TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0100a.14
         (90 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204975                                                              151  6e-38
BF423822                                                              119  2e-28
AW351179                                                               30  0.16
TC217948 similar to UP|Q8LDQ9 (Q8LDQ9) VirE2-interacting protein...    27  2.3
TC234748 similar to UP|O49220 (O49220) Shoot-forming PKSF1, part...    27  2.3
TC217640 similar to UP|Q9FHR8 (Q9FHR8) Enoyl CoA hydratase-like ...    25  5.0
BG652678                                                               25  5.0
BU549510                                                               25  6.6
TC207010 similar to GB|AAP49840.1|31415731|AY227250 SAC domain p...    25  6.6

>TC204975 
          Length = 655

 Score =  151 bits (381), Expect = 6e-38
 Identities = 74/88 (84%), Positives = 80/88 (90%)
 Frame = +3

Query: 1   MNVEEEVQRLKEEITRLGSVQTDGSYKVTFGTLFHDDRCANIFEALVGTLRAAKKRKIVA 60
           MNVEEEVQRL +EI RLG VQ DGSYKVTFGTLF+DD CANIFEALVGTLRAAKKRK++ 
Sbjct: 105 MNVEEEVQRLSQEIKRLGKVQADGSYKVTFGTLFNDDECANIFEALVGTLRAAKKRKVLT 284

Query: 61  YDGELLLQGVHDNVEITLNPSPAAPAAA 88
           Y+GELLLQGVHDNVEITLNP+PA  AAA
Sbjct: 285 YEGELLLQGVHDNVEITLNPAPAEAAAA 368


>BF423822 
          Length = 292

 Score =  119 bits (299), Expect = 2e-28
 Identities = 62/88 (70%), Positives = 69/88 (77%)
 Frame = +2

Query: 1   MNVEEEVQRLKEEITRLGSVQTDGSYKVTFGTLFHDDRCANIFEALVGTLRAAKKRKIVA 60
           MNV E+VQRL + I RLG V T GSY VT GTLF+ D C NIFEALVGTLRAAKKR ++ 
Sbjct: 23  MNV*EQVQRLSQ*IKRLGKVHTHGSYNVTIGTLFNYD*CTNIFEALVGTLRAAKKR*VLT 202

Query: 61  YDGELLLQGVHDNVEITLNPSPAAPAAA 88
           Y G+LLLQG HDNVEITLNP+PA  A A
Sbjct: 203 YYGDLLLQGFHDNVEITLNPAPAEAATA 286


>AW351179 
          Length = 215

 Score = 30.4 bits (67), Expect = 0.16
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -3

Query: 46  LVGTLRAAKKRKIVAYDG 63
           L+ TLRAAKKRK++ YDG
Sbjct: 204 LLVTLRAAKKRKVLTYDG 151


>TC217948 similar to UP|Q8LDQ9 (Q8LDQ9) VirE2-interacting protein VIP1,
           partial (43%)
          Length = 1386

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 3   VEEEVQRLKEEITRLGSVQTDGSYKVTFGTL 33
           ++EE+QRL+ + TRLG++  + S+   F  L
Sbjct: 935 LKEELQRLRAQSTRLGAIGGNPSFGGIFNQL 1027


>TC234748 similar to UP|O49220 (O49220) Shoot-forming PKSF1, partial (12%)
          Length = 591

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 3   VEEEVQRLKEEITRLGSVQTDGSYKVTFGTL 33
           ++EE+QRL+ + TRLG++  + S+   F  L
Sbjct: 298 LKEELQRLRAQSTRLGAIGGNPSFGGIFNQL 390


>TC217640 similar to UP|Q9FHR8 (Q9FHR8) Enoyl CoA hydratase-like protein,
           partial (83%)
          Length = 1203

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 21/67 (31%), Positives = 27/67 (39%), Gaps = 9/67 (13%)
 Frame = -3

Query: 25  SYKVTFGTLFHDDR----CANIFEALVGTLRAAKKRKIVAYDGELLLQ-----GVHDNVE 75
           S  V F +  H       C N   AL+ T RA KK   V+     LLQ      +  N  
Sbjct: 913 SITVVFNSKIHTTTYLVTCNNQMHALLQTFRAWKKLAFVSASVPSLLQLSQGIAIWQNSR 734

Query: 76  ITLNPSP 82
           +  NP+P
Sbjct: 733 LQHNPTP 713


>BG652678 
          Length = 415

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 27 KVTFGTLFHDDR--CANIFEALVGTLRAAKKRKIVAYDGELLLQGVHDNV 74
          KV+ GTLFH +R  C ++F +  G   A      +  DG + L G  + V
Sbjct: 33 KVSVGTLFHGERILCDHVFASDSGKRIAESCFAEITKDGAVSLFGFPEMV 182


>BU549510 
          Length = 298

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 53  AKKRKIVAYDGELLLQGVHDNVEITLNP 80
           AK++K+V  + +LLLQ +  ++ + LNP
Sbjct: 291 AKRQKLVLLNQDLLLQTILFSIHL*LNP 208


>TC207010 similar to GB|AAP49840.1|31415731|AY227250 SAC domain protein 7
           {Arabidopsis thaliana;} , partial (36%)
          Length = 975

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (61%)
 Frame = +1

Query: 5   EEVQRLKEEITRLGSVQTDGSYKVTFGTLFHD 36
           +E+  LKE ++ LG+ Q  G YK+    LF+D
Sbjct: 244 QELLLLKETLSDLGTAQFKGYYKMVL-MLFYD 336


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,862,827
Number of Sequences: 63676
Number of extensions: 27017
Number of successful extensions: 116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of query: 90
length of database: 12,639,632
effective HSP length: 66
effective length of query: 24
effective length of database: 8,437,016
effective search space: 202488384
effective search space used: 202488384
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)