BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0096b.1
(137 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224557 homologue to UP|RS24_ARATH (Q9SS17) 40S ribosomal prote... 265 4e-72
TC224807 homologue to PRF|1909359A.0|445612|1909359A ribosomal p... 262 3e-71
TC224701 homologue to PRF|1909359A.0|445612|1909359A ribosomal p... 262 4e-71
TC224817 homologue to PRF|1909359A.0|445612|1909359A ribosomal p... 197 1e-51
BQ741899 190 2e-49
TC224763 similar to PRF|1909359A.0|445612|1909359A ribosomal pro... 127 5e-45
AW471914 135 5e-33
BE803241 similar to GP|28564876|gb| RPS24 {Saccharomyces castell... 115 5e-27
BE803313 weakly similar to GP|27883560|gb| ribosomal protein S24... 100 4e-22
AI442065 weakly similar to SP|Q9SS17|RS24_ 40S ribosomal protein... 55 1e-08
AI794922 homologue to SP|Q9SS17|RS24_ 40S ribosomal protein S24.... 51 2e-07
CO983030 34 0.019
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 30 0.28
AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica cu... 30 0.36
TC230829 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding prote... 29 0.80
CK605837 28 1.8
TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protei... 28 1.8
TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%) 28 1.8
TC228340 similar to UP|Q9CJT2 (Q9CJT2) OppB, partial (5%) 27 3.0
TC229563 26 5.2
>TC224557 homologue to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein S24,
complete
Length = 1463
Score = 265 bits (678), Expect = 4e-72
Identities = 131/137 (95%), Positives = 137/137 (99%)
Frame = +2
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
MADKAVTIRTRKFMTNRLLSRKQF+VDVLHPGRANVSKAELKEKLAR+YDVKDPNTVFVF
Sbjct: 692 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVF 871
Query: 61 KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
KFRTHFGGGKSTGFGLIYD++ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 872 KFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 1051
Query: 121 GVKKTKAADAAKAGKKK 137
GVKKTKA+DAAKAGKKK
Sbjct: 1052GVKKTKASDAAKAGKKK 1102
>TC224807 homologue to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , complete
Length = 955
Score = 262 bits (670), Expect = 3e-71
Identities = 131/137 (95%), Positives = 135/137 (97%)
Frame = +3
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 141 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 320
Query: 61 KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
KFRTHFGGGKSTGFGLIYDS+ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 321 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 500
Query: 121 GVKKTKAADAAKAGKKK 137
GVKKTKA+DAAKAGKKK
Sbjct: 501 GVKKTKASDAAKAGKKK 551
>TC224701 homologue to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , complete
Length = 849
Score = 262 bits (669), Expect = 4e-71
Identities = 130/137 (94%), Positives = 135/137 (97%)
Frame = +2
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
MADKAVTIRTRKFMTNRLLSRKQF+VDVLHPGRANVSKAELKEKL R+YDVKD NTVFVF
Sbjct: 125 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 304
Query: 61 KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
KFRTHFGGGKSTGFGLIYDS+ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 305 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 484
Query: 121 GVKKTKAADAAKAGKKK 137
GVKKTKA+DAAKAGKKK
Sbjct: 485 GVKKTKASDAAKAGKKK 535
>TC224817 homologue to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , partial (77%)
Length = 628
Score = 197 bits (501), Expect = 1e-51
Identities = 96/102 (94%), Positives = 100/102 (97%)
Frame = +3
Query: 29 LHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYE 88
LHPGRANVSKAELKEKL R+YDVKD NTVFVFKFRTHFGGGKSTGFGLIYDS+ENAKKYE
Sbjct: 321 LHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE 500
Query: 89 PKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADA 130
PKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIRGVKKTKA+DA
Sbjct: 501 PKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDA 626
>BQ741899
Length = 422
Score = 190 bits (482), Expect = 2e-49
Identities = 93/105 (88%), Positives = 100/105 (94%)
Frame = +2
Query: 33 RANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYR 92
R +AELKEKLAR+YDVKDPNTVFVFKFRTHFGGG S+GFGLIYD++ENAKKYEPKYR
Sbjct: 80 REREREAELKEKLARMYDVKDPNTVFVFKFRTHFGGGFSSGFGLIYDTMENAKKYEPKYR 259
Query: 93 LIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
LIRNGLDTKVEKSRKQ+KERKNRAKKIRGVKKTKA+DAAKAGKKK
Sbjct: 260 LIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 394
>TC224763 similar to PRF|1909359A.0|445612|1909359A ribosomal protein S19.
{Solanum tuberosum;} , partial (98%)
Length = 751
Score = 127 bits (320), Expect(2) = 5e-45
Identities = 62/76 (81%), Positives = 66/76 (86%)
Frame = +2
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
MADKAVTIRTR FMT RLLS KQF++DVLHPG AN SKAELKEKL R+YD KD N VF F
Sbjct: 143 MADKAVTIRTRMFMTTRLLSGKQFVIDVLHPGSANDSKAELKEKLRRMYDEKDTNPVFAF 322
Query: 61 KFRTHFGGGKSTGFGL 76
KFRTHFGGGKSTGFG+
Sbjct: 323 KFRTHFGGGKSTGFGV 370
Score = 69.3 bits (168), Expect(2) = 5e-45
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = +1
Query: 94 IRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
+ GL K EKSRKQ+KERKNRAKKIRGV+KTKA+DAAK GKKK
Sbjct: 412 LSTGLSGKEEKSRKQMKERKNRAKKIRGVQKTKASDAAKTGKKK 543
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 77 IYDSLENAKKYEPKYRLIRNGLDTK 101
+YDS+ENAKK EPKYRLIR G + K
Sbjct: 375 LYDSVENAKKCEPKYRLIRKGREIK 449
>AW471914
Length = 247
Score = 135 bits (341), Expect = 5e-33
Identities = 67/82 (81%), Positives = 73/82 (88%)
Frame = +2
Query: 45 LARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEK 104
L R+YD KD +TVF FKF+THFGGGKSTGFGLIYDS+ENA K+EPKYRLIRNGLDTKVEK
Sbjct: 2 LGRMYDEKDTSTVFGFKFQTHFGGGKSTGFGLIYDSVENANKFEPKYRLIRNGLDTKVEK 181
Query: 105 SRKQLKERKNRAKKIRGVKKTK 126
SRKQL ER AKK+RGVKKTK
Sbjct: 182 SRKQLMER*IIAKKMRGVKKTK 247
>BE803241 similar to GP|28564876|gb| RPS24 {Saccharomyces castellii}, partial
(58%)
Length = 342
Score = 115 bits (289), Expect = 5e-27
Identities = 59/88 (67%), Positives = 67/88 (76%)
Frame = +3
Query: 5 AVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRT 64
+VTIRTRK +TNRLL+RKQ I+DVLHP RANVSK EL + +A + KD VFVF RT
Sbjct: 78 SVTIRTRKVLTNRLLNRKQMIIDVLHPNRANVSKKELTDLIA*EFQAKDSKAVFVFGMRT 257
Query: 65 HFGGGKSTGFGLIYDSLENAKKYEPKYR 92
FGG KSTGF LIYDSLE+A EPKYR
Sbjct: 258 AFGGQKSTGFALIYDSLEDALDSEPKYR 341
>BE803313 weakly similar to GP|27883560|gb| ribosomal protein S24 {Ictalurus
punctatus}, partial (43%)
Length = 379
Score = 99.8 bits (247), Expect = 4e-22
Identities = 55/121 (45%), Positives = 75/121 (61%)
Frame = +2
Query: 8 IRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFG 67
+RT + +T +LL+R+Q I+DVLHP ANVS EL + + + D N V + RT
Sbjct: 2 MRTLEVLTYKLLTRRQMIIDVLHPHHANVS*KELTD*IDQEIKANDSNADCVLRMRTAVR 181
Query: 68 GGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKA 127
G +S+G LIYDS E+A EPKYRL+R GL+ K + S +Q +E KNR K+RG K
Sbjct: 182 GQQSSG*ALIYDSSEDALDSEPKYRLVRPGLNAKKDGSHQQRRELKNRKLKVRGSNMAKV 361
Query: 128 A 128
A
Sbjct: 362 A 364
>AI442065 weakly similar to SP|Q9SS17|RS24_ 40S ribosomal protein S24.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (33%)
Length = 133
Score = 55.1 bits (131), Expect = 1e-08
Identities = 29/44 (65%), Positives = 32/44 (71%)
Frame = +2
Query: 6 VTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLY 49
VTIR K MTN L+SRKQ VDVLH RANV A LKEKL ++Y
Sbjct: 2 VTIRPTKVMTNMLISRKQMDVDVLHSWRANVFHAVLKEKLGQMY 133
>AI794922 homologue to SP|Q9SS17|RS24_ 40S ribosomal protein S24.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (30%)
Length = 413
Score = 50.8 bits (120), Expect = 2e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +1
Query: 1 MADKAVTIRTRKFMTNRLLSRKQFI 25
MADKAVTIRTRKFMTNRLLSRKQF+
Sbjct: 46 MADKAVTIRTRKFMTNRLLSRKQFV 120
Score = 38.9 bits (89), Expect = 8e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +3
Query: 25 IVDVLHPGRANVSKAELK 42
IVDVLHPGRANVSKAELK
Sbjct: 360 IVDVLHPGRANVSKAELK 413
>CO983030
Length = 505
Score = 34.3 bits (77), Expect = 0.019
Identities = 18/53 (33%), Positives = 29/53 (53%)
Frame = +3
Query: 85 KKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
KK + K + + K +K +K+ K++KN+ KK +KKT+ K KKK
Sbjct: 198 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKXXKIKKTQKKKXXKT*KKK 356
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 30.4 bits (67), Expect = 0.28
Identities = 18/57 (31%), Positives = 28/57 (48%)
Frame = +3
Query: 81 LENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
+E KK K ++G EK +K+ K++K + KK+ G KTK K +K
Sbjct: 600 IEEIKKEGEKEDKGKDGGKEVKEKKKKEDKDKKEKKKKVTGKDKTKDLSTLKQKLEK 770
>AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica
cultivar-group)}, partial (24%)
Length = 235
Score = 30.0 bits (66), Expect = 0.36
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 100 TKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
+ VEK +K+ K++K + KK + KK K K KKK
Sbjct: 21 SSVEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 134
>TC230829 weakly similar to UP|Q9LDH1 (Q9LDH1) SigA binding protein, partial
(28%)
Length = 862
Score = 28.9 bits (63), Expect = 0.80
Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 2/57 (3%)
Frame = +1
Query: 46 ARLYDVKDPNTV-FVFKFRTHF-GGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDT 100
AR + + PN+ F+ R+H GGG+ + L S +KYEP+ RL+R G T
Sbjct: 331 ARSHPLPRPNSP*FLLFCRSHQRGGGQCSQCELCCSSRSRRRKYEPR-RLLRGGTTT 498
>CK605837
Length = 498
Score = 27.7 bits (60), Expect = 1.8
Identities = 14/48 (29%), Positives = 24/48 (49%)
Frame = +1
Query: 90 KYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
+ ++ G+D +K+ K++K + KK + KK K K KKK
Sbjct: 13 RIKITAKGIDMASSFKQKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 156
>TC207029 weakly similar to UP|Q7R8E7 (Q7R8E7) Ran-binding protein, partial
(19%)
Length = 712
Score = 27.7 bits (60), Expect = 1.8
Identities = 20/59 (33%), Positives = 32/59 (53%)
Frame = +1
Query: 79 DSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
D E K+ E + + +G + K EK +K+ K++K + KK+ G KTK A K +K
Sbjct: 193 DIEETTKEGEKEDKEKDDGKEVK-EKKKKEDKDKKEK-KKVTGKDKTKDLSALKQKLEK 363
>TC207814 similar to UP|Q75XU7 (Q75XU7) RIO kinase, partial (43%)
Length = 1259
Score = 27.7 bits (60), Expect = 1.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 79 DSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
D N+++ P + + D K + + + +K ++ R +KTK A K KKK
Sbjct: 710 DDESNSEEDSPSESEVDDPADKKAARKEARKENKKKVKEEKREARKTKVPKAVKKRKKK 886
Score = 25.4 bits (54), Expect = 8.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 82 ENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
EN KK + + R R TKV K+ K+ K++ +AKK R
Sbjct: 803 ENKKKVKEEKREARK---TKVPKAVKKRKKKLAKAKKTR 910
>TC228340 similar to UP|Q9CJT2 (Q9CJT2) OppB, partial (5%)
Length = 466
Score = 26.9 bits (58), Expect = 3.0
Identities = 17/58 (29%), Positives = 29/58 (49%)
Frame = +2
Query: 80 SLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
++ ++ +P+ ++ +N E S+ Q K+ KN KKTK A+ K KKK
Sbjct: 77 TMTSSNSPKPEKKITKN-----TEISKTQKKKTKNAETPKTEKKKTKNAETPKTEKKK 235
>TC229563
Length = 669
Score = 26.2 bits (56), Expect = 5.2
Identities = 22/57 (38%), Positives = 27/57 (46%), Gaps = 1/57 (1%)
Frame = +2
Query: 82 ENAKKYEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK 137
+N + K L + L+ K RKQ K+R R KK R VKK K K KKK
Sbjct: 92 QNQNQKRKKRNLQKKRLNLKRRSHQRKQRKKRVVRTKKKRVVKKAK-----KKPKKK 247
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,897,894
Number of Sequences: 63676
Number of extensions: 38684
Number of successful extensions: 295
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of query: 137
length of database: 12,639,632
effective HSP length: 87
effective length of query: 50
effective length of database: 7,099,820
effective search space: 354991000
effective search space used: 354991000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0096b.1