BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.4
(378 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214589 weakly similar to UP|K502_ACTCH (P43394) Fruit protein ... 38 0.007
CA799247 33 0.16
BG238408 33 0.16
TC212768 33 0.16
BI974214 similar to GP|8453100|gb|A short-root protein {Arabidop... 33 0.21
BI973184 similar to GP|6739518|gb|A eukaryotic initiation factor... 33 0.28
TC205906 weakly similar to UP|Q6K6F2 (Q6K6F2) Hydroxyproline-ric... 33 0.28
TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%) 32 0.36
BG405164 32 0.47
TC214477 weakly similar to UP|K502_ACTCH (P43394) Fruit protein ... 32 0.62
AI736730 similar to GP|20805202|dbj OJ1294_F06.10 {Oryza sativa ... 31 0.80
TC210508 31 0.80
CD403906 31 0.80
TC215964 similar to GB|AAM15519.1|20198312|U78721 Expressed prot... 31 0.80
TC228724 similar to UP|Q9FML2 (Q9FML2) Histone deacetylase, part... 31 0.80
TC227016 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.... 31 1.0
BM886461 31 1.0
AW734846 31 1.0
TC228693 similar to UP|Q8S9A6 (Q8S9A6) Glucosyltransferase-3, pa... 31 1.0
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 30 1.4
>TC214589 weakly similar to UP|K502_ACTCH (P43394) Fruit protein PKIWI502,
partial (49%)
Length = 1254
Score = 38.1 bits (87), Expect = 0.007
Identities = 26/95 (27%), Positives = 41/95 (42%), Gaps = 1/95 (1%)
Frame = +3
Query: 227 PPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRP-HPALASPSLASSTL 285
PP+ H + G P++ S P + S +P+T + PRP H ++ S AS T
Sbjct: 156 PPLPPHYARTPPSGPRPLSPRSSTPPSPSSTSPSTSPTRPITPRPTHSPGSTSSSASPTR 335
Query: 286 ADPRSGPSVTQSILPTVPAMENCKIAMHRNPPKSQ 320
+ PR PS + P + R PP+ +
Sbjct: 336 SSPRFWPSRRRRSSPRRVECSSFW*RAWRGPPRKR 440
>CA799247
Length = 435
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +3
Query: 251 PKTDSIITP----NTRLKIHVPPRPHPAL--ASPSLASSTLADPRS 290
P S +TP NT L +H+ P P+P+L ASPS+ S L P S
Sbjct: 138 PPLSSPLTPCFQLNTTLSLHLQPFPNPSLASASPSIQGSPLPSPPS 275
>BG238408
Length = 475
Score = 33.5 bits (75), Expect = 0.16
Identities = 26/91 (28%), Positives = 33/91 (35%)
Frame = +1
Query: 228 PISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLAD 287
P H + SR GS P ++ PP P RP P SPS +S A
Sbjct: 175 PPEPHRRNNSRRGSRPSSRASPPPMWPR------------PSRPSPTQTSPSTSS---AG 309
Query: 288 PRSGPSVTQSILPTVPAMENCKIAMHRNPPK 318
PRS + + PT + A PK
Sbjct: 310 PRSSGTTSTPTTPTS*SSNTSSPAAATTTPK 402
>TC212768
Length = 465
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/52 (34%), Positives = 25/52 (47%)
Frame = +2
Query: 227 PPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASP 278
PP+S H ++ S S P N+ +PP T S +T P P P+L P
Sbjct: 80 PPLSHHTRRPSPTSSAPPNRRCTPPPTPSTLT--------CDPTPAPSLNPP 211
>BI974214 similar to GP|8453100|gb|A short-root protein {Arabidopsis
thaliana}, partial (13%)
Length = 422
Score = 33.1 bits (74), Expect = 0.21
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Frame = +2
Query: 252 KTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADPRSGPSV----TQSILPTVP 303
KT + P+T + I+ P P + SP L +STL+ P S P T S P VP
Sbjct: 140 KTYPRLLPSTTIPINPTLPPLPTIPSPPLPASTLSSPSSSPPESGPRTSSSKPHVP 307
>BI973184 similar to GP|6739518|gb|A eukaryotic initiation factor 4B
{Arabidopsis thaliana}, partial (29%)
Length = 426
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/47 (46%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Frame = -2
Query: 249 SPPKTDSIITPNTRLKIHVPPR-----PHPALASPSLASSTLADPRS 290
SPP+TDS P+ + H P P PALASPS A ADP S
Sbjct: 266 SPPQTDSPY-PSPSPETHSPNHRLEADPTPALASPSAAQPHAADPLS 129
>TC205906 weakly similar to UP|Q6K6F2 (Q6K6F2) Hydroxyproline-rich
glycoprotein-like, partial (27%)
Length = 787
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 238 RLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADPRSGP 292
RL NP SPP+ S + K +PP P P PS ASS + PRS P
Sbjct: 99 RLHPNPPTTTPSPPR--SHLRRLRFPKPFLPPNPSPTPTIPSSASSEMPLPRSKP 257
>TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%)
Length = 537
Score = 32.3 bits (72), Expect = 0.36
Identities = 24/65 (36%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Frame = +1
Query: 241 SNPMNKLD--SPPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADPRSGPS-VTQS 297
+ P N L S P S I P+T L PP P P+ ++P+ S LA S PS T +
Sbjct: 256 ATPPNTLSPTSQPPYPSTIPPSTSLSPSYPPSPSPS-SAPTYPPSYLAPATSPPSPSTSA 432
Query: 298 ILPTV 302
PT+
Sbjct: 433 TTPTI 447
>BG405164
Length = 419
Score = 32.0 bits (71), Expect = 0.47
Identities = 18/65 (27%), Positives = 34/65 (51%), Gaps = 1/65 (1%)
Frame = +2
Query: 56 VYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQYFYIPSGTVYTFGYSISIYL-RVQ 114
+Y F +S+ L + S ++Y+Y +G+N+ L + + + + F Y I IY+ +
Sbjct: 173 LYIFTLHLSLSLSLYLSLSLSIYIYIYGFNLLLSLSFHFF--SVLV*FNYVIKIYIYGFE 346
Query: 115 YIPSG 119
YI G
Sbjct: 347 YIVRG 361
>TC214477 weakly similar to UP|K502_ACTCH (P43394) Fruit protein PKIWI502,
partial (40%)
Length = 716
Score = 31.6 bits (70), Expect = 0.62
Identities = 25/95 (26%), Positives = 38/95 (39%), Gaps = 1/95 (1%)
Frame = +2
Query: 227 PPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPR-PHPALASPSLASSTL 285
PP + G P++ S P + S +P+T PR H ++ S S T
Sbjct: 185 PPFRPPYARTPPSGPRPLSPRSSTPPSRSFTSPSTSPTPPTLPRHTHSPGSTSSSGSPTR 364
Query: 286 ADPRSGPSVTQSILPTVPAMENCKIAMHRNPPKSQ 320
PRS PS + P A + R+PP+ +
Sbjct: 365 RSPRSWPSRRRRSSPRPVACSSFW*RAWRDPPRKR 469
>AI736730 similar to GP|20805202|dbj OJ1294_F06.10 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 373
Score = 31.2 bits (69), Expect = 0.80
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Frame = +2
Query: 225 VRPPISQHNKKVSRLGSNPMNKLDS--PPKTDSIITPNTRLKIHVPPRPHPALASPSLAS 282
+R P H+ + L P+ +L PP+T P + ++H PRPHP L S
Sbjct: 83 LRLPNPPHHSNIPLL---PLLQLPQNYPPQTQ---LPPLQRRLH--PRPHPHHHQKPLKS 238
Query: 283 STLADPRSGPSVT----QSILPTVPAMENCKIA 311
S A P VT S PT+P K A
Sbjct: 239 SA*ASTTPSPHVTIS*KDSCFPTIPLSAPSKFA 337
>TC210508
Length = 413
Score = 31.2 bits (69), Expect = 0.80
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 230 SQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADPR 289
SQ +K+ +RL + + S P T S ++ T ++ PP P P AS + S + PR
Sbjct: 138 SQRSKRCARLTT----RTSSSPSTTSDLSSPTSIRSS-PPSPTPTRASST--SRARSSPR 296
Query: 290 SGPSVTQSILP 300
S PS ++ P
Sbjct: 297 STPSARRATSP 329
>CD403906
Length = 557
Score = 31.2 bits (69), Expect = 0.80
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = +3
Query: 86 IYLRVQYFYIPSGTVYTFGYSISIYLRVQYIPSGTVY------LYTFGYSISIYLRVQYI 139
+Y+ V Y+ +G+++ F Y PS T Y Y F I YL + I
Sbjct: 54 VYMWVYITYVNAGSIHKF-----------YQPSTTFYHSLTAGTYIFSLKIGSYLVRRLI 200
Query: 140 PSGTVY 145
P GT+Y
Sbjct: 201 PQGTIY 218
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 11/58 (18%)
Frame = +3
Query: 76 TVYLYTFGYNIYLR---VQYFYIPSGT--------VYTFGYSISIYLRVQYIPSGTVY 122
++Y+Y + Y Y+ + FY PS T Y F I YL + IP GT+Y
Sbjct: 45 SLYVYMWVYITYVNAGSIHKFYQPSTTFYHSLTAGTYIFSLKIGSYLVRRLIPQGTIY 218
Score = 28.5 bits (62), Expect = 5.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Frame = +3
Query: 32 TVYLYTFGYSIYLR---VQYIYIPSGT--------VYTFGYSISIYLRVQYIPSGTVY 78
++Y+Y + Y Y+ + Y PS T Y F I YL + IP GT+Y
Sbjct: 45 SLYVYMWVYITYVNAGSIHKFYQPSTTFYHSLTAGTYIFSLKIGSYLVRRLIPQGTIY 218
>TC215964 similar to GB|AAM15519.1|20198312|U78721 Expressed protein
{Arabidopsis thaliana;} , partial (63%)
Length = 889
Score = 31.2 bits (69), Expect = 0.80
Identities = 23/83 (27%), Positives = 37/83 (43%), Gaps = 15/83 (18%)
Frame = +1
Query: 232 HNKKVSRLGSNPMNKLDSPPK-----TDSIIT-------PNTRLKIHVPPRPHPA---LA 276
H ++S+ G+NP + PK + +T P T + P PH L+
Sbjct: 178 HPIRLSKKGTNPQRENPCSPKWISSNLEPTVTRWWLRSCPPTPSYTNRDPLPHTTSNPLS 357
Query: 277 SPSLASSTLADPRSGPSVTQSIL 299
SPS +S+T +P S P T ++
Sbjct: 358 SPSASSATTPEPSSSPLATNKLI 426
>TC228724 similar to UP|Q9FML2 (Q9FML2) Histone deacetylase, partial (82%)
Length = 1677
Score = 31.2 bits (69), Expect = 0.80
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 250 PPKTDSIITPNTRLKIHVPPRPHPALASPSL-ASSTLADPRSGPSVTQS 297
PP T + TP T P P P+ PSL SS R+ PS T S
Sbjct: 275 PPPTSAASTPTTTSTSSPPSPPRPSPIPPSLVTSSASTSARTAPSSTAS 421
>TC227016 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
{Arabidopsis thaliana;} , partial (25%)
Length = 1286
Score = 30.8 bits (68), Expect = 1.0
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Frame = +1
Query: 268 PPRPH-PALASPSLASSTLADPR---SGPSVTQSILPTVPAMENCKIAMHRN----PPKS 319
PP P P ASPS S+T PR S PS+ PT + N + N PP
Sbjct: 307 PPNPSSPPSASPSKTSTTSTTPRASASSPSLAPLAAPTARSTSNSASSAAPNSITPPPTL 486
Query: 320 QVNYTTILQGNLLVNQSNHL-LPATNNYSQHYLLKP 354
+ T +L + + L +P H LL P
Sbjct: 487 TLTLTLVLISSATEDTPLPLPIPILTPLLHHLLLTP 594
>BM886461
Length = 422
Score = 30.8 bits (68), Expect = 1.0
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Frame = +3
Query: 253 TDSIITPNTRLK-IHVPPRPHP----------ALASPSLASSTLADPRSGP-SVTQSILP 300
T S TP T I PP P P +L SP ASS+ + PR GP S +QS P
Sbjct: 3 TSSSPTPQTTSSSISSPPSPSPPRSCSLSTSPSLESPPSASSSTSSPRPGPASNSQSSGP 182
Query: 301 TVPA 304
PA
Sbjct: 183 WEPA 194
>AW734846
Length = 448
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +2
Query: 229 ISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADP 288
+S H+ +S S SPP S+ P+ L PP P +S +LAS+
Sbjct: 5 LSLHHHPLSLSTSRAAPSSSSPPPPPSLSHPHLHLLPFPPPPQSPTASSWTLASAPTTSS 184
Query: 289 RSGPSVTQSILPT 301
+ P+ + PT
Sbjct: 185 PTAPTPSPLSAPT 223
>TC228693 similar to UP|Q8S9A6 (Q8S9A6) Glucosyltransferase-3, partial (59%)
Length = 907
Score = 30.8 bits (68), Expect = 1.0
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Frame = +1
Query: 242 NPMNKLDSPPKTDSIITP--NTRLKIHVPPRPHPALASPSLASSTLADPRSGPS------ 293
+P K PP S TP NT PP P P+ ASP S + P PS
Sbjct: 193 HPPTKTPPPPPPPSPATPPPNTSPPSPPPPPPSPSTASPRSPSPPFSLPWPSPSSSAAPP 372
Query: 294 VTQSILPTVPA 304
T S+ + P+
Sbjct: 373 ATTSVASSTPS 405
>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1270
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 241 SNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHP---ALASPSLASSTLADP-RSGPSVTQ 296
S P + + SP + S P + PP P A SPS A+S+ + P S PS
Sbjct: 677 SPPPSPMHSPSSSPSPSAPTSPAATSTPPSPSAPSSAATSPSSAASSTSSPSSSAPSSPP 856
Query: 297 SILPTVP 303
S P+ P
Sbjct: 857 SSWPSSP 877
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,657,466
Number of Sequences: 63676
Number of extensions: 304859
Number of successful extensions: 2462
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of query: 378
length of database: 12,639,632
effective HSP length: 99
effective length of query: 279
effective length of database: 6,335,708
effective search space: 1767662532
effective search space used: 1767662532
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0103.4