TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0103.3
         (186 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208948 similar to UP|Q93ZL4 (Q93ZL4) At3g07700/F17A17.4, parti...    28  2.5
CO983879                                                               28  3.2
AW099288                                                               27  4.2
TC231988 weakly similar to UP|Q7DLK2 (Q7DLK2) Chloroplast outer ...    27  4.2
TC220112 similar to UP|Q7XA06 (Q7XA06) Synaptotagmin C, partial ...    27  5.5
TC229892 UP|Q7PHQ1 (Q7PHQ1) ENSANGP00000024044 (Fragment), parti...    27  7.1
TC207190 similar to UP|Q93Y40 (Q93Y40) Oxysterol-binding protein...    26  9.3

>TC208948 similar to UP|Q93ZL4 (Q93ZL4) At3g07700/F17A17.4, partial (33%)
          Length = 846

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 100 FEKECLGNKILEKDMKCENALVSELKLEGKRAG 132
           F KE  G  +  +    ENAL++++K++GKR G
Sbjct: 272 FTKEKSGLSM*PRPSSVENALITKVKVDGKRNG 174


>CO983879 
          Length = 770

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 24/69 (34%), Positives = 32/69 (45%), Gaps = 14/69 (20%)
 Frame = -1

Query: 76  HFLNNKSDQ--------LNIGEWFLESWLVLDFEKECLGNKILE-----KDMKCENALV- 121
           HFL +++D         L IG   LE+WL+ +F K      IL+       MK E  LV 
Sbjct: 272 HFLRHENDHELLKYAIMLKIGGMQLENWLLNEFCKNSTAELILQGFRSWPSMKLEILLV* 93

Query: 122 SELKLEGKR 130
              +L GKR
Sbjct: 92  YTQRLRGKR 66


>AW099288 
          Length = 425

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 54  DPPCKCHGGIDSLVVPVNFSNSHFLNNKSDQLNIG 88
           +PP KC GG   L+  V  SN+H   + S   N G
Sbjct: 250 NPPSKCQGGPSVLLFTVIHSNTHHTKHISLNSN*G 354


>TC231988 weakly similar to UP|Q7DLK2 (Q7DLK2) Chloroplast outer envelope
           protein 86, partial (22%)
          Length = 950

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 14/37 (37%), Positives = 19/37 (50%)
 Frame = -1

Query: 76  HFLNNKSDQLNIGEWFLESWLVLDFEKECLGNKILEK 112
           H L+ +   LN G+W  E+W  L     CL N +L K
Sbjct: 530 HILSTQWMILNKGDWTHETWTQLT*ITYCLSN*LLNK 420


>TC220112 similar to UP|Q7XA06 (Q7XA06) Synaptotagmin C, partial (76%)
          Length = 1867

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -1

Query: 66  LVVPVNFSNSHFLNNKSDQLNIGEWFLES 94
           LV P+N  NS  +     + N+G+ FL+S
Sbjct: 325 LVQPINLKNSFIIRRLHPERNLGQKFLQS 239


>TC229892 UP|Q7PHQ1 (Q7PHQ1) ENSANGP00000024044 (Fragment), partial (8%)
          Length = 337

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 147 KEVAKWINMFYSFELCKCKNIVI 169
           KE+A+W   +++ E+ KCK+ V+
Sbjct: 89  KEIAEWYEGYFAREVPKCKSSVV 157


>TC207190 similar to UP|Q93Y40 (Q93Y40) Oxysterol-binding protein, partial
           (60%)
          Length = 1002

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 21/79 (26%), Positives = 36/79 (44%)
 Frame = -3

Query: 81  KSDQLNIGEWFLESWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRSEDVIG 140
           KS+ L +  W L S  +  F   CL +K+L      + +  S   L G+R    + + +G
Sbjct: 715 KSNHLGVNLWPLASRFL--FSVLCLSSKLLFS*PDVDRSPFSRAILSGRRRESDANNFLG 542

Query: 141 SETQLRKEVAKWINMFYSF 159
           + ++L    AK +    SF
Sbjct: 541 AVSKLLILCAKCVYWNLSF 485


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,969,055
Number of Sequences: 63676
Number of extensions: 147404
Number of successful extensions: 748
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of query: 186
length of database: 12,639,632
effective HSP length: 92
effective length of query: 94
effective length of database: 6,781,440
effective search space: 637455360
effective search space used: 637455360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)