TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0100a.5
         (201 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232285 similar to UP|Y20L_ARATH (O80813) Ycf20-like protein, p...   176  8e-45
BI967742                                                              169  8e-43
AW101304                                                              162  1e-40
BI892699                                                              116  6e-27
TC220086 homologue to UP|Q7XUF0 (Q7XUF0) OJ991113_30.19 protein,...    46  1e-05
BI786980                                                               40  0.001
TC215730 similar to UP|Q9FN50 (Q9FN50) Emb|CAB62636.1 (AT5g23040...    32  0.15
TC232759                                                               30  0.57
TC215112                                                               28  2.8
BM522960                                                               27  6.3
TC226298                                                               27  8.3
BE190607                                                               27  8.3
BI699134                                                               27  8.3

>TC232285 similar to UP|Y20L_ARATH (O80813) Ycf20-like protein, partial (74%)
          Length = 472

 Score =  176 bits (445), Expect = 8e-45
 Identities = 84/96 (87%), Positives = 93/96 (96%)
 Frame = +3

Query: 106 LDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRK 165
           L K+NSARKN+P+K+FL+LLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGML+YRK
Sbjct: 9   LGKVNSARKNIPLKVFLVLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRK 188

Query: 166 PPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKLGS 201
            PT RTGRLQSFL+++NYWKAGICLGLFVDAFKLGS
Sbjct: 189 LPTARTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS 296


>BI967742 
          Length = 492

 Score =  169 bits (428), Expect = 8e-43
 Identities = 81/96 (84%), Positives = 91/96 (94%)
 Frame = -3

Query: 106 LDKLNSARKNVPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLLYRK 165
           L+KL+ ARKN+P+K+FLLLLG YTANALATILGQTGDWDVLVAGVVVAAIEGIGML+YR 
Sbjct: 490 LEKLSXARKNIPLKVFLLLLGXYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRX 311

Query: 166 PPTVRTGRLQSFLLMLNYWKAGICLGLFVDAFKLGS 201
            PT +TGRLQSFL+++NYWKAGICLGLFVDAFKLGS
Sbjct: 310 XPTEKTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS 203


>AW101304 
          Length = 419

 Score =  162 bits (410), Expect = 1e-40
 Identities = 80/119 (67%), Positives = 97/119 (81%)
 Frame = +3

Query: 3   LQWRLSITEHESSKKPYTAFSASRVHGCCCEPILSGLTSNAGGKSSHFPQSGFLGRKAVW 62
           L+WRLSIT+++SS+    A + SR+H CCCE   + LT N G KSS F QS FLGR+A W
Sbjct: 66  LKWRLSITDYKSSENSCIALATSRIHCCCCETNFNRLTLN-GTKSSPFSQSCFLGRRAGW 242

Query: 63  KIAFALNTGGVPGNGEQQSLNDTSSSFGGTRLGRILSAGGRQLLDKLNSARKNVPMKIF 121
           KIAFALNTGGV GNG+QQS N+ SS+ GGTRLGRILSAGGRQLL+KLN+ARKN+P+K+F
Sbjct: 243 KIAFALNTGGVSGNGDQQSFNEASSNLGGTRLGRILSAGGRQLLEKLNAARKNIPLKVF 419


>BI892699 
          Length = 421

 Score =  116 bits (291), Expect = 6e-27
 Identities = 57/87 (65%), Positives = 65/87 (74%)
 Frame = +3

Query: 1   MNLQWRLSITEHESSKKPYTAFSASRVHGCCCEPILSGLTSNAGGKSSHFPQSGFLGRKA 60
           M L WRLSITE+ESS+K     + SR+H CCCEP  +GLT  A  KSS F QS FLGR+A
Sbjct: 159 MTLNWRLSITENESSEKSCVNLATSRIHSCCCEPNFNGLTLKACMKSSPFAQSCFLGRRA 338

Query: 61  VWKIAFALNTGGVPGNGEQQSLNDTSS 87
            WKIAFALNTGGV GNG+QQS N+ SS
Sbjct: 339 GWKIAFALNTGGVSGNGDQQSFNEASS 419


>TC220086 homologue to UP|Q7XUF0 (Q7XUF0) OJ991113_30.19 protein, partial
           (73%)
          Length = 793

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
 Frame = +1

Query: 86  SSSFGGTRLGRILSAGG-RQLLDKL--------NSARKNVPMKIF---LLLLGFYTANAL 133
           S S  G R+  +   GG R+L+D +        N  R      +F    LL GFY A  +
Sbjct: 121 SRSSAGLRIRAVQENGGPRRLVDIIRLVPEFSRNYFRSPSRRALFGGISLLGGFYVAQTI 300

Query: 134 ATILGQTGDWDVLVAGVVVAAIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGICLGLF 193
           +   G  G  DV+ A + V   E +    Y +P      ++   + +LN +K G   GLF
Sbjct: 301 SLSFGALGVNDVIAAVLCVLLTEYVTKFYYSRP------KVTFPVALLNNFKMGFTYGLF 462

Query: 194 VDAFKLGS 201
           +DAFKL S
Sbjct: 463 IDAFKLAS 486


>BI786980 
          Length = 421

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 167 PTVRTGRLQSFLLMLNYWKAGICLGLFVDAFK 198
           P VR  R  S + + NYWKAG+ LGLF+D+FK
Sbjct: 12  PLVRKSR--SLISLFNYWKAGLTLGLFLDSFK 101


>TC215730 similar to UP|Q9FN50 (Q9FN50) Emb|CAB62636.1 (AT5g23040/MYJ24_3),
           partial (82%)
          Length = 1255

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = -2

Query: 71  GGVPGNGEQQSLNDTSSSFGGTRLG 95
           GGV G  E+Q  N TSSSFG TR G
Sbjct: 171 GGVDGKFEKQRENRTSSSFGSTRQG 97


>TC232759 
          Length = 444

 Score = 30.4 bits (67), Expect = 0.57
 Identities = 13/17 (76%), Positives = 15/17 (87%)
 Frame = +1

Query: 1   MNLQWRLSITEHESSKK 17
           M L WRLSITE+ESS+K
Sbjct: 373 MTLNWRLSITENESSEK 423


>TC215112 
          Length = 1736

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 5/52 (9%)
 Frame = -1

Query: 13  ESSKKPYTAFSASR-----VHGCCCEPILSGLTSNAGGKSSHFPQSGFLGRK 59
           +  KK    F   R     ++G    P   G+  N GGK +  PQ  FLG+K
Sbjct: 179 KKKKKKKKLFGGXRRPKFPLYGGFFPPPFWGVLKNGGGKKNRGPQKIFLGKK 24


>BM522960 
          Length = 438

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
 Frame = +2

Query: 143 WDVLVAG-----VVVAAIEGIGMLLYRKPPTVRTGRLQSFLLMLNYWKAGIC 189
           WD+ + G     V+   ++ IG  L R+  +    + Q   L L++WK G C
Sbjct: 131 WDLCILGWTSK*VLKRIVQRIGRKLNRRKQS*LRLKFQILHLQLDFWKHGSC 286


>TC226298 
          Length = 1072

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 10/30 (33%), Positives = 21/30 (69%)
 Frame = +2

Query: 108 KLNSARKNVPMKIFLLLLGFYTANALATIL 137
           +L+  R N+ +++FLL+  F+T ++L  +L
Sbjct: 857 RLSCCRNNINIQVFLLVHVFFTVSSLCPLL 946


>BE190607 
          Length = 445

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 17/44 (38%), Positives = 20/44 (44%)
 Frame = +1

Query: 54  GFLGRKAVWKIAFALNTGGVPGNGEQQSLNDTSSSFGGTRLGRI 97
           GF+G       AF L  GG PG        +T  +FGG   GRI
Sbjct: 253 GFIGH------AFGLFVGGFPGANIFGGRRNTPGNFGGFLGGRI 366


>BI699134 
          Length = 411

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 121 FLLLLGFYTANALATILGQTGDWDVLV 147
           FL  L FYTAN    IL +T DW+V +
Sbjct: 152 FLSGLFFYTANG*NWIL*KTWDWEVRI 232


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,020,117
Number of Sequences: 63676
Number of extensions: 134781
Number of successful extensions: 664
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of query: 201
length of database: 12,639,632
effective HSP length: 92
effective length of query: 109
effective length of database: 6,781,440
effective search space: 739176960
effective search space used: 739176960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)