BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.13
(385 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), co... 272 2e-73
TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), co... 269 2e-72
TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete 268 2e-72
TC218896 similar to GB|AAP37763.1|30725482|BT008404 At1g04790 {A... 29 3.1
TC207730 homologue to UP|O22378 (O22378) Metallothionein-II prot... 28 9.1
AW508617 28 9.1
>TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), complete
Length = 2043
Score = 272 bits (695), Expect = 2e-73
Identities = 133/255 (52%), Positives = 185/255 (72%)
Frame = +1
Query: 6 KKQKVSRIDLETESDVEGDVRDITASEKKMFSGKRIPSDVPNVPLDNVSIHAPENAFKWK 65
K++++S D ++ DVE D++ S+K SGK++P +VP+ PLDN+S H+ N KWK
Sbjct: 868 KRKEISSSD--SDKDVE---LDVSTSKKAKTSGKKVPGNVPDAPLDNISFHSIGNVEKWK 1032
Query: 66 YVYQRRVAKDREIDSDVLACKEIIALIAKAGLRKTVMNIGKCYDKLVKEFIVNLSEDVNN 125
YVYQRR+A +RE+ D L CKEI+ LI AGL KTV +G CY+ LV+EFIVN+ D++N
Sbjct: 1033 YVYQRRLAVERELGRDALDCKEIMDLIKAAGLLKTVSKLGDCYEGLVREFIVNIPSDISN 1212
Query: 126 STSPEFRKVFVRGKCVNFSPAIINQTLERSVVEFVEEELSLDTVAEELTAGRVKKWPAKK 185
S E++KVFVRGKCV FSPA+IN+ L R ++ ++S +A+E+TA RV+ WP K
Sbjct: 1213 RKSDEYQKVFVRGKCVKFSPAVINKYLGRPTDGVIDIDVSEHQIAKEITAKRVQHWPKKG 1392
Query: 186 LLSTGVLSVKYAILNRIGVVNWVPSNHTSVVSAMLAKLIYRIGTEIAYDFGNFVFSQTLK 245
LS G LSVKYAIL+RIG NWVP+NHTS V+ L K +Y +GT+ ++FGN++F QT+K
Sbjct: 1393 KLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVK 1572
Query: 246 HAETCAVKLPISFFT 260
H+E+ A+KLPI+F T
Sbjct: 1573 HSESFAIKLPIAFPT 1617
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/36 (41%), Positives = 17/36 (46%), Gaps = 5/36 (13%)
Frame = +3
Query: 307 DIC-----SCLYVCLRNSQCHC*T*GHFQGTSRDHQ 337
DIC SC + C C*T GH QG +HQ
Sbjct: 1749 DICLDIRESCCFRCCVQGCSDC*TQGHMQGAGSNHQ 1856
>TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), complete
Length = 2128
Score = 269 bits (687), Expect = 2e-72
Identities = 133/255 (52%), Positives = 184/255 (72%)
Frame = +1
Query: 6 KKQKVSRIDLETESDVEGDVRDITASEKKMFSGKRIPSDVPNVPLDNVSIHAPENAFKWK 65
K++++S D ++ DVE DV DI ++ SGK++P +VP+ PLDN+S H+ +N +WK
Sbjct: 892 KRKEISSSD--SDDDVELDVPDIKRAKT---SGKKVPGNVPDAPLDNISFHSIDNVERWK 1056
Query: 66 YVYQRRVAKDREIDSDVLACKEIIALIAKAGLRKTVMNIGKCYDKLVKEFIVNLSEDVNN 125
+VYQRR+A +RE+ D L CKEI+ LI AGL KTV +G CY+ LV+EFIVN+ D+ N
Sbjct: 1057 FVYQRRLALERELGRDALDCKEIMDLIKAAGLLKTVTKLGDCYESLVREFIVNIPSDITN 1236
Query: 126 STSPEFRKVFVRGKCVNFSPAIINQTLERSVVEFVEEELSLDTVAEELTAGRVKKWPAKK 185
S E++KVFVRGKCV FSPA+IN+ L R V+ +S +A+E+TA +V+ WP K
Sbjct: 1237 RKSDEYQKVFVRGKCVRFSPAVINKYLGRPTDGVVDITVSEHQIAKEITAKQVQHWPKKG 1416
Query: 186 LLSTGVLSVKYAILNRIGVVNWVPSNHTSVVSAMLAKLIYRIGTEIAYDFGNFVFSQTLK 245
LS G LSVKYAIL+RIG NWVP+NHTS V+ L K +Y +GT+ ++FGN++F QT+K
Sbjct: 1417 KLSAGKLSVKYAILHRIGAANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVK 1596
Query: 246 HAETCAVKLPISFFT 260
H+E+ AVKLPI+F T
Sbjct: 1597 HSESFAVKLPIAFPT 1641
Score = 28.1 bits (61), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = +3
Query: 310 SCLYVCLRNSQCHC*T*GHFQGTSRDHQ 337
SC + C C*T GH QG +HQ
Sbjct: 1785 SCCFRCCVQGCLDC*TQGHMQGAGSNHQ 1868
>TC220237 UP|O64406 (O64406) Envelope-like (Fragment), complete
Length = 1974
Score = 268 bits (686), Expect = 2e-72
Identities = 131/245 (53%), Positives = 178/245 (72%)
Frame = +1
Query: 16 ETESDVEGDVRDITASEKKMFSGKRIPSDVPNVPLDNVSIHAPENAFKWKYVYQRRVAKD 75
+++ DVE DV DI ++K SGK++P +VP+ PLDN+S H+ N +WK+VYQRR+A +
Sbjct: 853 DSDDDVELDVPDIKRAKK---SGKKVPGNVPDAPLDNISFHSIGNVERWKFVYQRRLALE 1023
Query: 76 REIDSDVLACKEIIALIAKAGLRKTVMNIGKCYDKLVKEFIVNLSEDVNNSTSPEFRKVF 135
RE+ D L CKEI+ LI AGL KTV +G CY+ LV+EFIVN+ D+ N S E++KVF
Sbjct: 1024 RELGRDALDCKEIMDLIKAAGLLKTVTKLGDCYESLVREFIVNIPSDITNRKSDEYQKVF 1203
Query: 136 VRGKCVNFSPAIINQTLERSVVEFVEEELSLDTVAEELTAGRVKKWPAKKLLSTGVLSVK 195
VRGKCV FSPA+IN+ L R V+ +S +A+E+TA +V+ WP K LS G LSVK
Sbjct: 1204 VRGKCVRFSPAVINKYLGRPTEGVVDIAVSEHQIAKEITAKQVQHWPKKGKLSAGKLSVK 1383
Query: 196 YAILNRIGVVNWVPSNHTSVVSAMLAKLIYRIGTEIAYDFGNFVFSQTLKHAETCAVKLP 255
YAIL+RIG NWVP+NHTS V+ L K +Y +GT+ ++FGN++F QT+KH+E+ AVKLP
Sbjct: 1384 YAILHRIGTANWVPTNHTSTVATGLGKFLYAVGTKSKFNFGNYIFDQTVKHSESFAVKLP 1563
Query: 256 ISFFT 260
I+F T
Sbjct: 1564 IAFPT 1578
Score = 28.9 bits (63), Expect = 4.1
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = +3
Query: 310 SCLYVCLRNSQCHC*T*GHFQGTSRDHQ 337
SC + C C*T GH QG +HQ
Sbjct: 1722 SCCFRCCNQGCFDC*TQGHMQGAGSNHQ 1805
>TC218896 similar to GB|AAP37763.1|30725482|BT008404 At1g04790 {Arabidopsis
thaliana;} , partial (17%)
Length = 1419
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Frame = -1
Query: 65 KYVYQRRVAKDREIDSDVLACKEIIALIAK--AGLRKTVMNIGKCYDKLVK-------EF 115
K+V R+VA +D D+ I + GLR+ + IG+C LV F
Sbjct: 930 KFVQTRKVANSFSLDRDLKTYGTCICEVVSQDGGLRQAIDQIGRCTSMLVISLIKG**HF 751
Query: 116 IVNLSE 121
I+++SE
Sbjct: 750 IISVSE 733
>TC207730 homologue to UP|O22378 (O22378) Metallothionein-II protein,
complete
Length = 541
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 309 CSCLYVCLRNSQCHC*T*GHFQGTSRDHQDCCC*ETKG--GCSHPNS 353
C C C S C C + G G DH C C E G CS P +
Sbjct: 99 CGCTVPCTGGSTCRCTSVGMTTG-GGDHVTCSCGEHCGCNPCSCPKT 236
>AW508617
Length = 439
Score = 27.7 bits (60), Expect = 9.1
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 309 CSCLYVCLRNSQCHC*T*GHFQGTSRDHQDCCC*ETKG--GCSHPNS 353
C C C S C C + G G DH C C E G CS P +
Sbjct: 88 CGCTVPCTGGSTCRCTSVGMTTG-GGDHVTCSCGEYCGCNPCSCPKT 225
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.147 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,085,656
Number of Sequences: 63676
Number of extensions: 319645
Number of successful extensions: 1944
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1944
length of query: 385
length of database: 12,639,632
effective HSP length: 99
effective length of query: 286
effective length of database: 6,335,708
effective search space: 1812012488
effective search space used: 1812012488
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0101.13