BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.5
(275 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequen... 52 2e-07
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 52 2e-07
TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 45 5e-05
TC233976 42 3e-04
TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, pa... 42 4e-04
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p... 41 5e-04
TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana geno... 39 0.002
TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G... 39 0.003
TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like prot... 39 0.003
TC227589 38 0.006
TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L1... 38 0.006
TC232026 34 0.082
TC224993 homologue to UP|Q9W3A9 (Q9W3A9) CG12660-PA, partial (15%) 32 0.41
TC232910 similar to UP|Q6I8N0 (Q6I8N0) Pol polypeptide, partial ... 32 0.41
TC206179 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 31 0.53
TC221310 similar to UP|Q7XI13 (Q7XI13) Glycine-rich RNA-binding ... 30 1.2
TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 30 1.5
TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 30 1.5
TC235102 homologue to UP|Q9LFD4 (Q9LFD4) Protein kinase-like pro... 30 1.5
AI941072 similar to PIR|A23497|FWS glycinin chain A1aBx precurso... 30 1.5
>TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequence, partial
(22%)
Length = 742
Score = 52.4 bits (124), Expect = 2e-07
Identities = 29/93 (31%), Positives = 42/93 (44%), Gaps = 27/93 (29%)
Frame = +2
Query: 185 GMNRTGAGGPMRK---FGHFANKCSV---------TGWRCFKCNREGHLAVNCKTK---- 228
G+ G GG + FGH A C+ +G CF+C GHLA +C +
Sbjct: 200 GIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHLARDCGMEGGRF 379
Query: 229 -----------ESLCFNCNQPGHFSQDCMALRG 250
+S CFNC +PGHF+++C+ G
Sbjct: 380 GGGGGSGGGGGKSTCFNCGKPGHFARECVEASG 478
Score = 43.1 bits (100), Expect = 1e-04
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Frame = +2
Query: 198 FGHFANKC------------SVTGWRCFKCNREGHLAVNCKTKESL---------CFNCN 236
FGH A C G CF+C GH+A +C T + CF C
Sbjct: 152 FGHLARDCVRGGGGSVGIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCG 331
Query: 237 QPGHFSQDCMALRGESSGNVGKG 259
+ GH ++DC G G G G
Sbjct: 332 EVGHLARDCGMEGGRFGGGGGSG 400
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Frame = +2
Query: 198 FGHFANKCSVTGWRCFKCNREGHLAVNCKTKESL----------CFNCNQPGHFSQDCMA 247
FG A + G C++C GHLA +C + CFNC GH ++DC+
Sbjct: 2 FGFGARRNGGGGAACYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVR 181
Query: 248 LRGESSGNVGKG 259
G S G G G
Sbjct: 182 GGGGSVGIGGGG 217
>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
Length = 1138
Score = 52.4 bits (124), Expect = 2e-07
Identities = 24/63 (38%), Positives = 34/63 (53%)
Frame = +2
Query: 183 QRGMNRTGAGGPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFS 242
+RG +R ++ GH+A +C C C GH+A C TK SLC+NC +PGH +
Sbjct: 317 RRGFSRDNLCKNCKRPGHYARECPNVAI-CHNCGLPGHIASECTTK-SLCWNCKEPGHMA 490
Query: 243 QDC 245
C
Sbjct: 491 SSC 499
Score = 44.7 bits (104), Expect = 5e-05
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +2
Query: 197 KFGHFANKCSVTGWR------CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
K GH A +CS C C ++GH+A C T E C NC + GH ++DC
Sbjct: 530 KAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC-TNEKACNNCRKTGHLARDC 691
Score = 35.8 bits (81), Expect = 0.022
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 25/76 (32%)
Frame = +2
Query: 196 RKFGHFANKCSVTGWRCFKCNREGHLAVNCKT-------------------------KES 230
RK GH A C C CN GH+A C ++
Sbjct: 662 RKTGHLARDCP-NDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGGGGGYRDV 838
Query: 231 LCFNCNQPGHFSQDCM 246
+C NC Q GH S+DCM
Sbjct: 839 VCRNCQQLGHMSRDCM 886
Score = 34.3 bits (77), Expect = 0.063
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 187 NRTGAGGPMRKFGHFANKCSVTGWR---CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQ 243
+R+G GG G A G+R C C + GH++ +C +C NC GH +
Sbjct: 770 DRSGGGGG----GGGARGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAY 937
Query: 244 DC 245
+C
Sbjct: 938 EC 943
>TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (42%)
Length = 655
Score = 44.7 bits (104), Expect = 5e-05
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 197 KFGHFANKCSVTGWR------CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
K GH A +CS C C ++GH+A C T E C NC + GH ++DC
Sbjct: 15 KAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC-TNEKACNNCRKTGHLARDC 176
Score = 37.0 bits (84), Expect = 0.010
Identities = 23/73 (31%), Positives = 28/73 (37%), Gaps = 22/73 (30%)
Frame = +3
Query: 196 RKFGHFANKCSVTGWRCFKCNREGHLAVNCKT----------------------KESLCF 233
RK GH A C C CN GH+A C ++ +C
Sbjct: 147 RKTGHLARDCP-NDPICNLCNVSGHVARQCPKANVLGDXXGGGGGARGGGGGGYRDVVCR 323
Query: 234 NCNQPGHFSQDCM 246
NC Q GH S+DCM
Sbjct: 324 NCQQLGHMSRDCM 362
Score = 33.5 bits (75), Expect = 0.11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 212 CFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDC 245
C C + GH++ +C +C NC GH + +C
Sbjct: 318 CRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYEC 419
>TC233976
Length = 763
Score = 42.0 bits (97), Expect = 3e-04
Identities = 23/58 (39%), Positives = 26/58 (44%)
Frame = +1
Query: 194 PMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFSQDCMALRGE 251
P + G A T RC KC R GH A C +E CFN GH S +C R E
Sbjct: 217 PAGRGGSGAPAIVTTPLRCRKCGRLGHNAHECTYREVTCFNYQGKGHLSTNCPHPRKE 390
>TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (69%)
Length = 1623
Score = 41.6 bits (96), Expect = 4e-04
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 211 RCFKCNREGHLAVNCKTKE--SLCFNCNQPGHFSQDCMALRGESSGNVGKGKQLAPEERI 268
RCF C +GH A +CK + + C+ C + GH ++C + S G+ +P
Sbjct: 311 RCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSTRRGRSYSRSPVRSH 490
Query: 269 HAKEGKS 275
+ G+S
Sbjct: 491 SPRRGRS 511
>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
partial (45%)
Length = 995
Score = 41.2 bits (95), Expect = 5e-04
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Frame = +2
Query: 184 RGMNRTGAG-GPMRKFGHFANKCSVTGWRCFKCNREGHLAVNCKTKESL----------- 231
RG R G G G R FG G C+ C R GHLA +C +
Sbjct: 353 RGGGRYGGGEGRGRGFGRRGG-----GPECYNCGRIGHLARDCYHGQGGGGGDDGRNRRR 517
Query: 232 ---------CFNCNQPGHFSQDCMALRGESSGNVGKGKQ 261
CFNC + GHF+++C NVGKG +
Sbjct: 518 GGGGGGGGGCFNCGEEGHFAREC--------PNVGKGNE 610
>TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K24M7, partial (36%)
Length = 1224
Score = 39.3 bits (90), Expect = 0.002
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 13/63 (20%)
Frame = +1
Query: 196 RKFGHFANKCS--VTGWR----CFKCNREGHLAVNCK-------TKESLCFNCNQPGHFS 242
R+ GH A C + G + C+ C GH C TK + CF CNQ GH S
Sbjct: 358 RRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHPLQEGGTKFAECFVCNQRGHLS 537
Query: 243 QDC 245
++C
Sbjct: 538 KNC 546
Score = 35.0 bits (79), Expect = 0.037
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +1
Query: 212 CFKCNREGHLAVNC------KTKESLCFNCNQPGHFSQDCM 246
C +C R GH A NC C+NC + GH C+
Sbjct: 346 CLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCL 468
Score = 30.0 bits (66), Expect = 1.2
Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 5/42 (11%)
Frame = +1
Query: 209 GWRCFKCNREGHLAVNCK-----TKESLCFNCNQPGHFSQDC 245
G CF C H+A C K +C C + GH +++C
Sbjct: 262 GESCFICKAMDHIAKLCPEKAEWEKNKICLRCRRRGHRAKNC 387
>TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
(AT4g38680/F20M13_240), partial (42%)
Length = 891
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Frame = +3
Query: 209 GWRCFKCNREGHLAVNCKTKES-------------LCFNCNQPGHFSQDC 245
G C+KC GH+A +C C+NC + GHF++DC
Sbjct: 222 GGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGSCYNCGESGHFARDC 371
>TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like protein, partial
(62%)
Length = 1131
Score = 38.5 bits (88), Expect = 0.003
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Frame = +1
Query: 211 RCFKCNREGHLAVNCKTKE--SLCFNCNQPGHFSQDC 245
RCF C +GH A +CK + + C+ C + GH ++C
Sbjct: 361 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNC 471
Score = 35.4 bits (80), Expect = 0.028
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 199 GHFANKCSVTGWR--CFKCNREGHLAVNCK 226
GH+A C W+ C++C GH+ NCK
Sbjct: 385 GHWARDCKAGDWKNKCYRCGERGHIEKNCK 474
Score = 28.1 bits (61), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +1
Query: 232 CFNCNQPGHFSQDCMA 247
CFNC GH+++DC A
Sbjct: 364 CFNCGIDGHWARDCKA 411
>TC227589
Length = 547
Score = 37.7 bits (86), Expect = 0.006
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 21/66 (31%)
Frame = +2
Query: 212 CFKCNREGHLAVNCK---------------------TKESLCFNCNQPGHFSQDCMALRG 250
CF C +GH AVNC TK CF C + GH ++DC+
Sbjct: 47 CFNCGEDGHAAVNCSAAKRKKPCYVCGGLGHNARQCTKAQDCFICKKGGHRAKDCLEKHT 226
Query: 251 ESSGNV 256
S +V
Sbjct: 227 SRSKSV 244
Score = 35.0 bits (79), Expect = 0.037
Identities = 14/43 (32%), Positives = 20/43 (45%), Gaps = 9/43 (20%)
Frame = +2
Query: 212 CFKCNREGHLAVNCK---------TKESLCFNCNQPGHFSQDC 245
C+KC + GH + C S C C + GHF+Q+C
Sbjct: 404 CYKCGQLGHTGLACSKLPDEITSAATPSSCCKCGEAGHFAQEC 532
Score = 30.4 bits (67), Expect = 0.91
Identities = 15/45 (33%), Positives = 19/45 (41%), Gaps = 4/45 (8%)
Frame = +2
Query: 211 RCFKCNREGHLAV----NCKTKESLCFNCNQPGHFSQDCMALRGE 251
+C+ C R GHL + E C+ C Q GH C L E
Sbjct: 329 QCYVCKRVGHLCCVNTDDATPGEISCYKCGQLGHTGLACSKLPDE 463
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 14/59 (23%)
Frame = +2
Query: 196 RKFGHFANKC-------SVTGWRCFKCNREGHLAVNCKT-------KESLCFNCNQPGH 240
+K GH A C S + C KC GH +C+ KE C+ C + GH
Sbjct: 182 KKGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGH 358
>TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L16.11 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(10%)
Length = 1300
Score = 37.7 bits (86), Expect = 0.006
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 2/36 (5%)
Frame = +1
Query: 212 CFKCNREGHLAVNCKT--KESLCFNCNQPGHFSQDC 245
CF C EGH AVNC ++ C+ C GH ++ C
Sbjct: 61 CFNCGEEGHAAVNCSAVKRKKPCYVCGCLGHNARQC 168
Score = 36.6 bits (83), Expect = 0.013
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Frame = +1
Query: 212 CFKCNREGHLAVNCK---------TKESLCFNCNQPGHFSQDC 245
C+KC + GH + C S CF C + GHF+++C
Sbjct: 418 CYKCGQLGHTGLACSRLRDEITSGATPSSCFKCGEEGHFAREC 546
Score = 32.7 bits (73), Expect = 0.18
Identities = 16/45 (35%), Positives = 20/45 (43%), Gaps = 4/45 (8%)
Frame = +1
Query: 211 RCFKCNREGHLAV----NCKTKESLCFNCNQPGHFSQDCMALRGE 251
+C+ C R GHL + E C+ C Q GH C LR E
Sbjct: 343 QCYVCKRLGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDE 477
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 14/59 (23%)
Frame = +1
Query: 196 RKFGHFANKC-------SVTGWRCFKCNREGHLAVNCKT-------KESLCFNCNQPGH 240
+K GH A C S + C KC GH +C+ KE C+ C + GH
Sbjct: 196 KKGGHRAKDCPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKRLGH 372
>TC232026
Length = 689
Score = 33.9 bits (76), Expect = 0.082
Identities = 13/27 (48%), Positives = 20/27 (73%), Gaps = 1/27 (3%)
Frame = +2
Query: 200 HFANK-CSVTGWRCFKCNREGHLAVNC 225
H++ K CS++ + C+KC R GHLA +C
Sbjct: 11 HWSKKTCSLSTYECWKCQRPGHLAEDC 91
Score = 31.6 bits (70), Expect = 0.41
Identities = 10/28 (35%), Positives = 15/28 (52%)
Frame = +2
Query: 225 CKTKESLCFNCNQPGHFSQDCMALRGES 252
C C+ C +PGH ++DCM G +
Sbjct: 29 CSLSTYECWKCQRPGHLAEDCMVTDGSN 112
>TC224993 homologue to UP|Q9W3A9 (Q9W3A9) CG12660-PA, partial (15%)
Length = 526
Score = 31.6 bits (70), Expect = 0.41
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 227 TKESLCFNCNQPGHFSQDCM 246
T+ CFNC +PGH + DC+
Sbjct: 76 TRGGACFNCGKPGHRASDCI 135
Score = 29.3 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 209 GWRCFKCNREGHLAVNCKTKESLCFNCNQPGHFS 242
G CF C + GH A +C T++ + F GHFS
Sbjct: 82 GGACFNCGKPGHRASDCITQKRVFF*F---GHFS 174
>TC232910 similar to UP|Q6I8N0 (Q6I8N0) Pol polypeptide, partial (3%)
Length = 690
Score = 31.6 bits (70), Expect = 0.41
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 227 TKESLCFNCNQPGHFSQDCMALRGES 252
TK+ C C +PGH +DC +G++
Sbjct: 18 TKKLSCSKCGKPGHLKRDCRVFKGKN 95
>TC206179 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (16%)
Length = 407
Score = 31.2 bits (69), Expect = 0.53
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 215 CNREGHLAVNCKTKESLCFNCNQPGHFSQD 244
C R GH A C ++C NC PGH + +
Sbjct: 321 CKRPGHYARECPNV-AICHNCGLPGHIASE 407
>TC221310 similar to UP|Q7XI13 (Q7XI13) Glycine-rich RNA-binding
protein-like, partial (12%)
Length = 549
Score = 30.0 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 232 CFNCNQPGHFSQDCMALRGESSGNVG 257
CF C +PGH+++DC L G G G
Sbjct: 4 CFKCGRPGHWARDC-PLAGGGRGRGG 78
>TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (89%)
Length = 936
Score = 29.6 bits (65), Expect = 1.5
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = +2
Query: 232 CFNCNQPGHFSQDCMALRGES 252
C+ C +PGHF+++C +RG S
Sbjct: 338 CYECGEPGHFAREC-RMRGGS 397
>TC226201 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (72%)
Length = 820
Score = 29.6 bits (65), Expect = 1.5
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = +1
Query: 232 CFNCNQPGHFSQDCMALRGES 252
C+ C +PGHF+++C +RG S
Sbjct: 247 CYECGEPGHFAREC-RMRGGS 306
>TC235102 homologue to UP|Q9LFD4 (Q9LFD4) Protein kinase-like protein,
partial (13%)
Length = 420
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 24/51 (46%)
Frame = +3
Query: 162 NRMAEATREHHQRLMATAMYQQRGMNRTGAGGPMRKFGHFANKCSVTGWRC 212
NR E EH QR M + +QRG+ R+ G A+ C V G +C
Sbjct: 3 NRRQEEEEEHPQRRMNGQLRKQRGICRSFQGSSCSA----ASPCDVVGRQC 143
>AI941072 similar to PIR|A23497|FWS glycinin chain A1aBx precursor - soybean,
partial (31%)
Length = 487
Score = 29.6 bits (65), Expect = 1.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = -1
Query: 116 VKIDCLQSDFRSNCLR-------YYSIGLSGLSSATVWLVLIGRSMGYRMVDLNRMAEAT 168
V DC+ +F+ + ++S+ LS L+S T WLVLI S ++ L++M
Sbjct: 316 VHADCMFQEFQGEATQCTASFVVFFSLMLSFLASITSWLVLI--SYRLLLLVLSKMGSPR 143
Query: 169 REHHQRLMATAMYQQRGMNRT 189
L A + G NR+
Sbjct: 142 HMVELVLPAVGVNNSTGSNRS 80
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,022,724
Number of Sequences: 63676
Number of extensions: 206919
Number of successful extensions: 1438
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of query: 275
length of database: 12,639,632
effective HSP length: 96
effective length of query: 179
effective length of database: 6,526,736
effective search space: 1168285744
effective search space used: 1168285744
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0103.5