BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098b.3
(287 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 37 0.010
BF595364 35 0.051
BG363504 similar to PIR|T07622|T076 extensin homolog - soybean (... 35 0.051
TC219622 similar to UP|Q6I664 (Q6I664) HD-ZIP protein (Fragment)... 33 0.19
TC231500 similar to UP|Q7S6R3 (Q7S6R3) Predicted protein, partia... 33 0.19
TC216624 similar to UP|Q6YZ10 (Q6YZ10) 27k vesicle-associated me... 32 0.33
TC227385 similar to UP|Q6NNK6 (Q6NNK6) At3g04040, partial (72%) 32 0.43
CA851573 32 0.43
TC220830 similar to UP|Q6PQQ5 (Q6PQQ5) AP2/EREBP transcription f... 32 0.43
BU089970 similar to PIR|T48619|T486 tRNA synthase-like protein -... 32 0.43
TC216633 weakly similar to UP|Q6ZQ33 (Q6ZQ33) MKIAA0857 protein ... 32 0.43
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 29 0.46
TC221032 similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall p... 31 0.57
TC221582 similar to UP|Q93YZ7 (Q93YZ7) At2g31810/F20M17.15, part... 31 0.57
TC211959 homologue to PIR|E86488|E86488 protein T32E20.35 [impor... 31 0.57
TC206298 similar to GB|AAC19270.1|3193286|T14P8 coded for by A. ... 31 0.74
TC206504 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragme... 31 0.74
TC219068 similar to UP|O81138 (O81138) AP2 domain family transcr... 31 0.74
TC210212 weakly similar to UP|Q9P2S7 (Q9P2S7) Cisplatin resistan... 31 0.74
TC222801 weakly similar to UP|O23370 (O23370) Cell wall protein ... 25 0.78
>TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (47%)
Length = 944
Score = 37.0 bits (84), Expect = 0.010
Identities = 28/108 (25%), Positives = 45/108 (40%)
Frame = +3
Query: 89 IHLLEALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVV 148
+ L +++ H L +L+ PTI + L H P PP TI +++
Sbjct: 420 LQLPTTISLHHHLLHLLHHPTITSL-----------------LHHHLPHPPHLTITRLLL 548
Query: 149 VAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNIAPRKHVT 196
+ + ++IT+ H H H PL L IT + H + P H T
Sbjct: 549 HHLPHLHL------LIITSLHHHLHHPLHHLTITRLRHHLLLPLHHPT 674
>BF595364
Length = 418
Score = 34.7 bits (78), Expect = 0.051
Identities = 24/65 (36%), Positives = 35/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 79 VICESDSTTVIHLL-EALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPP 137
V+ ES+ T ++HLL ++ P P PT +L +S+ S++S S PPPP
Sbjct: 28 VVAESEHTLLLHLLHQSPRSPKPSLRSKTSPT----------SLPTSNPSAIS-SPPPPP 174
Query: 138 PPSFT 142
PPS T
Sbjct: 175 PPSST 189
>BG363504 similar to PIR|T07622|T076 extensin homolog - soybean (fragment),
partial (19%)
Length = 310
Score = 34.7 bits (78), Expect = 0.051
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 121 LLSSSSSSLSLSHPPP--PPPSFTIATIVVVAIATGSIT--ASNSTVVITNTHCHHH 173
LL S+S SLS PPP P P +AT + I T + + +T V TNTH HH
Sbjct: 48 LLPSTSPIPSLSLPPPTLPRPPPLVATTITTDITTLPLPLPVTATTNVATNTHLLHH 218
>TC219622 similar to UP|Q6I664 (Q6I664) HD-ZIP protein (Fragment), partial
(64%)
Length = 1015
Score = 32.7 bits (73), Expect = 0.19
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = +2
Query: 92 LEALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPS 140
L AL + LY +N PT M ++ +SS+SSS S + P PP+
Sbjct: 248 LRALKLSPHLYMQMNPPTTLTMCPSCERVAVSSASSSSSATMPSALPPA 394
>TC231500 similar to UP|Q7S6R3 (Q7S6R3) Predicted protein, partial (3%)
Length = 736
Score = 32.7 bits (73), Expect = 0.19
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 106 NKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVI 165
++PT +D +S S S ++ HP P FT T+V+ +IAT S ++
Sbjct: 2 HQPTTRPSTIYLDLKTISRSPSPVTTQHPVIP---FTAPTVVLSSIATRSSPSARRESTN 172
Query: 166 TNTHCH 171
N CH
Sbjct: 173 PNLGCH 190
>TC216624 similar to UP|Q6YZ10 (Q6YZ10) 27k vesicle-associated membrane
protein-associated protein-like, partial (81%)
Length = 1108
Score = 32.0 bits (71), Expect = 0.33
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +1
Query: 121 LLSSSSSSLSLSHPPPP-----PPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPP 175
L S SSS + PPPP P +FTI I+ + I T I S S V + T PP
Sbjct: 187 LRSGISSSFRSAIPPPPIRRRLPLTFTIFIIITITITTTLIIISPSRVPLP-TPPIPFPP 363
Query: 176 LMPLFITEVTHTNIAPRKHVTSGADKERLVRGTEAGVP 213
L F ++ P TS + R GVP
Sbjct: 364 LRDRFSRHDVVSSSIPPTSFTS-----LMSRANRLGVP 462
>TC227385 similar to UP|Q6NNK6 (Q6NNK6) At3g04040, partial (72%)
Length = 778
Score = 31.6 bits (70), Expect = 0.43
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Frame = +1
Query: 127 SSLSLSHPP--PPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHH 172
SS++ + P PPPPSF + + ++ ++ AS + N CHH
Sbjct: 4 SSITTTPSPALPPPPSFLFVLVRLCSMQNSAMEASKLSSSDQNVRCHH 147
>CA851573
Length = 614
Score = 31.6 bits (70), Expect = 0.43
Identities = 15/57 (26%), Positives = 32/57 (55%)
Frame = +1
Query: 39 SFSEWVASFSSFFGGSCSLYVELLAKKHGLLLDINLGYRWVICESDSTTVIHLLEAL 95
S +E ++ FS G + EL + K+G+ L I+L ++ + E D+ +H+++ +
Sbjct: 40 SIAEXLSCFSKRLGYCNVILAELWSLKYGIKLAIDLNTQFSLFEMDAREAVHMIDXI 210
>TC220830 similar to UP|Q6PQQ5 (Q6PQQ5) AP2/EREBP transcription factor,
partial (10%)
Length = 759
Score = 31.6 bits (70), Expect = 0.43
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Frame = +1
Query: 126 SSSLSLSHPPPPPP---SFTIATIVVVAIATGSITASNSTVVITNTHCHHH 173
SSS S+ H PPPPP F + V+ + +S++ H HHH
Sbjct: 400 SSSQSVGHVPPPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHIYDHHHHH 552
>BU089970 similar to PIR|T48619|T486 tRNA synthase-like protein - Arabidopsis
thaliana, partial (11%)
Length = 418
Score = 31.6 bits (70), Expect = 0.43
Identities = 29/88 (32%), Positives = 40/88 (44%)
Frame = +1
Query: 114 ASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHH 173
+S VD A L S S PP PP T S T S+STV++T T HH
Sbjct: 58 SSSVDNAFLLLSPSLRVQDSSPPLPPH------------TLSNTNSSSTVLLTPTLPDHH 201
Query: 174 PPLMPLFITEVTHTNIAPRKHVTSGADK 201
L+ L +T + + PR T+ A++
Sbjct: 202 --LLDL-LTSLEPDSTRPRGSTTTNAER 276
>TC216633 weakly similar to UP|Q6ZQ33 (Q6ZQ33) MKIAA0857 protein (Fragment),
partial (3%)
Length = 1119
Score = 31.6 bits (70), Expect = 0.43
Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 6/59 (10%)
Frame = +3
Query: 123 SSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTV------VITNTHCHHHPP 175
S+SSS+L L PPPP F T +I T S + S T+T HPP
Sbjct: 339 SASSSTLPLRSIPPPPTPFPTPTSTSTSIPTSSAAPNTSPPSSPTGGSATSTRRSTHPP 515
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 28.9 bits (63), Expect(2) = 0.46
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 106 NKPTINDMASQVDKALLSSSSSSLSLSHPPPPP 138
+ P+ + +S +L SSSSSS S S PPPP
Sbjct: 508 SSPSSSSSSSPSSSSLSSSSSSSPSSSSLPPPP 410
Score = 21.2 bits (43), Expect(2) = 0.46
Identities = 5/7 (71%), Positives = 7/7 (99%)
Frame = -2
Query: 167 NTHCHHH 173
++HCHHH
Sbjct: 315 HSHCHHH 295
>TC221032 similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1
precursor (Hydroxyproline-rich glycoprotein 1), partial
(6%)
Length = 503
Score = 31.2 bits (69), Expect = 0.57
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 99 HPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITA 158
H L + N S L S SSS PPPPPS + + +VA S+T
Sbjct: 1 HQLISLYQTKRHNKTLSLKPSLCLPSFSSSPPPMASPPPPPSLLLLFLTLVAATASSLTC 180
Query: 159 S 159
+
Sbjct: 181 T 183
>TC221582 similar to UP|Q93YZ7 (Q93YZ7) At2g31810/F20M17.15, partial (19%)
Length = 505
Score = 31.2 bits (69), Expect = 0.57
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 100 PLYDVLNKPTINDMASQVDKALLSSSS--SSLSLSHPPPPPP 139
P VL P ++ + +++ LS S+ +SLS S PPPPPP
Sbjct: 61 PSNSVLPIPNLSSLPNRLPSPHLSPSAPINSLSSSPPPPPPP 186
>TC211959 homologue to PIR|E86488|E86488 protein T32E20.35 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(19%)
Length = 894
Score = 31.2 bits (69), Expect = 0.57
Identities = 32/111 (28%), Positives = 45/111 (39%), Gaps = 16/111 (14%)
Frame = +1
Query: 46 SFSSFFGGSCSLYVELLAKKHGLLLD---INLGYRWVICESDSTTVIHLLEAL--AMPHP 100
SF+ S +V+ L K L LD + L +C +S + E A HP
Sbjct: 73 SFTIRKAHSFQCFVQGLPSKR*LFLDSETLLLLLATTLCPQESVVWVRSRETTK*AAFHP 252
Query: 101 LYDVLNKPTINDMASQVDKALLSSSSSSLSLS-----------HPPPPPPS 140
L D L++P + LLS++ SS + S P PPPPS
Sbjct: 253 LIDSLSQPKPTTPTETLPPPLLSNTPSSKNSSLARTLLLAPQKPPQPPPPS 405
>TC206298 similar to GB|AAC19270.1|3193286|T14P8 coded for by A. thaliana
cDNA H76583 {Arabidopsis thaliana;} , partial (57%)
Length = 1267
Score = 30.8 bits (68), Expect = 0.74
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
Frame = +2
Query: 123 SSSSSSLSLSHPPPPP---------PSFTIATIVVVAIATGSITASNST----------V 163
++ S S S PPPPP PS A+ + +T I+ASN+T +
Sbjct: 227 NAPSPSPKTSSPPPPPTPLSPSTNSPSAAPASATPASCSTPPISASNATSAPATSTSSPM 406
Query: 164 VITNTHCHHH 173
++ T HHH
Sbjct: 407 ILLRTPLHHH 436
>TC206504 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(73%)
Length = 1050
Score = 30.8 bits (68), Expect = 0.74
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 106 NKPTINDMASQVDKALLSSSS--SSLSLSHPPPPPPSFTIATIVVVAI 151
+KP++ AS+ ++ + S + SS+ LS PPP PS I + +V +
Sbjct: 301 SKPSVRSTASRATRSSMLSETTISSVVLSTIPPPAPSILIELLCIVNV 444
>TC219068 similar to UP|O81138 (O81138) AP2 domain family transcription
factor homolog (AP2 domain transcription factor)
(ABI4:abscisic acid-insensitive 4 ) (ABI4), partial
(25%)
Length = 1064
Score = 30.8 bits (68), Expect = 0.74
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SLSLSHPPPPPPSFTIATIVVVAI 151
S+ S PPPPPP T+ TIV + +
Sbjct: 260 SIFPSTPPPPPPCLTLITIVTITL 331
>TC210212 weakly similar to UP|Q9P2S7 (Q9P2S7) Cisplatin
resistance-associated overexpressed protein, partial
(5%)
Length = 809
Score = 30.8 bits (68), Expect = 0.74
Identities = 16/48 (33%), Positives = 27/48 (55%)
Frame = -3
Query: 93 EALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPPS 140
E++A PHPL + +++++ +S LSL+ PPPPPP+
Sbjct: 399 ESMAAPHPL-----PLPLPSLSTKLVCCCCWNSKCCLSLTPPPPPPPN 271
>TC222801 weakly similar to UP|O23370 (O23370) Cell wall protein like,
partial (18%)
Length = 562
Score = 25.4 bits (54), Expect(2) = 0.78
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 171 HHHPPLMPLFITEVTH 186
HHHPPL L ++TH
Sbjct: 82 HHHPPLSSLHHHQLTH 129
Score = 23.9 bits (50), Expect(2) = 0.78
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = +3
Query: 121 LLSSSSSSLSLSHPPPPPP 139
+LS + S S PPPPPP
Sbjct: 15 ILSPPPPTNSSSPPPPPPP 71
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,710,894
Number of Sequences: 63676
Number of extensions: 308943
Number of successful extensions: 6883
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 4581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5900
length of query: 287
length of database: 12,639,632
effective HSP length: 96
effective length of query: 191
effective length of database: 6,526,736
effective search space: 1246606576
effective search space used: 1246606576
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0098b.3