BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098c.1
(78 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204588 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosida... 87 2e-18
TC208756 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosida... 63 2e-11
TC212850 weakly similar to UP|Q76LU3 (Q76LU3) Alpha-L-arabinofur... 50 2e-07
TC231276 weakly similar to GB|BAC56038.1|28071350|AP005103 5-alp... 27 1.9
TC219334 weakly similar to UP|Q9FUZ9 (Q9FUZ9) SKP1 interacting p... 27 1.9
TC209244 weakly similar to UP|Q93ZA8 (Q93ZA8) AT4g17250/dl4660w,... 25 5.5
TC231829 25 5.5
TC231975 similar to PIR|T00986|T00986 yeast pheromone receptor-l... 25 5.5
TC225911 similar to GB|AAP13365.1|30023664|BT006257 At1g75270 {A... 25 9.4
>TC204588 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
(84%)
Length = 2003
Score = 87.0 bits (214), Expect = 2e-18
Identities = 43/79 (54%), Positives = 61/79 (76%), Gaps = 1/79 (1%)
Frame = +2
Query: 1 VVNFGSGSESFRISINGLK-SKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGA 59
VVNFG+ + + +IS++GL+ + ++ SGS KTVLT+ANVMDENSFS+P K+VP Q+ ++
Sbjct: 1547 VVNFGTTAVNLKISLDGLEPNSLQLSGSTKTVLTSANVMDENSFSQPKKVVPIQSLLQNV 1726
Query: 60 STDMKVELPPHSVTSFDLL 78
DM V +PP S TSFDL+
Sbjct: 1727 GKDMNVTVPPRSFTSFDLV 1783
>TC208756 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase,
partial (5%)
Length = 544
Score = 63.2 bits (152), Expect = 2e-11
Identities = 33/59 (55%), Positives = 40/59 (66%)
Frame = +1
Query: 20 SKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVELPPHSVTSFDLL 78
S V+Q GS TVLT+ NVMDENSF EP K+VPQ +P+E + V LP +SV S D L
Sbjct: 4 SNVQQYGSTITVLTSTNVMDENSFLEPKKVVPQTSPLEIDDKHLIVLLPSYSVISLDFL 180
>TC212850 weakly similar to UP|Q76LU3 (Q76LU3) Alpha-L-arabinofuranosidase,
partial (3%)
Length = 558
Score = 50.1 bits (118), Expect = 2e-07
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 35/109 (32%)
Frame = +2
Query: 5 GSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEP------------------ 46
GS +F+IS+NG +S + + KTVLT+ N +DENS + P
Sbjct: 11 GSNQINFKISLNGFESS-NATKATKTVLTSKNALDENSLANPTNVHITSFILFLLL*TNN 187
Query: 47 -----------------NKIVPQQTPIEGASTDMKVELPPHSVTSFDLL 78
+IVP+++P++ A+ ++ LPP S+T FDLL
Sbjct: 188 TYNN*LS*HLMFICLFCTQIVPKRSPLQSANNEINDILPPVSLTVFDLL 334
>TC231276 weakly similar to GB|BAC56038.1|28071350|AP005103
5-alpha-taxadienol-10-beta-hydroxylase-like protein
{Oryza sativa (japonica cultivar-group);} , partial
(28%)
Length = 646
Score = 26.9 bits (58), Expect = 1.9
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +1
Query: 32 LTAANVMDENSFSEPNKIVPQQ 53
+TA MDEN F EP+KI P +
Sbjct: 280 VTAMTHMDENIFPEPSKIDPSR 345
>TC219334 weakly similar to UP|Q9FUZ9 (Q9FUZ9) SKP1 interacting partner 6
(Fragment), partial (29%)
Length = 1451
Score = 26.9 bits (58), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 6 SGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQ 52
SGS S + L V G+R+TV + + EPNK+ PQ
Sbjct: 1151 SGSNSM**NQRMLTCNVWSQGNRRTVDNGRAFGNRKNLPEPNKLTPQ 1011
>TC209244 weakly similar to UP|Q93ZA8 (Q93ZA8) AT4g17250/dl4660w, partial
(18%)
Length = 1186
Score = 25.4 bits (54), Expect = 5.5
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = -1
Query: 2 VNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAST 61
+NF S SFR+ IN + GS T+L + + ++ + + + ST
Sbjct: 310 MNFTKWSPSFRVLINFFTESLLMFGSATTMLASVTKGSDQLYAASRRCKERTWSLSNVST 131
Query: 62 DM 63
+
Sbjct: 130 PL 125
>TC231829
Length = 568
Score = 25.4 bits (54), Expect = 5.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 20 SKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVELPPHSV 72
S + + S K V V+ + S SE +VP + E A LPP SV
Sbjct: 190 SDLPDTASLKAVDVCDAVLPDKSPSEGEALVPPRCAGETAEKSKVAGLPPRSV 348
>TC231975 similar to PIR|T00986|T00986 yeast pheromone receptor-like protein
AR781 [imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (22%)
Length = 799
Score = 25.4 bits (54), Expect = 5.5
Identities = 11/35 (31%), Positives = 20/35 (56%)
Frame = -2
Query: 37 VMDENSFSEPNKIVPQQTPIEGASTDMKVELPPHS 71
V+ +N P +I+ + + + GAS + K+ PP S
Sbjct: 786 VLRQNRVFSPQRILVRCSSLRGASEEEKIPEPPFS 682
>TC225911 similar to GB|AAP13365.1|30023664|BT006257 At1g75270 {Arabidopsis
thaliana;} , partial (74%)
Length = 657
Score = 24.6 bits (52), Expect = 9.4
Identities = 11/35 (31%), Positives = 21/35 (59%)
Frame = +2
Query: 7 GSESFRISINGLKSKVKQSGSRKTVLTAANVMDEN 41
GS+ F ++ LKSK G+ +T++ + +DE+
Sbjct: 359 GSKIFGSFVSFLKSKDTNDGTEQTLVAELSALDEH 463
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.308 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,465,373
Number of Sequences: 63676
Number of extensions: 19416
Number of successful extensions: 96
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 78
length of database: 12,639,632
effective HSP length: 54
effective length of query: 24
effective length of database: 9,201,128
effective search space: 220827072
effective search space used: 220827072
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0098c.1