BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.10
(418 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC212535 38 0.007
TC207354 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat prot... 35 0.063
TC205954 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partia... 34 0.11
TC207353 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat prot... 33 0.24
BI700472 similar to GP|22497402|gb| transaldolase-like protein {... 32 0.41
TC224759 similar to UP|Q9SPF3 (Q9SPF3) Ripening induced protein ... 32 0.53
TC226338 similar to UP|Q41123 (Q41123) PVPR3 protein, partial (92%) 32 0.53
BQ629807 32 0.69
TC208972 32 0.69
TC228519 weakly similar to UP|Q9VYS6 (Q9VYS6) CG1840-PA (LD12750... 32 0.69
TC227485 similar to UP|Q6NKU3 (Q6NKU3) At1g55340, partial (40%) 32 0.69
TC211118 similar to UP|Q6Z309 (Q6Z309) Remorin protein-like, par... 31 0.91
TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxida... 31 0.91
TC215903 similar to UP|Q9M7N4 (Q9M7N4) MFP1 attachment factor 1,... 31 1.2
BU964708 weakly similar to GP|9294672|dbj hydoxyethylthiazole ki... 31 1.2
TC215141 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 31 1.2
TC226386 homologue to UP|Q9SAW3 (Q9SAW3) P-type H+-ATPase, parti... 30 1.5
TC226025 similar to UP|RK25_PEA (P11892) 50S ribosomal protein C... 30 2.0
TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light rec... 30 2.0
TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 30 2.0
>TC212535
Length = 757
Score = 38.1 bits (87), Expect = 0.007
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +1
Query: 67 VLHNINVAPSQLHPNSWAFLRCFEILCDAIHQEPEPSTFFYFYRVSVQPSPQRSWVSL 124
VLH N APSQLHPN ++ F IL EP F + ++ R W+ L
Sbjct: 226 VLHIPNTAPSQLHPNG*VAIQAFCILYRFFRMEPTTGLFLHHFQT-------RKWIKL 378
>TC207354 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat protein 5,
partial (57%)
Length = 1124
Score = 35.0 bits (79), Expect = 0.063
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Frame = +2
Query: 263 PRPSPK------RLNSGEPSGTIPAQHGLVDGSLS-RPTVISSPLGPNLTSSANAPP--- 312
P PSP +S P+ T PA+ G ++S RP SS + P L+ S N+PP
Sbjct: 518 PCPSPPSTTTATETSSSPPATTAPARFGTPKPAIS*RP---SSKIRPLLSPSPNSPPMAS 688
Query: 313 ---PPVHTSTLSSGSVSRG 328
PP+ T+ LS G++ G
Sbjct: 689 SFSPPLSTTLLSYGTMGVG 745
>TC205954 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial (89%)
Length = 958
Score = 34.3 bits (77), Expect = 0.11
Identities = 25/75 (33%), Positives = 33/75 (43%), Gaps = 7/75 (9%)
Frame = -1
Query: 251 QAGRKRPLGEEDPRPSPKRLNSGEPSGTIPAQHGL-VDGSLSRPTVISSPLGPNLTSSAN 309
+A + L D P P PS ++PAQ + SLS P+ SSPL P S+
Sbjct: 739 RASPRDSLARSDSPPPPSYPRRTSPSQSVPAQRNSPLSASLSVPSPGSSPLPPPPPSTPR 560
Query: 310 AP------PPPVHTS 318
P PPP +S
Sbjct: 559 TPRTPASAPPPAMSS 515
>TC207353 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat protein 5,
partial (58%)
Length = 898
Score = 33.1 bits (74), Expect = 0.24
Identities = 29/89 (32%), Positives = 41/89 (45%), Gaps = 13/89 (14%)
Frame = +1
Query: 253 GRKRPLGEEDPRPSPKRL------NSGEPSGTIPAQHGLVDGSLS-RPTVISSPLGPNLT 305
G L P PSP +S P+ PA+ G + ++S RP SS + P L+
Sbjct: 91 GNASTL*RATPCPSPPSTTTATEPSSSPPATMAPARFGTPEPAIS*RP---SSKIRPPLS 261
Query: 306 SSANAPP------PPVHTSTLSSGSVSRG 328
S N+PP PP+ T+ LS G+ G
Sbjct: 262 PSPNSPPTASSFSPPLLTTPLSYGTTGVG 348
>BI700472 similar to GP|22497402|gb| transaldolase-like protein {Arabidopsis
lyrata}, partial (26%)
Length = 422
Score = 32.3 bits (72), Expect = 0.41
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = +1
Query: 257 PLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVH 316
P E+DP PSP R + +IP L+ L+ P +S PL P S PP
Sbjct: 13 PFTEQDPPPSPSRFVPHQLFASIPTAPSLL---LALPLPLSLPLRP--LSWTLCPPSARS 177
Query: 317 TSTLSSGSVSRGFSCSLTLT 336
T S +S+ F L L+
Sbjct: 178 FPTPSFSMISKSFLQLLLLS 237
>TC224759 similar to UP|Q9SPF3 (Q9SPF3) Ripening induced protein (Fragment),
partial (78%)
Length = 427
Score = 32.0 bits (71), Expect = 0.53
Identities = 24/73 (32%), Positives = 32/73 (42%)
Frame = +2
Query: 257 PLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVH 316
P E+DP PSP R + +IP L+ L+ P +S PL P S PP
Sbjct: 20 PFTEQDPPPSPSRFVPHQLFASIPTATSLL---LALPLPLSLPLRP--LSWTLCPPSARS 184
Query: 317 TSTLSSGSVSRGF 329
T S +S+ F
Sbjct: 185 FPTPSFSMISKSF 223
>TC226338 similar to UP|Q41123 (Q41123) PVPR3 protein, partial (92%)
Length = 860
Score = 32.0 bits (71), Expect = 0.53
Identities = 23/64 (35%), Positives = 28/64 (42%)
Frame = +2
Query: 263 PRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVHTSTLSS 322
PR + L S PS T PA P P PNL S+ PPPP+H + S
Sbjct: 140 PRKTTLSLRSPNPSST-PAP----------PPPPPPPRFPNLLDSSMQPPPPLHRAPQSD 286
Query: 323 GSVS 326
S+S
Sbjct: 287 PSLS 298
>BQ629807
Length = 430
Score = 31.6 bits (70), Expect = 0.69
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 68 LHNINVAPSQLHPNSWAFLRC 88
LH + V PS +HP SW LRC
Sbjct: 367 LHQLLVLPSVMHPMSWQMLRC 429
>TC208972
Length = 1190
Score = 31.6 bits (70), Expect = 0.69
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 68 LHNINVAPSQLHPNSWAFLRC 88
LH + V PS +HP SW LRC
Sbjct: 250 LHQLLVLPSVIHPMSWQMLRC 312
>TC228519 weakly similar to UP|Q9VYS6 (Q9VYS6) CG1840-PA (LD12750p), partial
(23%)
Length = 438
Score = 31.6 bits (70), Expect = 0.69
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 259 GEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPV 315
G E P+P R N GE + P + G + P ++ P GP L PPPP+
Sbjct: 108 GPEHHNPAPLRENLGEEACHRPPEEGAPQ---ALPDILHLP-GPRLPGPGPVPPPPM 266
>TC227485 similar to UP|Q6NKU3 (Q6NKU3) At1g55340, partial (40%)
Length = 925
Score = 31.6 bits (70), Expect = 0.69
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 6 QTKSSKRNVVAATPLRASSPLERPWL---RPKDDFVGAP--HFFYVYGYMFPNLKIKFPF 60
Q K K+N V + P PW+ PK + V +P +F++Y Y F LK
Sbjct: 25 QKKKKKKNSV*NS---CXLPPTHPWI*INPPKVNSVNSPLPSYFFIYNYYFLTLKYNLSE 195
Query: 61 SPFICSVLHNI 71
F+C + +++
Sbjct: 196CFFLCPIYYSV 228
>TC211118 similar to UP|Q6Z309 (Q6Z309) Remorin protein-like, partial (14%)
Length = 832
Score = 31.2 bits (69), Expect = 0.91
Identities = 17/48 (35%), Positives = 24/48 (49%)
Frame = -2
Query: 20 LRASSPLERPWLRPKDDFVGAPHFFYVYGYMFPNLKIKFPFSPFICSV 67
L A+SP++R WL P + + +PNLK+ PF F SV
Sbjct: 480 LSANSPMQRFWLPPSESWKSP-----TLSLQYPNLKLWLPFYYFSLSV 352
>TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxidase ATP26a
{Arabidopsis thaliana;} , partial (49%)
Length = 731
Score = 31.2 bits (69), Expect = 0.91
Identities = 23/78 (29%), Positives = 32/78 (40%)
Frame = +3
Query: 257 PLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVH 316
P PRPSP S P+ T P+ S + +SSP + +PPPP
Sbjct: 240 PPSSSPPRPSPGP--SATPTSTSPSPATPSTSSSAPRPPLSSPAPTPSPAPTFSPPPPAT 413
Query: 317 TSTLSSGSVSRGFSCSLT 334
+S S+ S S + T
Sbjct: 414 SSPCSAAPSSPSSSAAAT 467
>TC215903 similar to UP|Q9M7N4 (Q9M7N4) MFP1 attachment factor 1, partial
(64%)
Length = 780
Score = 30.8 bits (68), Expect = 1.2
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 27/100 (27%)
Frame = +3
Query: 255 KRPLGEEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISS-------PLGPNLTS- 306
K PL P+ +P L P+ +G + + P+ ++S P PN+T
Sbjct: 96 KTPLRHRPPKTNPSPLTPSSAPPASPSAYGPPLSARATPSSLASSKPYPPPPSSPNVTGQ 275
Query: 307 -------------------SANAPPPPVHTSTLSSGSVSR 327
S APPPP T + SS S+ R
Sbjct: 276 CPPTRPPLPPARSRTRPFPSPPAPPPPTTTGSRSSRSIPR 395
>BU964708 weakly similar to GP|9294672|dbj hydoxyethylthiazole kinase-like
protein {Arabidopsis thaliana}, partial (48%)
Length = 449
Score = 30.8 bits (68), Expect = 1.2
Identities = 23/68 (33%), Positives = 29/68 (41%)
Frame = +2
Query: 260 EEDPRPSPKRLNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLTSSANAPPPPVHTST 319
+ P+PS R + G ++P H S P SSP SS APPPP T
Sbjct: 23 QTQPKPSGVRRHGGFSPRSVPNPHSFNASPTSSPWT-SSPT----PSSPPAPPPPCSTPP 187
Query: 320 LSSGSVSR 327
SS + R
Sbjct: 188 RSSPTSPR 211
>TC215141 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(89%)
Length = 1743
Score = 30.8 bits (68), Expect = 1.2
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Frame = +2
Query: 271 NSGEPSGTIPAQHGLVDGSLSRPTVISS----PLGPNLTSSANAPPPPVHTSTLSSGSVS 326
+S PS T+P+ + S PT +S P P + SA PPP T+ S S+S
Sbjct: 155 SSSSPSTTLPSPPPTPPTATSTPTPTTSSPPPPSAPGRSRSATPPPPAAPTA---SPSLS 325
Query: 327 RGFSCSLTLTS 337
G S T+
Sbjct: 326 LGLRASWAATA 358
>TC226386 homologue to UP|Q9SAW3 (Q9SAW3) P-type H+-ATPase, partial (33%)
Length = 1352
Score = 30.4 bits (67), Expect = 1.5
Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 11/55 (20%)
Frame = +2
Query: 46 VYGYMFPNLKIKFPFSPFICSVLHNIN-----------VAPSQLHPNSWAFLRCF 89
V+G+MF L KF FSPF+ ++ +N V PS L P+SW F
Sbjct: 71 VFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPL-PDSWKLQEIF 232
>TC226025 similar to UP|RK25_PEA (P11892) 50S ribosomal protein CL25,
chloroplast precursor, partial (79%)
Length = 726
Score = 30.0 bits (66), Expect = 2.0
Identities = 23/61 (37%), Positives = 27/61 (43%), Gaps = 9/61 (14%)
Frame = +1
Query: 292 RPTVISS--PLGPNLT-------SSANAPPPPVHTSTLSSGSVSRGFSCSLTLTSAQMAR 342
+PTV PL P+ T SSA PPP S S S FSCSL S+ +
Sbjct: 418 KPTVYDPLPPLPPDWTLVIPADASSAPVTPPPPTPSA*SLSRYSLSFSCSLIFNSSSFSF 597
Query: 343 M 343
M
Sbjct: 598 M 600
>TC216000 similar to UP|O22253 (O22253) Photolyase/blue-light receptor
(Photolyase/blue light photoreceptor PHR2), partial
(84%)
Length = 1641
Score = 30.0 bits (66), Expect = 2.0
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 256 RPLGEEDPRPSPKR-LNSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNL-TSSANAPPP 313
+P + P+P P S P +P + P S+PL P+L T+ A P P
Sbjct: 78 QPSSKSQPKPHPSHTFLSPPPLLLLPKP----PSNPPSPPTPSTPLSPSLPTAPATLPTP 245
Query: 314 PVHTSTLSSGSVSRGFSCSLT 334
P + SSGS + S +++
Sbjct: 246 PPSAAPPSSGSATTSASSTMS 308
>TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(91%)
Length = 1885
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 2/56 (3%)
Frame = +1
Query: 271 NSGEPSGTIPAQHGLVDGSLSRPTVISSPLGPNLT--SSANAPPPPVHTSTLSSGS 324
+S PS T+P+ + S PT SSP P S +A PPP+ T S S
Sbjct: 199 SSSSPSTTLPSPQTSPPTATSTPTPTSSPPPPPSPPGRSRSATPPPLAAPTASPSS 366
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,972,328
Number of Sequences: 63676
Number of extensions: 376024
Number of successful extensions: 2940
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2919
length of query: 418
length of database: 12,639,632
effective HSP length: 100
effective length of query: 318
effective length of database: 6,272,032
effective search space: 1994506176
effective search space used: 1994506176
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0103.10