identities = 37/68 (54%), Positives = 51/68 (74%)
Frame = +1
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP+EVLE V + + +DR+++SLVCK WY ERW RR VF+GNCY+VSP ++ +R +
Sbjct: 220 FPEEVLEHVFSFIWNERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPLMVVKRFPEV 399
Query: 69 RSVTLKGK 76
RS+ LKGK
Sbjct: 400 RSIALKGK 423
>TC225842 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor response-like
protein (At3g26830), partial (54%)
Length = 1777
Score = 86.3 bits (212), Expect = 3e-18
Identities = 38/68 (55%), Positives = 51/68 (74%)
Frame = +1
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FPDEV+E + V S DR+++SLVCK WY ER +R+ VFIGNCYS++PE L +R +
Sbjct: 685 FPDEVIEHIFDYVVSHSDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQRFPGL 864
Query: 69 RSVTLKGK 76
+S+TLKGK
Sbjct: 865 KSLTLKGK 888
>AW755995 similar to PIR|T48087|T480 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana, partial (12%)
Length = 292
Score = 78.6 bits (192), Expect = 6e-16
Identities = 33/65 (50%), Positives = 46/65 (70%)
Frame = +2
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP+EVLE V + S +DR+++SLVCK WY +RW RR VF GNCY+VSP + +R +
Sbjct: 26 FPEEVLEHVFSFIWSERDRNAISLVCKSWYEIDRWCRRKVFEGNCYAVSPLMGIKRFPEL 205
Query: 69 RSVTL 73
+S+ L
Sbjct: 206KSIVL 220
>TC225841 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor response-like
protein (At3g26830), partial (10%)
Length = 848
Score = 74.3 bits (181), Expect = 1e-14
Identities = 32/56 (57%), Positives = 42/56 (74%)
Frame = +2
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRR 64
FPDEV+E + V S DR+++SLVCK WY ER +R+ VFIGNCYS++PE L +R
Sbjct: 677 FPDEVIEHIFDYVVSHSDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQR 844
>BM094881 similar to PIR|T48087|T48 transport inhibitor response protein
TIR1 [imported] - Arabidopsis thaliana, partial (23%)
Length = 420
Score = 65.9 bits (159), Expect = 4e-12
Identities = 26/45 (57%), Positives = 32/45 (70%)
Frame = +1
Query: 32 LVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIRSVTLKGK 76
LVCK WY ERW RR VF+GNCY+VSP + R +RS+ +KGK
Sbjct: 1 LVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSIAIKGK 135
>TC234752 weakly similar to UP|Q6TDU2 (Q6TDU2) Coronatine-insensitive 1,
partial (25%)
Length = 502
Score = 57.0 bits (136), Expect = 2e-09
Identities = 27/66 (40%), Positives = 40/66 (59%)
Frame = +2
Query: 11 DEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIRS 70
D VL+ V+ + KDR +VS VC+ WY + +R+ V I CY+ +P L RR ++ S
Sbjct: 47 DVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLES 226
Query: 71 VTLKGK 76
+ LKGK
Sbjct: 227 LKLKGK 244
>TC221662 weakly similar to UP|Q6TDU2 (Q6TDU2) Coronatine-insensitive 1,
partial (44%)
Length = 993
Score = 54.7 bits (130), Expect = 9e-09
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
A+ D VL+ V+ + KDR +VS VC+ Y + +R+ V I CY+ +P+ L RR
Sbjct: 53 ATRLSDVVLDCVMPYIHDSKDRDAVSQVCRRLYELDSLTRKHVTIALCYTTTPDRLRRRF 232
Query: 66 SNIRSVTLKGK 76
++ S+ LKGK
Sbjct: 233 PHLESLNLKGK 265
>BF010034 similar to GP|13605655|gb| AT4g15470/dl3775w {Arabidopsis
thaliana}, partial (7%)
Length = 338
Score = 37.7 bits (86), Expect = 0.001
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIR 69
PDE+L + + S+ R + SLVC W ER++R ++ SP + +S +
Sbjct: 125 PDELLIEIFRRLDSKSSRDAGSLVCTRWLRLERFTRAAISSPRVSPTSPPFTSMSASLFQ 304
Query: 70 SVTLKGK 76
S G+
Sbjct: 305 SPLTSGE 325
>TC219443
Length = 939
Score = 37.0 bits (84), Expect = 0.002
Identities = 19/53 (35%), Positives = 28/53 (51%)
Frame = +3
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILT 62
P+ ++ +L +K DR+SVSLVCK Y + R V +G + E LT
Sbjct: 354 PEHIVWEILSRLKKTSDRNSVSLVCKRLYYLDNAQRTFVRVGCGMDPADEALT 512
>TC211100 similar to GB|AAM91352.1|22137014|AY133522 At5g23340/MKD15_20
{Arabidopsis thaliana;} , partial (61%)
Length = 815
Score = 35.8 bits (81), Expect = 0.004
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 11 DEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSV 48
D+ L +LG V+S KD+ + LVCK W + R+ +
Sbjct: 94 DDELRSILGRVESEKDKETFGLVCKRWLRLQSTERKKL 207
>BG726934
Length = 387
Score = 32.7 bits (73), Expect = 0.035
Identities = 24/73 (32%), Positives = 37/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 2 ILNQASPFPDEVLERVLGMVK-SRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 60
IL++ DE+L R+L + S + R+S SLVCK W N + R++ + + V
Sbjct: 93 ILDRTLLLSDELLLRILSKLPDSSQQRNSNSLVCKRWLNLQGRLVRTLRVLDWSFVLSGR 272
Query: 61 LTRRSSNIRSVTL 73
L R N+ V L
Sbjct: 273 LINRFPNLNHVDL 311
>TC213427 UP|TBP_SOYBN (Q42808) TATA-box binding protein (TATA-box factor)
(TATA binding factor) (TATA sequence-binding protein)
(TBP) (Transcription initiation factor TFIID TBP
subunit), partial (13%)
Length = 421
Score = 30.4 bits (67), Expect = 0.17
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 7 SPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEIL 61
SP P V + G++K + V + K+W A +W RS+ +G+C S ++
Sbjct: 210 SPSPSSV---IFGLIKKIR----V*WLTKDWKGANQWIYRSILLGSCLPFSEYLI 353
>AW508641 homologue to SP|Q42808|TF2D_ Transcription initiation factor TFIID
(TATA-box factor) (TATA sequence-binding protein)
(TBP)., partial (12%)
Length = 442
Score = 30.0 bits (66), Expect = 0.23
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +2
Query: 25 KDRSSVSLVCKEWYNAERWSRRSVFIGNC 53
K ++ V + K+W A RW RS+ +G+C
Sbjct: 347 KKKNRV*WLTKDWKGANRWIYRSILLGSC 433
>TC217564 UP|TBP_SOYBN (Q42808) TATA-box binding protein (TATA-box factor)
(TATA binding factor) (TATA sequence-binding protein)
(TBP) (Transcription initiation factor TFIID TBP
subunit), complete
Length = 1194
Score = 30.0 bits (66), Expect = 0.23
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = +3
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNC 53
A P P+ L R L + K + V + K+W A RW RS+ +G+C
Sbjct: 120 ADPNPNPSL-RAL*FLS**KKKIRV*WLTKDWKGASRWIYRSILLGSC 260
>BM094601
Length = 429
Score = 29.6 bits (65), Expect = 0.30
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 11 DEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSV 48
DE+L+ + + S SSVSLVCK W R S S+
Sbjct: 27 DELLQEIFQKLPSSSS-SSVSLVCKRWLRLHRSSTTSL 137
>BM308009 similar to PIR|D86241|D862 protein T16B5.8 [imported] -
Arabidopsis thaliana, partial (16%)
Length = 428
Score = 28.1 bits (61), Expect = 0.86
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVF 49
PD +L+ +L + + +D SS + V K W ++ + R F
Sbjct: 42 PDAILQCILSRITNARDVSSCNCVSKRWKDSTPYIRTLYF 161
>TC205465 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g57790
{Arabidopsis thaliana;} , partial (15%)
Length = 490
Score = 26.9 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 7 SPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYN 39
S P E+LE +L + S D S+VCK W++
Sbjct: 180 SDLPTELLELILSRL-SLDDNVRASVVCKRWHS 275
>TC205464 weakly similar to GB|AAP42752.1|30984578|BT008739 At1g57790
{Arabidopsis thaliana;} , partial (17%)
Length = 756
Score = 26.9 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 7 SPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYN 39
S P E+LE +L + S D S+VCK W++
Sbjct: 184 SDLPTELLELILSRL-SLDDNVRASVVCKRWHS 279
>TC205782 similar to UP|Q93WR8 (Q93WR8) MEK map kinase kinsae, partial (91%)
Length = 1377
Score = 26.2 bits (56), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = +3
Query: 25 KDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIRS 70
K RSSV+ + W + R + R+ C+S E+L R +++ RS
Sbjct: 420 KSRSSVTWTMRTW*SVTRCTIRTAKSRCCWSSWTEVLWRGNTSRRS 557
>TC223738 similar to UP|ELF3_ARATH (O82804) EARLY FLOWERING 3 protein
(Nematode responsive protein), partial (9%)
Length = 426
Score = 26.2 bits (56), Expect = 3.3
Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Frame = -1
Query: 44 SRRSVFIGNCYSVSPEI-LTRRSSNI 68
S+ S+ IGNC S PE+ LT S+NI
Sbjct: 372 SKHSLLIGNCSSCFPEMFLTYYSNNI 295
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,562,779
Number of Sequences: 63676
Number of extensions: 42850
Number of successful extensions: 271
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of query: 76
length of database: 12,639,632
effective HSP length: 52
effective length of query: 24
effective length of database: 9,328,480
effective search space: 223883520
effective search space used: 223883520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0104.7