BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.2
(681 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221918 weakly similar to UP|Q6H890 (Q6H890) BRAP2-like protein... 37 0.022
TC205954 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partia... 37 0.029
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%) 36 0.064
TC230883 UP|Q8LKR3 (Q8LKR3) Receptor-like kinase RHG4, complete 36 0.064
TC216574 similar to UP|RK4_SPIOL (O49937) 50S ribosomal protein ... 35 0.11
TC206811 weakly similar to PRF|1921322A.0|737061|1921322A polyse... 34 0.19
TC224759 similar to UP|Q9SPF3 (Q9SPF3) Ripening induced protein ... 34 0.24
BI700472 similar to GP|22497402|gb| transaldolase-like protein {... 34 0.24
TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, par... 33 0.32
TC203730 similar to UP|Q9S728 (Q9S728) En/Spm-like transposon pr... 33 0.32
TC215924 similar to GB|AAS68109.1|45592910|BT011785 At2g38360 {A... 33 0.32
TC203324 similar to UP|Q9S728 (Q9S728) En/Spm-like transposon pr... 33 0.32
CO981603 33 0.42
BI786759 33 0.42
TC220352 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%) 33 0.42
TC226339 homologue to UP|Q41123 (Q41123) PVPR3 protein, partial ... 33 0.54
AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidop... 33 0.54
TC219836 similar to GB|AAO64882.1|29029006|BT005947 At5g13560 {A... 33 0.54
TC226337 similar to UP|Q41123 (Q41123) PVPR3 protein, partial (93%) 33 0.54
TC223243 weakly similar to GB|AAT41833.1|48310526|BT014850 At3g4... 28 0.60
>TC221918 weakly similar to UP|Q6H890 (Q6H890) BRAP2-like protein, partial
(15%)
Length = 692
Score = 37.4 bits (85), Expect = 0.022
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +3
Query: 444 CSRVIGDKASLLKIQASGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVI 503
CS K + L I P +P P+P LNS+ L PI
Sbjct: 63 CSESTRWKRTTLWIPKPSSNPNPNPNPNPNPTTLNSANAEAHSTCSEPL-------PIPR 221
Query: 504 SSPRGPNLTSSANAPPP---PAHTSTPSVGRISQLEKTLA 540
S PR L SS+++P P P+ TS PSV S + T +
Sbjct: 222 SQPRPLFLLSSSSSPSPTTSPSTTSFPSVDPTSTVSTTFS 341
>TC205954 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial (89%)
Length = 958
Score = 37.0 bits (84), Expect = 0.029
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -1
Query: 458 QASGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGL-VDGSLSRPIVISSPRGPNLTSSAN 516
+AS + L D P P + PS ++PAQ + SLS P SSP P S+
Sbjct: 739 RASPRDSLARSDSPPPPSYPRRTSPSQSVPAQRNSPLSASLSVPSPGSSPLPPPPPSTPR 560
Query: 517 APPPPAHTSTPSVGRI 532
P PA P++ +
Sbjct: 559 TPRTPASAPPPAMSSV 512
>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
Length = 1270
Score = 35.8 bits (81), Expect = 0.064
Identities = 26/87 (29%), Positives = 33/87 (37%)
Frame = +2
Query: 442 SDCSRVIGDKASLLKIQASGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPI 501
S CS + + PL P PSP SS PS + P + P
Sbjct: 596 SSCSPAQAPASPTTSSPTTALPPLPASSPPPSPMHSPSSSPSPSAP----------TSPA 745
Query: 502 VISSPRGPNLTSSANAPPPPAHTSTPS 528
S+P P+ SSA P A +ST S
Sbjct: 746 ATSTPPSPSAPSSAATSPSSAASSTSS 826
>TC230883 UP|Q8LKR3 (Q8LKR3) Receptor-like kinase RHG4, complete
Length = 3053
Score = 35.8 bits (81), Expect = 0.064
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 459 ASGKRPLGEEDPRPSPKRLNSS-EPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANA 517
AS + P E PR S LNS+ PS TIP+ LS + S P T+S
Sbjct: 116 ASLRSPSPEHSPRISIPSLNSALSPSRTIPSP---APSLLSPTFLSSKPSTSTATTSPPC 286
Query: 518 PPPPAHTSTPS 528
PPPP+ PS
Sbjct: 287 PPPPSPP*PPS 319
>TC216574 similar to UP|RK4_SPIOL (O49937) 50S ribosomal protein L4,
chloroplast precursor (R-protein L4), partial (74%)
Length = 1364
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/82 (32%), Positives = 38/82 (45%), Gaps = 9/82 (10%)
Frame = +1
Query: 468 EDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIV-------ISSPRGPNLTSSANAPPP 520
++P P P R PS T PA+ S S P + ++P P +SA APPP
Sbjct: 202 KNPSPFPARPPLLFPSSTSPARGSASPSSTSAPPLPTPPEPSSTAPSSPTSRTSAAAPPP 381
Query: 521 --PAHTSTPSVGRISQLEKTLA 540
PA S + G S+ +K +A
Sbjct: 382 PSPAERSEAADGSPSRRKKPVA 447
>TC206811 weakly similar to PRF|1921322A.0|737061|1921322A polyserin. {Homo
sapiens;} , partial (25%)
Length = 1086
Score = 34.3 bits (77), Expect = 0.19
Identities = 34/123 (27%), Positives = 48/123 (38%)
Frame = +1
Query: 441 VSDCSRVIGDKASLLKIQASGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRP 500
VSD V G S Q +PL + P N S T+PA LV S
Sbjct: 304 VSDSKVVFGFLFSPTLTQLQRLQPLKTNEQSDGPVVRNIS----TMPAPKKLVQPS---- 459
Query: 501 IVISSPRGPNLTSSANAPPPPAHTSTPSVGRISQLEKTLAELRQEAQLESSVKADQIAST 560
S+ P L + PPPP PS ++ KTL + + +A ++ VK +
Sbjct: 460 ---SNGMPPPLLRTMPPPPPPPKFCGPSEVKVQAKNKTLLKTKSDAVPDTLVKLMEYGEE 630
Query: 561 EAD 563
+ D
Sbjct: 631 DDD 639
>TC224759 similar to UP|Q9SPF3 (Q9SPF3) Ripening induced protein (Fragment),
partial (78%)
Length = 427
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/71 (33%), Positives = 32/71 (44%)
Frame = +2
Query: 464 PLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAH 523
P E+DP PSP R + +IP L+ L+ P+ +S P P S PP
Sbjct: 20 PFTEQDPPPSPSRFVPHQLFASIPTATSLL---LALPLPLSLPLRP--LSWTLCPPSARS 184
Query: 524 TSTPSVGRISQ 534
TPS IS+
Sbjct: 185 FPTPSFSMISK 217
>BI700472 similar to GP|22497402|gb| transaldolase-like protein {Arabidopsis
lyrata}, partial (26%)
Length = 422
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/71 (33%), Positives = 32/71 (44%)
Frame = +1
Query: 464 PLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAH 523
P E+DP PSP R + +IP L+ L+ P+ +S P P S PP
Sbjct: 13 PFTEQDPPPSPSRFVPHQLFASIPTAPSLL---LALPLPLSLPLRP--LSWTLCPPSARS 177
Query: 524 TSTPSVGRISQ 534
TPS IS+
Sbjct: 178 FPTPSFSMISK 210
>TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, partial (84%)
Length = 950
Score = 33.5 bits (75), Expect = 0.32
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +2
Query: 470 PRPSPKRLNSSEP-SGTIPAQHGL----VDGSLSRPIVISSPRGPNLTSSANAPPPPAHT 524
P PSP S+ P + T+P G +LS + S+P T++ APPPP +
Sbjct: 437 PSPSPPMALSAPPVARTVPPCSGT*TSPSTSTLSPLVTRSTPSSSPPTATGXAPPPPLPS 616
Query: 525 STPSVGRISQLEKTLAELRQEAQLESSVKA 554
S+ ++ R ++L + + A+ +S A
Sbjct: 617 SSSTLRRRARLTSSSPSTSRSARRPASPSA 706
>TC203730 similar to UP|Q9S728 (Q9S728) En/Spm-like transposon protein
(Protodermal factor 1), partial (47%)
Length = 1088
Score = 33.5 bits (75), Expect = 0.32
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +1
Query: 461 GKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPP 520
G P DP PS S+ PSG G GS P+ +S P P + + P P
Sbjct: 301 GSSPPQHHDPTPSTPSTPSNPPSG------GYYGGSPPTPVTVSPPSTPVDPGTPSIPSP 462
Query: 521 P 521
P
Sbjct: 463 P 465
>TC215924 similar to GB|AAS68109.1|45592910|BT011785 At2g38360 {Arabidopsis
thaliana;} , partial (68%)
Length = 947
Score = 33.5 bits (75), Expect = 0.32
Identities = 35/93 (37%), Positives = 47/93 (49%), Gaps = 6/93 (6%)
Frame = +3
Query: 458 QASGKRPLGEEDPRPSPK------RLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNL 511
++SG P P PSPK R + + S T P+ H SLS PI+ S
Sbjct: 216 RSSGTAPRSRS-PSPSPKPPSASARTSPTSASTTTPSFHSFSQ-SLSSPILSLSS----- 374
Query: 512 TSSANAPPPPAHTSTPSVGRISQLEKTLAELRQ 544
+SSA++PP P +ST SV +I+ LAEL Q
Sbjct: 375 SSSASSPPGP--SSTSSVRQINH-SLFLAELFQ 464
>TC203324 similar to UP|Q9S728 (Q9S728) En/Spm-like transposon protein
(Protodermal factor 1), partial (28%)
Length = 728
Score = 33.5 bits (75), Expect = 0.32
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +2
Query: 461 GKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPP 520
G P DP PS S+ PSG G GS P+ +S P P + + P P
Sbjct: 314 GSSPPQHHDPTPSTPSTPSNPPSG------GYYGGSPPTPVTVSPPSTPVDPGTPSIPSP 475
Query: 521 P 521
P
Sbjct: 476 P 478
>CO981603
Length = 723
Score = 33.1 bits (74), Expect = 0.42
Identities = 19/53 (35%), Positives = 25/53 (46%)
Frame = +1
Query: 476 RLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHTSTPS 528
RL S PS ++P H V S +P + P P S PPPP + +PS
Sbjct: 238 RLGESPPSDSVPPSHPRVGASRPKP*RRAPPSSP----SVPLPPPPPCSPSPS 384
>BI786759
Length = 422
Score = 33.1 bits (74), Expect = 0.42
Identities = 23/72 (31%), Positives = 28/72 (37%)
Frame = +1
Query: 460 SGKRPLGEEDPRPSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPP 519
S RP P P P P T P+ + LSRP + S PR P + PP
Sbjct: 208 SSSRPSPPSSPPPEPVPSPPISPPSTSPS---VAAAPLSRPRLPSLPRTPFTAPRSRPPP 378
Query: 520 PPAHTSTPSVGR 531
STP + R
Sbjct: 379 LRGSLSTPRLTR 414
>TC220352 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%)
Length = 522
Score = 33.1 bits (74), Expect = 0.42
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -1
Query: 11 KRNVVAATPLRCVPPVRPPPPGGVPLEEKDVIAFRTRTWKSLSAPAARDLPAGT 64
+R ++TP R PP RPPPP +D A S + P A +L T
Sbjct: 414 RRRGSSSTPPRTPPPCRPPPPPRASPSSRDAAAAAAAAAGSSTHPPAGELSCST 253
>TC226339 homologue to UP|Q41123 (Q41123) PVPR3 protein, partial (82%)
Length = 750
Score = 32.7 bits (73), Expect = 0.54
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +1
Query: 506 PRGPNLTSSANAPPPPAHTSTPS 528
PR PNL S+ PPPP H + PS
Sbjct: 193 PRLPNLLDSSTQPPPPRHRAPPS 261
>AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidopsis
thaliana}, partial (19%)
Length = 342
Score = 32.7 bits (73), Expect = 0.54
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 472 PSPKRLNSSEPSGTIPAQHGLVDGSLSRPIVISS-PRGPNLTSSANAPPPPAHTSTPS 528
P P + + PSGT A + S+P V SS P P S PPPP +PS
Sbjct: 128 PPPPPTSPAAPSGTSSASSSAES*NPSKPSVSSSAPNAPPPPPSRPLPPPPPPPPSPS 301
>TC219836 similar to GB|AAO64882.1|29029006|BT005947 At5g13560 {Arabidopsis
thaliana;} , partial (10%)
Length = 766
Score = 32.7 bits (73), Expect = 0.54
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 496 SLSRPIVISSPRGPNLTSSANAPPPP---AHTSTPSVGRISQLEKTLAELRQEAQLESSV 552
S+ RPI+ + + A A PP +TPSV +Q + E SV
Sbjct: 309 SIERPIL-------EIETPAKAETPPFDKKSDATPSVSAPTQGAELSKPETDELPKSPSV 467
Query: 553 KADQIASTEADLENLRSDLAK 573
K DQI EA+L L S+ K
Sbjct: 468 KTDQILDHEAELAKLESEFGK 530
>TC226337 similar to UP|Q41123 (Q41123) PVPR3 protein, partial (93%)
Length = 852
Score = 32.7 bits (73), Expect = 0.54
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +3
Query: 506 PRGPNLTSSANAPPPPAHTSTPS 528
PR PNL S+ PPPP H + PS
Sbjct: 288 PRLPNLLDSSTQPPPPRHRAPPS 356
>TC223243 weakly similar to GB|AAT41833.1|48310526|BT014850 At3g45020
{Arabidopsis thaliana;} , partial (32%)
Length = 409
Score = 27.7 bits (60), Expect(2) = 0.60
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -3
Query: 467 EEDPRPSPK-RLNSSEPSGTIPAQHGLVDGSLSRPIVISSPRGPNLTSSANAPPPPAHTS 525
+ +PRP P R S P Q G P + R P SSA +P PP T
Sbjct: 272 KREPRPRPHLRCRHSSSRSPSPRQSG--------PHLHLPLRAPAPPSSAASPTPPRRTP 117
Query: 526 TPS 528
PS
Sbjct: 116 PPS 108
Score = 23.5 bits (49), Expect(2) = 0.60
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -2
Query: 408 FYWTQGARQIIDPSEDSLTP 427
++W QG ++ P+ ++LTP
Sbjct: 342 YFWGQGEPELRSPATNTLTP 283
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,016,718
Number of Sequences: 63676
Number of extensions: 498769
Number of successful extensions: 4745
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4651
length of query: 681
length of database: 12,639,632
effective HSP length: 104
effective length of query: 577
effective length of database: 6,017,328
effective search space: 3471998256
effective search space used: 3471998256
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0103.2