BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.4
(376 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218421 similar to GB|AAQ65192.1|34365761|BT010569 At3g08670 {A... 40 0.001
TC226466 weakly similar to GB|AAD49970.1|5734705|F24J5 F24J5.4 {... 39 0.003
TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell... 39 0.004
TC219140 similar to GB|AAO44047.1|28466877|BT004781 At2g39020 {A... 39 0.005
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 38 0.007
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragme... 38 0.007
TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial ... 30 0.008
TC204862 similar to GB|AAM61695.1|21537354|AY085142 hydroxyproli... 38 0.009
TC235094 similar to UP|PRT3_SCYCA (P30258) Protamine Z3 (Scyllio... 37 0.011
TC232940 homologue to UP|Q7XVJ5 (Q7XVJ5) OJ000126_13.10 protein,... 37 0.015
TC231030 similar to UP|PCD7_MOUSE (Q9WTY1) Programmed cell death... 29 0.015
TC206057 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin, d... 37 0.019
TC214441 37 0.019
TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 36 0.025
TC204252 weakly similar to UP|Q948Y7 (Q948Y7) VMP3 protein, part... 36 0.025
NP005385 DNA-directed RNA polymerase 36 0.025
TC214028 similar to UP|Q9DW99 (Q9DW99) PR102, partial (3%) 36 0.025
TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-... 36 0.032
TC214303 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, pa... 32 0.47
TC214106 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 31 1.0
>TC218421 similar to GB|AAQ65192.1|34365761|BT010569 At3g08670 {Arabidopsis
thaliana;} , partial (46%)
Length = 1256
Score = 40.4 bits (93), Expect = 0.001
Identities = 67/308 (21%), Positives = 113/308 (35%), Gaps = 8/308 (2%)
Frame = +1
Query: 72 SPRKRKQVEASEEKDPSDGDDDDDDEPPPQKKGKKVRIATQVTHLQPTQELARTAPSTRI 131
S R V SE +P+ P + R + +H Q + + S+ +
Sbjct: 220 SKTSRLAVSQSENNNPASR---------PARSSSVTRSSISTSHSQYSSYSSNRHSSSIL 372
Query: 132 TRSVVRASSKFVVLLDDDLNLLDAIYDETNPEPTPVDQPTSHPSPPRASFFQPSIEEEPL 191
S SS + + + + P P +S PS PR + E
Sbjct: 373 NTSSASVSS--YIRPSSPITRSSSSARPSTPSSRPTASRSSTPSKPRPVSTSSTAERNRP 546
Query: 192 CKMLQAGKPSASTSPIILPYNPQTSEPIVSETQAQEIPN-PEKSNSEPQPSDHSNEEPSE 250
Q +PS +S +P N + P S T++ P+ P + +S P S
Sbjct: 547 SS--QGSRPSTPSSRPHIPANLHS--PSASSTRSLSRPSTPTRRSSMPSLSP-------- 690
Query: 251 REVLSPAPTVSFLTNV--LFSSSFDKSEASRQFFQLARERVSEILEHFLTVLSPNRYSGP 308
SP+PT+ LT+ + S+ + + ASR SP+ P
Sbjct: 691 ----SPSPTIGSLTSAGRVSSNGRNSAPASRPS-------------------SPSPRVRP 801
Query: 309 RPEPLVDPDFLIQAVPLASMPHPPPPPRSPLPENNASVSNHS----SDKSQNPETE-TPH 363
P+P+V PDF ++ PP R+ LP+ S + K+ + ET+ +P
Sbjct: 802 PPQPIVPPDFPLET---------PPNLRTTLPDRPVSAGRSRPGGVTMKTNSSETQASPV 954
Query: 364 QNPKTNTS 371
P+ ++S
Sbjct: 955 TMPRRHSS 978
>TC226466 weakly similar to GB|AAD49970.1|5734705|F24J5 F24J5.4 {Arabidopsis
thaliana;} , partial (22%)
Length = 978
Score = 39.3 bits (90), Expect = 0.003
Identities = 58/246 (23%), Positives = 87/246 (34%), Gaps = 8/246 (3%)
Frame = +1
Query: 118 PTQELARTAPSTRITRSVVRASSKFVVLLDDDLNLLDAIYDETNPEPTPVDQPTSHPSP- 176
P LA T+PS+ +V +A+S ++ AI P+P PV P +P
Sbjct: 88 PPTTLAATSPSSGTPPAVTQAASPPTTSNPPTISQPPAI---VAPKPAPVTPPAPKVAPA 258
Query: 177 --PRASFFQPSIEEEPLCKMLQAGK--PSASTSPIILPYNPQTSEPIVSETQAQEIPNPE 232
P+A Q + P + A P P+ P P P ++ T A+ P P
Sbjct: 259 SSPKAPTPQTPPPQPPKVSPVAAPTLPPPLPPPPVATP--PPLPPPKIAPTPAKTSPAPA 432
Query: 233 KSNSEPQPSDHSNEEPSEREVLSPAPTVSFLTNVLFSSSFDKSEASRQFFQLARERVSEI 292
+ + P P+ + + P PT++ V + S R+ R R
Sbjct: 433 PAKATPAPAPAPTKPAPTPAPIPPPPTLAPTPIVEVPAPAPSSHKHRRH----RHR---- 588
Query: 293 LEHFLTVLSPNRYSGPRPEPLV---DPDFLIQAVPLASMPHPPPPPRSPLPENNASVSNH 349
R+ P P P V P A P ++ P SP NA+ SNH
Sbjct: 589 ---------HKRHQAPAPAPTVIHKSP----PAPPDSTAESDTTPAPSPSLNLNAAPSNH 729
Query: 350 SSDKSQ 355
Q
Sbjct: 730 QQRSIQ 747
>TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall
protein gp1 precursor (Hydroxyproline-rich glycoprotein
1), partial (13%)
Length = 1409
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/99 (28%), Positives = 36/99 (36%)
Frame = +3
Query: 160 TNPEPTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPI 219
T P +P P S PSPP A + P + PS + N S
Sbjct: 315 TAPPTSPSPSPPSSPSPPSAPSPSSTAPSPPSASPPTSPSPSPPSPASTASANSPASGSP 494
Query: 220 VSETQAQEIPNPEKSNSEPQPSDHSNEEPSEREVLSPAP 258
S T P+P ++ P PS S PS + SP P
Sbjct: 495 TSRTSPTS-PSPTSTSKPPAPSSSSPA*PSSKPSPSPTP 608
Score = 33.9 bits (76), Expect = 0.12
Identities = 55/200 (27%), Positives = 74/200 (36%), Gaps = 1/200 (0%)
Frame = +3
Query: 161 NPEPTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPIV 220
NP +P + T PSPP S PS PSA++SP P P TS
Sbjct: 201 NPSTSPPHR-TPAPSPP--STMPPSATPP---------SPSATSSPSASPTAPPTSP--- 335
Query: 221 SETQAQEIPNPEKSNSEPQPSDHSNEEPSEREVLSPAPT-VSFLTNVLFSSSFDKSEASR 279
+ P+ S P PS + PS SP+P+ S + +S S SR
Sbjct: 336 ----SPSPPSSPSPPSAPSPSSTAPSPPSASPPTSPSPSPPSPASTASANSPASGSPTSR 503
Query: 280 QFFQLARERVSEILEHFLTVLSPNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPPRSPL 339
+ SP+ S +P P A P +S P P P P SP
Sbjct: 504 -----------------TSPTSPSPTSTSKPPA---PSSSSPA*P-SSKPSPSPTPISPD 620
Query: 340 PENNASVSNHSSDKSQNPET 359
P + + S +S S +P T
Sbjct: 621 P--SPATSTPTSHTSISPIT 674
Score = 33.5 bits (75), Expect = 0.16
Identities = 24/72 (33%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Frame = +3
Query: 301 SPNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPPRSPLPENNASVSNHSSDKSQNPETE 360
SP+ S P P P + P AS PP SP P + AS ++ +S S +P +
Sbjct: 336 SPSPPSSPSPPSAPSPSSTAPSPPSAS----PPTSPSPSPPSPASTASANSPASGSPTSR 503
Query: 361 TPHQNPK-TNTS 371
T +P T+TS
Sbjct: 504 TSPTSPSPTSTS 539
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = +3
Query: 302 PNRYSGPRPEPLVDPDFLIQAVPLASMPHPPP---PPRSPLPENNA-SVSNHSSDKSQNP 357
P + P P P A P + P PP PP +P P + A S + S S +P
Sbjct: 258 PPSATPPSPSATSSPSASPTAPPTSPSPSPPSSPSPPSAPSPSSTAPSPPSASPPTSPSP 437
Query: 358 ETETPHQNPKTNTSA 372
+P N+ A
Sbjct: 438 SPPSPASTASANSPA 482
>TC219140 similar to GB|AAO44047.1|28466877|BT004781 At2g39020 {Arabidopsis
thaliana;} , partial (75%)
Length = 730
Score = 38.5 bits (88), Expect = 0.005
Identities = 36/129 (27%), Positives = 57/129 (43%), Gaps = 15/129 (11%)
Frame = +1
Query: 166 PVDQPTSHPSPPRASF-FQPSIEEEPLCKMLQAGKPSA---STSPIILPYNPQTSEPIVS 221
P + P+ HP PPR F P + P L+ P P++ P + T PI+
Sbjct: 67 PGNHPSLHPHPPRHPFRCSPHPQAHPPDGRLRTPHPPLLRHRVLPLLHPLHFPTL-PILH 243
Query: 222 ETQAQEIPNP-EKSNSEPQP---SDH-------SNEEPSEREVLSPAPTVSFLTNVLFSS 270
++ +P+P + N +P+P + H S++ P ER V +P V+FS
Sbjct: 244 RPPSRSLPHPLPQFNPKPKPFLQTHHQTP*PFQSHQRPRERHVQNPRRCYRCWVCVVFSE 423
Query: 271 SFDKSEASR 279
FD S +R
Sbjct: 424 LFDFSREAR 450
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) , complete
Length = 1826
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Frame = +3
Query: 157 YDETNPEPTPVD---QPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNP 213
Y T+P +P PTS P+++ + PS+ P L P + TSP P +P
Sbjct: 1092 YSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSP 1271
Query: 214 QTS--EPIVSETQAQEIP--------NPEKSNSEPQPSDHSNEEPSE 250
S P S + P +P+ S S PQ S + PS+
Sbjct: 1272 SYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQ 1412
>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragment) , partial
(96%)
Length = 2604
Score = 38.1 bits (87), Expect = 0.007
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Frame = +1
Query: 157 YDETNPEPTPVD---QPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNP 213
Y T+P +P PTS P+++ + PS+ P L P + TSP P +P
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSP 1749
Query: 214 QTS--EPIVSETQAQEIP--------NPEKSNSEPQPSDHSNEEPSE 250
S P S + P +P+ S S PQ S + PS+
Sbjct: 1750 SYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQ 1890
>TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial (66%)
Length = 1340
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/37 (37%), Positives = 16/37 (42%)
Frame = +3
Query: 302 PNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPPRSP 338
P+ Y P P P P P P PPPPP+ P
Sbjct: 864 PHPYPHPHPHPHPHPHPHPHPHPPYVYPSPPPPPKKP 974
Score = 29.6 bits (65), Expect(3) = 0.008
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = +2
Query: 185 SIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPIVSETQAQEIPNPEKSNSEPQPSDHS 244
+IE+E +L S+S IL P TS P+ S + P+P S S PS S
Sbjct: 746 AIEKEEETILLPLSTTSSSKEETILLSLPTTSSPLPSPS-----PSPLPSPSPSPPSSPS 910
Query: 245 NEEPSEREVLSPAPTVS 261
+ P PT S
Sbjct: 911 PTSTPSPSLRLPLPTTS 961
Score = 27.7 bits (60), Expect = 8.8
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Frame = +1
Query: 305 YSGPRPEPLVDPDFLIQAVPLASMPHPPPPPR----SPLPENNASVSNHSSDKSQNPETE 360
YS P P P P P PPPPP+ SP P + + S P +
Sbjct: 142 YSSPPPPKKYPP-----VSPPYHYPSPPPPPKYYYHSPPPPSPSPPKKPYYYHSPPPPSP 306
Query: 361 TPHQNP 366
TP + P
Sbjct: 307 TPPKKP 324
Score = 23.9 bits (50), Expect(3) = 0.008
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Frame = +3
Query: 302 PNRYSGPRPE----PLVDPDFLIQAVPLA-----SMPHPPPPPRSPLPENNAS 345
P +Y P P P P F+ + P + P PPPPP + P AS
Sbjct: 972 PYKYPSPPPPVHHYPHPHPPFVHYSPPPSPKKPYKYPSPPPPPPTNKPYIYAS 1130
Score = 21.6 bits (44), Expect(3) = 0.008
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 161 NPEPTPVDQPTSHPSPP 177
+P P P ++P + SPP
Sbjct: 628 SPPPPPTNKPYIYASPP 678
>TC204862 similar to GB|AAM61695.1|21537354|AY085142 hydroxyproline-rich
glycoprotein-like protein {Arabidopsis thaliana;} ,
partial (15%)
Length = 834
Score = 37.7 bits (86), Expect = 0.009
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 160 TNPEPTPVDQPTSHPSP-PRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEP 218
++P +P TS +P P + F PS P PSAS+ P P++ P
Sbjct: 192 SSPTTSPPSSKTSTTNPKPSNARFAPSTTLLPT--------PSASSIAAKPPSTPRSRSP 347
Query: 219 IVSETQAQEIPNPEKSNSEPQPSDHSNEEPSEREVLSPA 257
T+A +P+P S P P+ S P+ R PA
Sbjct: 348 SARSTRAAPLPSPP---SSPTPTTSSTAPPTVRSTTPPA 455
>TC235094 similar to UP|PRT3_SCYCA (P30258) Protamine Z3 (Scylliorhinine Z3),
partial (76%)
Length = 466
Score = 37.4 bits (85), Expect = 0.011
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = -2
Query: 67 PPDFESPRKRKQVEASEEKDPSDGDDDDDDEPPPQKKGKKVRIATQVTHLQP-TQELART 125
PP+ + + +++ E++D + +DDDDD+ Q++ R+ Q + L+ ++ LA
Sbjct: 375 PPNPNNAEEDDEIDEPEDEDEEEEEDDDDDDVVSQEQSPLSRLREQRSKLETLSRRLASE 196
Query: 126 APSTRITRSVVRASSKFVV-LLDDDLNLLD 154
R+ ++R ++K L++ +L LL+
Sbjct: 195 LVPIRVHDVLIRGNTKTKAWLIEAELKLLE 106
>TC232940 homologue to UP|Q7XVJ5 (Q7XVJ5) OJ000126_13.10 protein, partial
(13%)
Length = 796
Score = 37.0 bits (84), Expect = 0.015
Identities = 23/68 (33%), Positives = 28/68 (40%), Gaps = 4/68 (5%)
Frame = +1
Query: 308 PRPEPLVDPDFLIQAVPLASMPHPPP-PPRSPLPENNASVSNHSSDK---SQNPETETPH 363
P P DP A P PPP PP P P N++ N ++NP + PH
Sbjct: 85 PHPPSTADPPPPPPTASSAPTPSPPPPPPPPPPPPKNSTKPNFFGPPIPLNRNPNAQRPH 264
Query: 364 QNPKTNTS 371
QN TS
Sbjct: 265 QNLAXATS 288
>TC231030 similar to UP|PCD7_MOUSE (Q9WTY1) Programmed cell death protein 7
(ES18), partial (5%)
Length = 493
Score = 28.9 bits (63), Expect(2) = 0.015
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 330 HPPPPPRSPLPENNASVSNHSSDKSQNPETETPHQNPKTNTSAHQ 374
HPPP PLP++ A V + D + P + KT HQ
Sbjct: 95 HPPPQDPPPLPDSEARVRHKLKDLFISSPPPPPLNDEKTIFHNHQ 229
Score = 26.9 bits (58), Expect(2) = 0.015
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 319 LIQAVPLASMPHPPPPPRSP 338
L QA P HPPPPP++P
Sbjct: 7 LHQAQPHHQPRHPPPPPQNP 66
>TC206057 homologue to UP|Q9ZRX1 (Q9ZRX1) Cytosolic chaperonin,
delta-subunit, complete
Length = 1930
Score = 36.6 bits (83), Expect = 0.019
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 329 PHPPPPPRSPLPENNASVSNHSSDKSQNPETETPHQNPKTNT 370
P PPP +PLP +++ + SS S +P TP +P +T
Sbjct: 351 PRTPPPATAPLPSSSSLAPSSSSASSSSPTASTPPSSPTPST 476
>TC214441
Length = 1211
Score = 36.6 bits (83), Expect = 0.019
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 5/118 (4%)
Frame = +2
Query: 159 ETNPEPTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEP 218
E + T V Q T P P + E + ++ +PS++ ++P P+ +
Sbjct: 167 EASSSSTSVSQVTIGPKT*IQKASPPRLTERSMAQVAMLSRPSSAP---LVPDGPKPTAA 337
Query: 219 IVSETQ-----AQEIPNPEKSNSEPQPSDHSNEEPSEREVLSPAPTVSFLTNVLFSSS 271
+VS Q A+ + + +P P+ HS S R + P VS ++ SSS
Sbjct: 338 VVSMVQTAPLLARSVSATARLGPDPSPATHSYVPQSYRNAIMGNPVVSTAASLPHSSS 511
>TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(91%)
Length = 1885
Score = 36.2 bits (82), Expect = 0.025
Identities = 50/212 (23%), Positives = 70/212 (32%), Gaps = 5/212 (2%)
Frame = +1
Query: 164 PTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPIVSET 223
PTP P PSPP S SA+ P+ P +S P +
Sbjct: 265 PTPTSSPPPPPSPPGRS-------------------RSATPPPLAAPTASPSSSPAPLAS 387
Query: 224 QAQEIPNPEKSNSEPQPSDHSNEEPSEREVLSP--APTVSFLTNVLFSS---SFDKSEAS 278
A P P K+ + + S S + P AP N FSS +
Sbjct: 388 SAATAPLPSKNAA----TAFSGSTTSTATTIPP*NAPVRQCSGNTRFSSWKVTLTTPPCL 555
Query: 279 RQFFQLARERVSEILEHFLTVLSPNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPPRSP 338
R L+ S L +P R P P + +P +P+PP P
Sbjct: 556 RSSSTLSPSPTSSTSPLRLASATPCRTPNPTSPPTLLASSTSSRLPNPPIPNPP*SGLHP 735
Query: 339 LPENNASVSNHSSDKSQNPETETPHQNPKTNT 370
P S S+ K+ +P + P NP +T
Sbjct: 736 AP------STASTPKTLSPSSTAP-TNPPAST 810
>TC204252 weakly similar to UP|Q948Y7 (Q948Y7) VMP3 protein, partial (7%)
Length = 472
Score = 36.2 bits (82), Expect = 0.025
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Frame = +3
Query: 139 SSKFVVLLDDDLNLLDAIY---DETNPEPT-PVDQPTSHPS-----PPRASFFQPSIEEE 189
SS F L L +L ++ T P PT P P++ PS PP A PS
Sbjct: 105 SSSFYFLYFPPLPILPSLVLPRSSTAPTPTAPTSPPSAPPSTSPSTPPTAPSPSPS---P 275
Query: 190 PLCKMLQAGKPSASTSPIILPYNPQTSEPIVSETQAQEIPNPEKSNSEP--QPSDHSNEE 247
PL AG P AST P P+ S P P+P + + P + S S
Sbjct: 276 PLLPPPPAGSPGASTLPAAEWPAPKPSSP---SPPPPAPPSPSAATTSPPTRAST*SRPS 446
Query: 248 PSEREVLS 255
PS R LS
Sbjct: 447 PSNRGTLS 470
>NP005385 DNA-directed RNA polymerase
Length = 2934
Score = 36.2 bits (82), Expect = 0.025
Identities = 35/135 (25%), Positives = 54/135 (39%), Gaps = 9/135 (6%)
Frame = +1
Query: 125 TAPSTRITRSVVRASSKFVVLLDDDLNLLDAIYDETNPEPTPVD---QPTSHPSPPRASF 181
T+PS +T +S + Y T+P +P PTS P+++
Sbjct: 2473 TSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAK 2652
Query: 182 FQPSIEEEPLCKMLQAGKPSAS-TSPIILPYNPQTSEPIVSETQAQEIP-----NPEKSN 235
+ PS+ P L P+ S TSP P +P S S T + P +P+ S
Sbjct: 2653 YSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPS--SPTYSPSSPYNSGVSPDYSP 2826
Query: 236 SEPQPSDHSNEEPSE 250
+ PQ S + PS+
Sbjct: 2827 TSPQFSPSAGYSPSQ 2871
>TC214028 similar to UP|Q9DW99 (Q9DW99) PR102, partial (3%)
Length = 542
Score = 36.2 bits (82), Expect = 0.025
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +1
Query: 172 SHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPI----VSETQAQE 227
S P+P Q I P K +A P+ +T+P+ P+T+ P+ + +T+A +
Sbjct: 157 SSPNPDDEYTAQSDITPAPKTKKPKASTPTVTTAPLKKTKAPKTTTPVTTAPLKKTKAPK 336
Query: 228 IPNPEKSNSEPQPSDHSNEEPSE 250
P K P P +E +
Sbjct: 337 TTAPLKKTKAPSPKQQDEDEEQQ 405
>TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (21%)
Length = 943
Score = 35.8 bits (81), Expect = 0.032
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Frame = +1
Query: 157 YDETNPEPTPVDQPTSHP---SPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNP 213
+ +T+P P+P P ++P SPP S PS+ + L S ++SP+ P
Sbjct: 241 FPKTSPSPSPSQSPKANPPTVSPPLPS-PSPSVHSKSL---------SPASSPVPAVGTP 390
Query: 214 QTSEPIVSETQAQEIPNP-----EKSNSEPQPSDHSNEEPSEREVLSPAP 258
S I T A E P S+S P P S+ PS S P
Sbjct: 391 AISPAISIPTLAPETGTPPPSLGPSSSSPPSPGPSSSSPPSPGPSSSSPP 540
>TC214303 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (18%)
Length = 1014
Score = 32.0 bits (71), Expect = 0.47
Identities = 24/88 (27%), Positives = 30/88 (33%)
Frame = +2
Query: 161 NPEPTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPIV 220
+P P P PSPP P P C+ PS ++P P +P P +
Sbjct: 155 SPPPPVYSPPPPPPSPPPCIESPPPPPPPPPCEEHSPPPPSPHSAPYHPPPSPSPPPPPI 334
Query: 221 SETQAQEIPNPEKSNSEPQPSDHSNEEP 248
Q P S P P H N P
Sbjct: 335 -----QYNSPPPPSPPPPTPVYHYNSPP 403
Score = 31.6 bits (70), Expect = 0.61
Identities = 24/102 (23%), Positives = 34/102 (32%)
Frame = +2
Query: 161 NPEPTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTSEPIV 220
+P P P P H PP + P + P + P S P P + P +
Sbjct: 53 SPPPPPPSPPPPHSPPPPPPVY-PYLSPPPPPPVHSPPPPVYSPPP-----PPPSPPPCI 214
Query: 221 SETQAQEIPNPEKSNSEPQPSDHSNEEPSEREVLSPAPTVSF 262
P P + +S P PS HS P P + +
Sbjct: 215 ESPPPPPPPPPCEEHSPPPPSPHSAPYHPPPSPSPPPPPIQY 340
Score = 28.1 bits (61), Expect = 6.8
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Frame = +2
Query: 302 PNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPP-----RSPLPENNASVSNHSSDKSQN 356
P YS P P P P P PPPPP SP P + S H
Sbjct: 164 PPVYSPPPPPP--------SPPPCIESPPPPPPPPPCEEHSPPPPSPHSAPYHPPPSPSP 319
Query: 357 PETETPHQNP 366
P + +P
Sbjct: 320 PPPPIQYNSP 349
>TC214106 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (22%)
Length = 1296
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/106 (25%), Positives = 33/106 (30%), Gaps = 5/106 (4%)
Frame = +1
Query: 162 PEPTPVDQPTSHPSPPRASF-----FQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQTS 216
P P P P PSPP + P P + P S P I P P
Sbjct: 229 PPPPPHSPPPPPPSPPPPVYPYLSPPPPPPVHSPPPPVYSPPPPPPSPPPCIEP--PPPP 402
Query: 217 EPIVSETQAQEIPNPEKSNSEPQPSDHSNEEPSEREVLSPAPTVSF 262
P + P P + +S P PS H P P V +
Sbjct: 403 PPCIEPPPPPPSPPPCEEHSPPPPSPHPAPYHPPPSPSPPPPPVQY 540
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/93 (26%), Positives = 30/93 (31%)
Frame = +1
Query: 156 IYDETNPEPTPVDQPTSHPSPPRASFFQPSIEEEPLCKMLQAGKPSASTSPIILPYNPQT 215
+Y P P+P P PP P P C+ PS +P P +P
Sbjct: 340 VYSPPPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPCEEHSPPPPSPHPAPYHPPPSPSP 519
Query: 216 SEPIVSETQAQEIPNPEKSNSEPQPSDHSNEEP 248
P V Q P S P P H N P
Sbjct: 520 PPPPV-----QYNSPPPPSPPPPTPVYHYNSPP 603
Score = 27.7 bits (60), Expect = 8.8
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 302 PNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPPRSPLP 340
P YS P P P P V P PPPP P P
Sbjct: 40 PPVYSPPPPPPSPPPPSPTYCVRSPPPPSPPPPSPPPPP 156
Score = 27.7 bits (60), Expect = 8.8
Identities = 19/65 (29%), Positives = 23/65 (35%)
Frame = +1
Query: 302 PNRYSGPRPEPLVDPDFLIQAVPLASMPHPPPPPRSPLPENNASVSNHSSDKSQNPETET 361
P YS P P P P P + PPPPP P E + +P +
Sbjct: 334 PPVYSPPPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPCEEH------------SPPPPS 477
Query: 362 PHQNP 366
PH P
Sbjct: 478 PHPAP 492
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,699,445
Number of Sequences: 63676
Number of extensions: 351894
Number of successful extensions: 7834
Number of sequences better than 10.0: 530
Number of HSP's better than 10.0 without gapping: 4918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6914
length of query: 376
length of database: 12,639,632
effective HSP length: 99
effective length of query: 277
effective length of database: 6,335,708
effective search space: 1754991116
effective search space used: 1754991116
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0101.4