BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0102a.7
(1496 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 723 0.0
TC234828 235 1e-61
BU549069 176 9e-44
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ... 171 2e-42
NP395548 reverse transcriptase [Glycine max] 162 1e-39
CF922488 158 2e-38
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 152 1e-36
NP395547 reverse transcriptase [Glycine max] 151 2e-36
TC211627 84 2e-33
BI425021 120 5e-27
CO982196 113 7e-25
BE802896 107 3e-23
NP334778 reverse transcriptase [Glycine max] 105 1e-22
BI317507 102 2e-21
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 96 9e-20
AW570005 94 5e-19
BQ273711 94 5e-19
BI424213 92 1e-18
BQ627806 57 4e-15
BM084967 80 9e-15
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 723 bits (1865), Expect = 0.0
Identities = 478/1496 (31%), Positives = 754/1496 (49%), Gaps = 44/1496 (2%)
Frame = +1
Query: 39 VAAQNHAEENARRVQREEREQAAAQTRGLN-DFKRQDPPKFSGGFDPEEADLWLQELEKI 97
+ +H N+++ E+++++ Q R + DF R FD + W+ + E+
Sbjct: 220 IPMSSHGASNSQK----EQQRSSFQVRSVKLDFPR---------FDGKNVMDWIFKAEQF 360
Query: 98 FTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSAR 157
F + T ++ A+ L + W++ M++ +W+ F A L+ F SA
Sbjct: 361 FDYYATPDADRLIIASVHLDQDVVPWYQ----MLQKTEPFSSWQAFTRA-LELDFGPSAY 525
Query: 158 AAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQ 217
A +L Q TV EY + +L + + + F+ GL E+ R V+
Sbjct: 526 DCPRATLFKLNQSA-TVNEYYMQFTALVNRVDGLSAEA----ILDCFVSGLQEEISRDVK 690
Query: 218 PLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQG-SGGPARTNQGRGDKGRYFQKKPY 276
+ V K E + K + + L + + + T + + KP
Sbjct: 691 AMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTSNTSATQKYPPTNQKNDNPKPN 870
Query: 277 VRPQGRGTASGSFYPTGENA--IAPRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNC 334
+ P ++ F +N I+P + + + C+ C++K A CP +M
Sbjct: 871 LPPLLPTPSTKPFNLRNQNIKKISPAEIQLRREKNLCYFCDEKFSPAHKCPNRQVMLLQL 1050
Query: 335 NKPGHLARDCRIPKVEDAANVVGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLI 394
+ D ++ E+A S++ G IR T ++ G ++
Sbjct: 1051 EETDEDQTDEQVMVTEEANMDDDTHH-------LSLNAMRGSNGVGTIRFTGQVGGIAVK 1209
Query: 395 ALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKKFI 454
L D G++ +FI A LKL V P +L V + L + P ++
Sbjct: 1210 ILVDGGSSDNFIQPRVAQVLKLPVEPAP-NLRVLVGNGQILSAEGIVQQLPLHIQGQEVK 1386
Query: 455 ANLICLPLKGLDVIIGMDWLSH--HHVLLDCA--------NKVVIFPDAGLAEFLNS--- 501
+ L + G DVI+G WL+ HV A +K + G +E +
Sbjct: 1387 VPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGEGNSEATQAQLH 1566
Query: 502 YFSKLSLRKGALSSLMSTTVM-EAKENGIQGIA---------VVQEFEDVFPEDVPG-IP 550
+F +L K + E E+ ++ + ++ + VF VP +P
Sbjct: 1567 HFRRLQNTKSIEECFAIQLIQKEVPEDTLKDLPTNIDPELAILLHTYAQVFA--VPASLP 1740
Query: 551 PVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLV 610
P R+ + I + G+GP+ + PYR + +++ ++++ +G I+PS SP+ P+LLV
Sbjct: 1741 PQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLPILLV 1920
Query: 611 KKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDE 670
KKKDG R C DYR LN +T+K+ +P+P +D+L+D+L GA FSK+DLRSGYHQI V+ E
Sbjct: 1921 KKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPE 2100
Query: 671 DIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNL 730
D +KTAFRT +GHYE+LVMPFG+TNAPA F MN+IF L +FV+VF DDILIYS +
Sbjct: 2101 DREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASW 2280
Query: 731 EEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDR 790
++H +HL VLQ L++ L+A +KC F EV +LGH +S G++++ +KV+ VL W
Sbjct: 2281 KDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPT 2460
Query: 791 PKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTT 850
P V +R F+GL GYYRRFI+ +A IAGPLT L +K+ F W + E +F +K+ +T
Sbjct: 2461 PNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDS-FLWNNEAEAAFVKLKKAMTE 2637
Query: 851 APVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVV 910
APVL+LP +P+ + DAS G+G VL Q+ +AY S++L + + EL A+
Sbjct: 2638 APVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAIT 2817
Query: 911 FALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANV 970
AL +RHYL G+ F + +D +SLK L DQ Q+ W+ YDF + Y PGK N
Sbjct: 2818 EALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQ 2997
Query: 971 VADALSRQTIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQL 1030
ADALSR + S S FL E++ + +
Sbjct: 2998 AADALSRMFMLAWS-------------------------------EPHSIFLEELRARLI 3084
Query: 1031 LDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPG 1090
D L + G + +L K RV +P + E+ IL E H S + H G
Sbjct: 3085 SDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAG 3264
Query: 1091 STKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISM 1150
T+ LK F+WP M+++V Y+ CL CQ+AK + PAG+LQ L +P+ W+ ++M
Sbjct: 3265 ITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAM 3444
Query: 1151 DFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIV 1210
DF+ LP I V++DRLTK AHFIP+K +N + +A+ +++ IV+LHG+P SIV
Sbjct: 3445 DFITGLP-NSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIV 3621
Query: 1211 SDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWD 1270
SDRD FTS FW+ L + GT L +SSAYHPQ+DGQ+E + LE LR + + W
Sbjct: 3622 SDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWV 3801
Query: 1271 ELLPLIEFTYNNSFHASIGMAPYEALYGRRCRT---PLCWFQDGEHLLVGPELVQQTTEK 1327
+ LP EF YN ++H S+GM P+ ALYGR T C D E+ +Q T++
Sbjct: 3802 KALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDD------PAEVREQLTDR 3963
Query: 1328 ---VKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAI-KSRKLTPK 1383
+ +++ + +Q K AD +R ++ F+ GD V +++ P + K++KL+ +
Sbjct: 3964 DALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMR 4143
Query: 1384 FIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLR--------KYIPDPSHIIKEDDI 1435
+ GP++++ ++G VAY++ LP ++IH V HVSQL+ Y+P P + + +
Sbjct: 4144 YFGPFKVLAKIGDVAYKLELPS-AARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPV 4320
Query: 1436 QLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYP 1490
+ P++I RI + Q+ + V W N + +ATWE E +K YP
Sbjct: 4321 ---------MQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYP 4461
>TC234828
Length = 857
Score = 235 bits (600), Expect = 1e-61
Identities = 120/254 (47%), Positives = 166/254 (65%), Gaps = 1/254 (0%)
Frame = +3
Query: 354 NVVGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATR 413
N + RP RV+++SG+EA D LIR C IA L L+DSGATHSFI AC R
Sbjct: 96 NNISGGRPKVPSRVFAMSGSEAAASDDLIRGKCLIADKLLDVLYDSGATHSFISHACVER 275
Query: 414 LKLEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKKFIANLICLPLKGLDVIIGMDW 473
L L ++LP+D+ VSTP S+ + T+ CL+CP + + F+A+LICLPL LDVI+GMDW
Sbjct: 276 LGLCATELPYDMVVSTPTSEPVTTSRVCLKCPIIVEGRSFMADLICLPLAHLDVILGMDW 455
Query: 474 LSHHHVLLDCANKVVIF-PDAGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGI 532
LS +H+ LDC K+++F D +E L + ++ + +E ++ + I
Sbjct: 456 LSTNHIFLDCKEKMLVFGGDVVPSEPLKEDAANEETEDVRTYMVLFSMYVE-EDAEVSCI 632
Query: 533 AVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTK 592
VV EF +VFP+DV +PP R++EF ID+VPG P+SIAPYRM+P EL E+K+Q++DL
Sbjct: 633 PVVSEFPEVFPDDVCELPPEREVEFIIDVVPGANPVSIAPYRMSPVELAEVKAQVQDLLS 812
Query: 593 KGFIRPSVSPWGAP 606
K F+RPS SPWGAP
Sbjct: 813 KQFVRPSASPWGAP 854
>BU549069
Length = 615
Score = 176 bits (445), Expect = 9e-44
Identities = 83/132 (62%), Positives = 106/132 (79%), Gaps = 1/132 (0%)
Frame = -1
Query: 1363 LRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKY 1422
L+VTP TGVG+A+KSRKLTP FIG +QI++R VAY+IALPP LS +H+V HVSQLR Y
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLSNLHNVFHVSQLRMY 436
Query: 1423 IPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIWNQVTG-DATWEL 1481
I DPSH++K DD+Q+++NL++E P+RIE+RR K LR K+ PLVKVIW +G DATWEL
Sbjct: 435 IHDPSHVVKLDDVQVKENLTYETLPLRIEDRRTKHLRRKENPLVKVIWGGTSGEDATWEL 256
Query: 1482 EEKMKEQYPELF 1493
E +M+ YP LF
Sbjct: 255 ESQMRVAYPSLF 220
>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo}, partial
(9%)
Length = 410
Score = 171 bits (433), Expect = 2e-42
Identities = 80/133 (60%), Positives = 106/133 (79%)
Frame = -3
Query: 1344 SYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIAL 1403
SY D RR++LEFE GDHVFLRVTP TGVGRA+KS KLTP FIGP+QI+++V VAY+IAL
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229
Query: 1404 PPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQV 1463
PP L+ +H+V HVSQ+ KYI DPSH++ D +Q+++NL+ E P+RI++ R K LR K++
Sbjct: 228 PPSLTSLHNVFHVSQIHKYINDPSHMVNLDVVQVKENLAHETLPLRIKDMRTKHLRGKEI 49
Query: 1464 PLVKVIWNQVTGD 1476
LVKVIW +G+
Sbjct: 48 LLVKVIWGGASGE 10
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 162 bits (410), Expect = 1e-39
Identities = 94/254 (37%), Positives = 141/254 (55%), Gaps = 19/254 (7%)
Frame = +1
Query: 583 LKSQLEDLTKKGFIRP-SVSPWGAPVLLVKKKDGRS------------------RLCVDY 623
++ ++ L + G I P S S W +PVL+V KK+G + +LC+DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 624 RQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGH 683
R+LN+ T K+ +PLP +D ++++L G A + +D GY+QI V +D +K AF +G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 684 YEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQV 743
+ Y +PFG+ NAP F M IF +++ + VF+DD ++ +LE + L VLQ
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 744 LREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGL 803
E L N KC F + E LGH IS GI VD +K++ + P V IRSF+G
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 804 AGYYRRFIEGFAKI 817
A +YRRFI+ F K+
Sbjct: 721 ARFYRRFIKDFTKV 762
>CF922488
Length = 741
Score = 158 bits (399), Expect = 2e-38
Identities = 91/245 (37%), Positives = 138/245 (56%)
Frame = +3
Query: 610 VKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKD 669
V K+DG+ +CVDYR LN + K+ +PLP I+ L+D + FS +D SGY+QI++
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 670 EDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRN 729
ED++KT F T +G + Y M FG+ N A + M +F + + + V++DD+++ SR
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 730 LEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWD 789
EEH +LR++ + LR+ L N AKC F ++ K L + S GI VD +KV+ +L
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 790 RPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLT 849
+P T ++ F+G Y RFI PL L KNQ W DC +F+ +K+ L
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 850 TAPVL 854
VL
Sbjct: 723 NPHVL 737
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 152 bits (384), Expect = 1e-36
Identities = 75/161 (46%), Positives = 103/161 (63%)
Frame = +1
Query: 792 KTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTA 851
K+V DIRSF GLA +YRRF+ F+ +A PL +L +KN F W E EQ+F +KE+LT A
Sbjct: 106 KSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLTKA 285
Query: 852 PVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVF 911
PVL LP + +E+ CDAS G+ VL+Q +AY S +L NYPT+D EL A++
Sbjct: 286 PVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYALIR 465
Query: 912 ALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWME 952
A + W H+L F + SDH+SLKY+ + LN R +W+E
Sbjct: 466 APQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKWVE 588
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 151 bits (382), Expect = 2e-36
Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 19/254 (7%)
Frame = +1
Query: 583 LKSQLEDLTKKGFIRP-SVSPWGAPVLLVKKKDG------------------RSRLCVDY 623
++ ++ L + G I P S S W +PV +V KK G R R+C+DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 624 RQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGH 683
R+LN+ T K+ YPLP +D ++ +L + + +D SGY+QI V +D +KTAF +
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 684 YEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQV 743
+ Y MPFG+ NA F M IF +++ + VF+DD + + +L +VLQ
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 744 LREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGL 803
+ L N KC F ++E LGH ISK GI V K++ + P V I SF+G
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 804 AGYYRRFIEGFAKI 817
G+YRRFI+ F K+
Sbjct: 721 VGFYRRFIKDFTKV 762
>TC211627
Length = 1034
Score = 84.3 bits (207), Expect(2) = 2e-33
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Frame = +3
Query: 1334 KMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIER 1393
+++ Q K AD+ RR+L F GD V++R+ P KL+ +F GPYQI R
Sbjct: 357 RLQKYQDSMKRIADSHRRDLTFNIGDWVYVRL*PYRQTSIQSTYTKLSKRFYGPYQIQAR 536
Query: 1394 VGKVAYRIALPPFLSKIHDVLHVSQLR-KYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEE 1452
VG+VAYR+ LPP SKIH + HVS L+ + P P ++ ++ V P++ +
Sbjct: 537 VGQVAYRLQLPP-TSKIHPIFHVSLLKVHHGPIPPELLALPPFSTTNHPL--VQPLQFLD 707
Query: 1453 RRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQY 1489
++ + +P V V W N D TWE ++K+ Y
Sbjct: 708 WKMDESTTPPIPQVLVQWTNLAPEDTTWESWTQLKDIY 821
Score = 78.6 bits (192), Expect(2) = 2e-33
Identities = 40/78 (51%), Positives = 47/78 (59%)
Frame = +2
Query: 1217 FTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLI 1276
F S W L GTKLR S+AYHPQTDGQTE + LE LRA V D + W + L L
Sbjct: 5 FISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSLA 184
Query: 1277 EFTYNNSFHASIGMAPYE 1294
E YN S H+ IG +P+E
Sbjct: 185 E*CYNTSVHSGIGFSPFE 238
>BI425021
Length = 426
Score = 120 bits (301), Expect = 5e-27
Identities = 61/140 (43%), Positives = 86/140 (60%)
Frame = -1
Query: 1138 LDVPEWKWDSISMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVA 1197
L VP+ W+ +SMDF+V LP +I+V+V+R +K H + T+ +A +++
Sbjct: 417 LPVPQRPWEDLSMDFIVGLPPYHGH-TTIFVVVNRFSKGIHLGTLPTSHTAHMVASLFLN 241
Query: 1198 EIVRLHGVPSSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDL 1257
+++LHG P SIVSDRDP F SHFW+ L GT LR+SSAYHPQTDGQTE + +E
Sbjct: 240 IVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVIEQY 61
Query: 1258 LRACVLDSQESWDELLPLIE 1277
LRA V + +P +E
Sbjct: 60 LRAFVHGRPRNLGRFIPWVE 1
>CO982196
Length = 812
Score = 113 bits (282), Expect = 7e-25
Identities = 64/167 (38%), Positives = 93/167 (55%)
Frame = +1
Query: 1055 DNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGMKKNVAEY 1114
D ++ K +PL +L E S L H G + ++ + +W GMKK +Y
Sbjct: 334 DRLVLSKNSTKIPL-------LLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDY 492
Query: 1115 VAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIWVIVDRLT 1174
VAAC C++ K PAG+L L +P W ISMDF+ LP + + D+I V+VDRLT
Sbjct: 493 VAACEICRRNKTSTLSPAGLL*LLPIPTKVWTDISMDFIGGLPKAQGK-DNILVVVDRLT 669
Query: 1175 KSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHF 1221
K AHF + + + +A++++ E+VRLHG P+SIVSD F S F
Sbjct: 670 KYAHFFALSHPYTAKEVAELFIKELVRLHGFPASIVSDXXRLFMSLF 810
>BE802896
Length = 416
Score = 107 bits (268), Expect = 3e-23
Identities = 57/137 (41%), Positives = 80/137 (57%), Gaps = 4/137 (2%)
Frame = -2
Query: 799 SFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQ 858
SF+G AG+YRRFI F K+A PL+ L +K F + + C+ +F +K L T P++ P
Sbjct: 415 SFLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPD 236
Query: 859 EEEPYEVYCDASYQGLGCVLMQH----RKAVAYSSRQLKIHERNYPTHDLELAAVVFALK 914
P+E+ CDAS LG VL Q + + YSSR L + NY T + EL A+VFAL+
Sbjct: 235 WTAPFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALE 56
Query: 915 IWRHYLYGSTFTVFSDH 931
+ YL G+ V+ DH
Sbjct: 55 KFHSYLLGTRIIVYIDH 5
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 105 bits (262), Expect = 1e-22
Identities = 56/143 (39%), Positives = 86/143 (59%)
Frame = +3
Query: 618 RLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAF 677
R+CVDYR LN+ + K+ +PLP ID LM + A+FS +D SGY+QI++ ED++KT F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 678 RTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHL 737
T +G + Y VM FG+ N A + M +F + + + ++D+++ SR EEH +L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 738 RQVLQVLREKVLYANAAKCEFWL 760
+ + LR+ L N KC F L
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>BI317507
Length = 359
Score = 102 bits (253), Expect = 2e-21
Identities = 54/113 (47%), Positives = 76/113 (66%), Gaps = 1/113 (0%)
Frame = -1
Query: 722 DILIYSRNLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSK 781
+ILIYS + + H HL VL VL+++ L AN KC F +++LGHVISK+ +A+D +K
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174
Query: 782 VETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKIA-GPLTKLTRKNQPFAW 833
V++V+ W PK V + SF+ L GYYR+FI+ + K+A PLT LT KN F W
Sbjct: 173 VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLT-KNDGFKW 18
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 96.3 bits (238), Expect = 9e-20
Identities = 49/133 (36%), Positives = 80/133 (59%)
Frame = +2
Query: 653 FSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFL 712
FS +D SGY+QI + ED++KT F T +G + Y VM FG+ N A + M +FH +
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 713 DRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISK 772
+ + V++DD++ SR EH +L ++ L++ L N KC F ++ K LG ++S+
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 773 EGIAVDPSKVETV 785
+GI +DP KV+ +
Sbjct: 362 KGIEIDPEKVKAL 400
>AW570005
Length = 413
Score = 94.0 bits (232), Expect = 5e-19
Identities = 50/132 (37%), Positives = 75/132 (55%)
Frame = -2
Query: 791 PKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTT 850
P+T +R F+ L G+YRRFI+G+A +A PL+ L K+ F W+ + + +FQ +K +T
Sbjct: 406 PRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDS-FVWSPEADVAFQALKNVVTN 230
Query: 851 APVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVV 910
VL LP +P+ V DAS +G VL Q +A+ S++ T+ ELAA+
Sbjct: 229 TLVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYVHELAAIT 50
Query: 911 FALKIWRHYLYG 922
+K WR YL G
Sbjct: 49 NVVKKWRQYLLG 14
>BQ273711
Length = 409
Score = 94.0 bits (232), Expect = 5e-19
Identities = 45/97 (46%), Positives = 58/97 (59%)
Frame = -2
Query: 55 EEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATY 114
+ER+ A+ RGL F++ PPKFSG +DPE A LWL E EKIF + E KV YAT+
Sbjct: 291 QERDVEPAEYRGLMAFRKNHPPKFSGDYDPEGARLWLAETEKIFEAMGCLEEHKVLYATF 112
Query: 115 LLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKY 151
+L GEAE WW+ + A I W F+ FL+ Y
Sbjct: 111 MLQGEAENWWKFVKPSFVAPGGVIPWNAFKDKFLENY 1
>BI424213
Length = 426
Score = 92.4 bits (228), Expect = 1e-18
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Frame = +1
Query: 1219 SHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEF 1278
SHFWK L LGTKL S+ HPQTDGQT+ +SL LLRA + + +SWDE LP +EF
Sbjct: 4 SHFWKTLWAKLGTKLLFSTTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEF 183
Query: 1279 TYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELV----QQTTEKVKQIQEK 1334
YN H + +P+E +YG TPL D L + + + +E VK++ E+
Sbjct: 184 AYNRGVHRTTKQSPFEVVYGFNPLTPL----DLIPLPLDTSFIHKEGESRSEFVKKMHER 351
Query: 1335 MRTSQSRQKSYADTR----RREL 1353
++ Q T+ R+EL
Sbjct: 352 VKNQIENQTKVYSTKGNRGRKEL 420
>BQ627806
Length = 435
Score = 57.0 bits (136), Expect(2) = 4e-15
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +1
Query: 901 THDLELAAVVFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFT 960
T+ ELAA+ A+K WR YL G F + +DH+SLK L Q Q+ ++ + +D+T
Sbjct: 232 TYVRELAAITVAVKKWRQYLLGHHFVILTDHRSLKELMSQAVQTPEQQIYLARLMGFDYT 411
Query: 961 LLYHPGKA 968
+ Y GKA
Sbjct: 412 IQYRAGKA 435
Score = 44.3 bits (103), Expect(2) = 4e-15
Identities = 21/57 (36%), Positives = 32/57 (55%)
Frame = +3
Query: 831 FAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAY 887
F W E+ +++F +K L APVL LP + V DAS G+G +L Q+ +A+
Sbjct: 21 FHWNEEADRAFSQLKLALCQAPVLGLPDFNSSFVVETDASGIGMGAILSQNHHPLAF 191
>BM084967
Length = 426
Score = 79.7 bits (195), Expect = 9e-15
Identities = 49/125 (39%), Positives = 67/125 (53%)
Frame = -2
Query: 1048 PDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGM 1107
PD V D IL+ G + +P +L E H S H G TK L NF W G+
Sbjct: 374 PDHSVIQDLILK-NGCIWLPSGFSFIPTLLLEYHSSPTDAHIGVTKTMARLSENFTWIGI 198
Query: 1108 KKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIW 1167
+K+V ++VAACL CQ K E QK AG+L L VP W+ +S +F++ L R + +I
Sbjct: 197 RKDVEQFVAACLDCQYTKYEAQKMAGLLCPLPVPCRPWEDLSFNFIIGLSEFR-GYTAIL 21
Query: 1168 VIVDR 1172
V+V R
Sbjct: 20 VVVGR 6
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,644,211
Number of Sequences: 63676
Number of extensions: 859382
Number of successful extensions: 4326
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 4168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4274
length of query: 1496
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1387
effective length of database: 5,698,948
effective search space: 7904440876
effective search space used: 7904440876
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0102a.7