TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0096b.3
         (223 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC226935 similar to UP|Q9LNV5 (Q9LNV5) F22G5.30, partial (11%)         31  0.51
BF324951 similar to GP|28416657|gb| At5g60800 {Arabidopsis thali...    30  0.87
BE346256 similar to SP|Q41387|PSBW_ Photosystem II reaction cent...    29  1.9
AW309517                                                               28  4.3
BU964425 homologue to GP|3287679|gb T22J18.6 {Arabidopsis thalia...    28  4.3
TC227337 similar to UP|Q9LP69 (Q9LP69) T1N15.17, partial (37%)         28  4.3
TC227335 similar to UP|Q9LP69 (Q9LP69) T1N15.17, partial (16%)         28  4.3
TC230206 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A...    27  5.6
TC206265 weakly similar to UP|PLB2_YEAST (Q03674) Lysophospholip...    27  5.6
BU964732                                                               27  7.4
TC221747 weakly similar to UP|Q8L6T7 (Q8L6T7) Ring-H2 zinc finge...    27  7.4
TC227999                                                               27  7.4
TC213121                                                               27  7.4
TC227229 similar to UP|Q712P1 (Q712P1) BZIP protein BZ3, partial...    27  9.6
TC226021 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana geno...    27  9.6
TC228324 UP|LGUL_SOYBN (P46417) Lactoylglutathione lyase  (Methy...    27  9.6
TC217743 similar to UP|Q8L751 (Q8L751) AT4g08180/T12G13_20, part...    27  9.6

>TC226935 similar to UP|Q9LNV5 (Q9LNV5) F22G5.30, partial (11%)
          Length = 584

 Score = 30.8 bits (68), Expect = 0.51
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 166 PINPHPIHILEFLGSIIIHLLMCYSLLLSNSSHI 199
           PI    +H+   + SII+H+++C+   L NS+H+
Sbjct: 295 PIQ*CHLHLANIIISIILHMVICHQFPLINSTHL 396


>BF324951 similar to GP|28416657|gb| At5g60800 {Arabidopsis thaliana},
           partial (21%)
          Length = 316

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 4/57 (7%)
 Frame = -2

Query: 142 VFCIGFIIKTFYQPPPPNDYSCKEPINPHPIHI----LEFLGSIIIHLLMCYSLLLS 194
           + CI   I +F  PPPP  +   +P +P P  +    L F G      L+ +S+  S
Sbjct: 276 ILCIPCSIFSFLSPPPPLLFFLPDPFSPPPPSLLSPSLSFWGGTTSTFLLSFSMRFS 106


>BE346256 similar to SP|Q41387|PSBW_ Photosystem II reaction center W protein
            chloroplast precursor (PSII 6.1 kDa protein).
           [Spinach], partial (53%)
          Length = 403

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 51  RGMLSPHIHHRMQDVGALVELDPGTPVPEVLALDS--SLILPD 91
           R  +SP   +R+   G L+    G+PVP+V++L S  ++I PD
Sbjct: 348 RAQMSPKTRNRIHPRGLLIS-PKGSPVPQVISLSSTKAMIEPD 223


>AW309517 
          Length = 453

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 192 LLSNSSHIVMFSKLTSLEKGKSEVIGESQRR 222
           LLS+   ++  + L S EKG ++V+G+ +RR
Sbjct: 253 LLSSD*KLITMATLNSTEKGPAKVVGQVKRR 345


>BU964425 homologue to GP|3287679|gb T22J18.6 {Arabidopsis thaliana}, partial
           (9%)
          Length = 313

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 22/74 (29%), Positives = 33/74 (43%)
 Frame = -2

Query: 8   GHEEPILEVLVRMARVVSLVVVDDVVYHLQLLSGNTNGLSIQTRGMLSPHIHHRMQDVGA 67
           GH EP++ VL++         V +VV+ L   S   N   I    +L P I  R      
Sbjct: 309 GHPEPMMGVLLK---------VQEVVFELH*ESQWHNICEINVHMVLEPVIQQRDAHPKL 157

Query: 68  LVELDPGTPVPEVL 81
           L+E + G P  ++L
Sbjct: 156 LLEEEVGVPGQQLL 115


>TC227337 similar to UP|Q9LP69 (Q9LP69) T1N15.17, partial (37%)
          Length = 965

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 192 LLSNSSHIVMFSKLTSLEKGKSEVIGESQRR 222
           LLS+   ++  + L S EKG ++V+G+ +RR
Sbjct: 705 LLSSD*KLITMATLNSTEKGPAKVVGQVKRR 613


>TC227335 similar to UP|Q9LP69 (Q9LP69) T1N15.17, partial (16%)
          Length = 713

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 192 LLSNSSHIVMFSKLTSLEKGKSEVIGESQRR 222
           LLS+   ++  + L S EKG ++V+G+ +RR
Sbjct: 179 LLSSD*KLITMATLNSTEKGPAKVVGQVKRR 87


>TC230206 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
           thaliana;} , partial (28%)
          Length = 1305

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 156 PPPNDYSCKEPINPHPIHILEFLGSIIIHLLM--CYSLLLSNSSHIVMFSKL 205
           PP  DYS   PI   P+H+L  L  I +  L+   +S + S S H++M + +
Sbjct: 463 PPACDYSSFPPILFLPLHLLLLLHPIRLSNLITSIFSSVSSLSHHLLMSNSM 618


>TC206265 weakly similar to UP|PLB2_YEAST (Q03674) Lysophospholipase 2
           precursor  (Phospholipase B 2) , partial (3%)
          Length = 742

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
 Frame = +2

Query: 163 CKEPINPHPIHI--LEFLGSIIIHLLMCYSL 191
           C +  +  P+ I  L F+G +IIH  +CY L
Sbjct: 560 CSQVSSQQPVEICMLHFMGIVIIHKSLCYIL 652


>BU964732 
          Length = 451

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 152 FYQPPPPNDYSCKEPINPHPIHILEFLGSIIIHL 185
           +  PPPP++  C   I   PI  L F G I+I +
Sbjct: 333 YLPPPPPHNTQCFSCIVKCPIFNLCFTGEILIFI 434


>TC221747 weakly similar to UP|Q8L6T7 (Q8L6T7) Ring-H2 zinc finger protein,
           partial (16%)
          Length = 613

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 17/48 (35%), Positives = 24/48 (49%)
 Frame = +3

Query: 151 TFYQPPPPNDYSCKEPINPHPIHILEFLGSIIIHLLMCYSLLLSNSSH 198
           T   PPPP+  S K    P   + L  +G+  I +L  Y+L+L   SH
Sbjct: 57  TISSPPPPSSPSTKSNSMPMLYYGLVVVGTAAI-VLAIYNLVLLRRSH 197


>TC227999 
          Length = 1046

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 12/31 (38%), Positives = 16/31 (50%)
 Frame = -1

Query: 59  HHRMQDVGALVELDPGTPVPEVLALDSSLIL 89
           HH      A+  L P TP+PE L+L    +L
Sbjct: 533 HH*SHPESAIPSLSPATPLPETLSLKPKHLL 441


>TC213121 
          Length = 713

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
 Frame = +2

Query: 119 TDEEA-IESYAIHLVANCHGGVYLVFCIGFIIKTF 152
           TDE A I +  +H++A   GGVY ++  G   KTF
Sbjct: 413 TDEHASIFNKIMHMIATQSGGVYFLYGYGGTGKTF 517


>TC227229 similar to UP|Q712P1 (Q712P1) BZIP protein BZ3, partial (24%)
          Length = 460

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +3

Query: 155 PPPPNDYSCKEPINPHP 171
           PPPP  YS +  I+P+P
Sbjct: 216 PPPPTSYSWRSMISPNP 266


>TC226021 similar to UP|Q9LRZ0 (Q9LRZ0) Arabidopsis thaliana genomic DNA,
           chromosome 3, TAC clone:K20I9, partial (29%)
          Length = 1585

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 5/43 (11%)
 Frame = +3

Query: 121 EEAIESYAI-----HLVANCHGGVYLVFCIGFIIKTFYQPPPP 158
           EEA+   A+     ++++ C G V L   + F + T + PPPP
Sbjct: 498 EEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPP 626


>TC228324 UP|LGUL_SOYBN (P46417) Lactoylglutathione lyase  (Methylglyoxalase)
           (Aldoketomutase) (Glyoxalase I) , complete
          Length = 995

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 26/87 (29%), Positives = 39/87 (43%), Gaps = 2/87 (2%)
 Frame = -3

Query: 9   HEEPILEVLVRMARVVSLVVVDDVVYHLQLLSGNTNGLSI--QTRGMLSPHIHHRMQDVG 66
           H E  L  LVR+      +V+ D++  L      TNG +I  Q R +L   +H + Q   
Sbjct: 366 HPESGLRSLVRIGGHEWRLVIPDLINVLHYYCRFTNGFAIMDQNRNLLVNWVHLQKQ--- 196

Query: 67  ALVELDPGTPVPEVLALDSSLILPDAL 93
                   TPV E+L L   + +P+ L
Sbjct: 195 -------RTPVHEILFL---VFIPNTL 145


>TC217743 similar to UP|Q8L751 (Q8L751) AT4g08180/T12G13_20, partial (23%)
          Length = 994

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
 Frame = +2

Query: 160 DYSCKEPI--------NPHPIHILEFLGSIIIHLLMCYSL 191
           +YSCK           NPH +  +  + SI  HL+ CY L
Sbjct: 8   EYSCKLKFKEQSIIDRNPHQVLYICCMDSIFSHLIYCYFL 127


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,214,178
Number of Sequences: 63676
Number of extensions: 182804
Number of successful extensions: 1371
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of query: 223
length of database: 12,639,632
effective HSP length: 94
effective length of query: 129
effective length of database: 6,654,088
effective search space: 858377352
effective search space used: 858377352
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)