BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0093b.4
(565 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230005 similar to UP|Q6UEI7 (Q6UEI7) Timing of CAB expression ... 202 2e-52
TC229396 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-re... 108 6e-24
TC230545 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator... 90 3e-18
AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidops... 78 1e-14
TC224788 weakly similar to UP|Q6UV11 (Q6UV11) Pseudo-response re... 78 1e-14
TC226490 similar to UP|O81035 (O81035) Expressed protein (Pseudo... 77 2e-14
BQ629079 similar to GP|10281004|dbj pseudo-response regulator 7 ... 77 3e-14
BQ611989 similar to GP|10281004|db pseudo-response regulator 7 {... 74 1e-13
TC227068 similar to UP|Q6UV11 (Q6UV11) Pseudo-response regulator... 74 2e-13
TC228296 similar to UP|O81035 (O81035) Expressed protein (Pseudo... 74 2e-13
TC226491 homologue to UP|O81035 (O81035) Expressed protein (Pseu... 73 3e-13
TC229109 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator... 73 4e-13
TC212083 similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator... 70 2e-12
BF070582 similar to GP|10281006|dbj pseudo-response regulator 5 ... 67 2e-11
BM309528 similar to GP|10281006|dbj pseudo-response regulator 5 ... 63 3e-10
TC222281 similar to UP|Q6LA43 (Q6LA43) Pseudo-response regulator... 60 3e-09
TC227924 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator... 60 3e-09
TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protei... 59 4e-09
TC226682 similar to UP|O80366 (O80366) Responce reactor4 (AT3g57... 59 8e-09
TC216962 similar to UP|Q6J3Q5 (Q6J3Q5) Male-specific transcripti... 58 1e-08
>TC230005 similar to UP|Q6UEI7 (Q6UEI7) Timing of CAB expression 1, partial
(15%)
Length = 856
Score = 202 bits (515), Expect = 2e-52
Identities = 100/121 (82%), Positives = 111/121 (91%)
Frame = +3
Query: 445 SFPYYPMNICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKK 504
+FPYYPMNICLQPGQ+ST +SWPSLGSS SCEV +SK DRREAALMKF+QKRK+RCFDKK
Sbjct: 3 NFPYYPMNICLQPGQIST-NSWPSLGSSSSCEVQISKVDRREAALMKFRQKRKERCFDKK 179
Query: 505 IRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADYDEEEEEEEDNHVARDSSLED 564
IRYVNRKRLAERRPRVRGQFVRKL+G++V LNGQPAS DYD E++EEEDNH ARDSS E
Sbjct: 180 IRYVNRKRLAERRPRVRGQFVRKLNGINVDLNGQPASTDYD-EDDEEEDNHRARDSSPEV 356
Query: 565 A 565
A
Sbjct: 357 A 359
>TC229396 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-response
regulator 3), partial (28%)
Length = 1013
Score = 108 bits (270), Expect = 6e-24
Identities = 64/160 (40%), Positives = 85/160 (53%)
Frame = +1
Query: 41 DDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLK 100
+DD + V LL CSY+VT V + Q L ID++L EV +PI G+ LL
Sbjct: 1 EDDDSTRHVVRALLQNCSYKVTAVSNGLQAWKVLEDPENGIDLVLTEVAMPILSGIGLLC 180
Query: 101 YLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 160
+ K L+ IPVIMMS+ D + IV KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 181 KIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSS 360
Query: 161 GLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKR 200
+ + S +DA N++ S D +D R
Sbjct: 361 SGSGSESATLTRKFAKSRSNDAYENNSD--SSDENDYGSR 474
>TC230545 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator 5, partial
(19%)
Length = 469
Score = 89.7 bits (221), Expect = 3e-18
Identities = 48/126 (38%), Positives = 72/126 (57%)
Frame = +3
Query: 21 ANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY 80
A++ + F+ R +R+LL + D + + + LL KC Y+V + + L +
Sbjct: 87 ASAVHWERFLPRMVLRVLLVEADDSTRQIIAALLRKCGYKVVAFCDGLKAWETLKNKAFD 266
Query: 81 IDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKP 140
+D+IL EVDLP G LL + + IPVIMMS+ D V +V KC+ GAAD+L+KP
Sbjct: 267 LDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVFKCMLKGAADFLIKP 446
Query: 141 LRTNEL 146
+R NEL
Sbjct: 447 VRKNEL 464
>AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidopsis
thaliana}, partial (14%)
Length = 408
Score = 77.8 bits (190), Expect = 1e-14
Identities = 40/102 (39%), Positives = 60/102 (58%)
Frame = +3
Query: 57 CSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMM 116
C Y+VT + A + L DI+L++V +P G KLL+++ + +L PVIMM
Sbjct: 21 CLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDL---PVIMM 191
Query: 117 SAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 158
SA D +V+K + GA DYL+KP+R L N+W H+ R R+
Sbjct: 192 SADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRMRK 317
>TC224788 weakly similar to UP|Q6UV11 (Q6UV11) Pseudo-response regulator
protein (Fragment), partial (12%)
Length = 1699
Score = 77.8 bits (190), Expect = 1e-14
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = +3
Query: 485 REAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADY 544
REAAL KF+ KRK+RCF+KK+RY +RK+LAE+RPR+RGQFVR++ ++
Sbjct: 702 REAALTKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRRI------------VSEG 845
Query: 545 DEEEEEEEDNHVARDSSLE 563
EE++++ DN V D+S++
Sbjct: 846 KEEKDKQSDNLVPGDNSID 902
>TC226490 similar to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (9%)
Length = 1411
Score = 77.4 bits (189), Expect = 2e-14
Identities = 57/185 (30%), Positives = 90/185 (47%), Gaps = 15/185 (8%)
Frame = +1
Query: 358 FREEYYPQGSLYPSNGSRG-SKLEPSGMPAQ---HAYPYYYNSGVVNHVMLPSSA--QLY 411
F +Y Q ++P + + + E S P +YP +NS ++ ++ Q
Sbjct: 520 FTSLFYAQSGIHPMSSPKPVCQNESSPFPTSTSTQSYPESHNSDQLHDCSNDATCLNQNV 699
Query: 412 QKNMQDIHSHANSSMIAQYNHLAQCSPHANGMTSFPYYPMNICLQPGQVST--PHSWPSL 469
+ N H+ +S + Q + C AN + S Y M+ S + P
Sbjct: 700 KDNTDSDHARHDSPVADQSAGNSLCHDAANHVNSSAYGSMDSGNDGNATSAIVSKNAPDG 879
Query: 470 GSSGSCE-------VNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRG 522
S C + ++ +REA L+KF+ KRK+RCF+KK+RY +RKRLAE+RPRV+G
Sbjct: 880 FSDSGCHNYDGFRVTDPHRSSQREAVLVKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKG 1059
Query: 523 QFVRK 527
QFVR+
Sbjct: 1060QFVRQ 1074
>BQ629079 similar to GP|10281004|dbj pseudo-response regulator 7 {Arabidopsis
thaliana}, partial (7%)
Length = 436
Score = 76.6 bits (187), Expect = 3e-14
Identities = 40/92 (43%), Positives = 64/92 (69%)
Frame = +3
Query: 472 SGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGV 531
+G+ EV L+ REAAL KF+ KRK+RCF+K++RY +RK+LAE+RPR++GQFVR++
Sbjct: 141 NGTDEVRLAL---REAALTKFRLKRKERCFEKRVRYHSRKKLAEQRPRIKGQFVRRI--- 302
Query: 532 DVYLNGQPASADYDEEEEEEEDNHVARDSSLE 563
++ EE++++ DN V D+S++
Sbjct: 303 ---------VSEGKEEKDKQSDNLVPGDNSID 371
>BQ611989 similar to GP|10281004|db pseudo-response regulator 7 {Arabidopsis
thaliana}, partial (15%)
Length = 460
Score = 74.3 bits (181), Expect = 1e-13
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 37/151 (24%)
Frame = +2
Query: 43 DPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYL 102
D + V LL CSY+V + Q L +ID++L EV +P G+ LL +
Sbjct: 2 DDSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKI 181
Query: 103 SRDKELRRIPVI-------------------------------------MMSAKDEVPIV 125
K + IP++ +MS+ D + +V
Sbjct: 182 MGHKTRKNIPLVSKFFQLLIYVWFEAFLFLISCCKRATLFYGF*WDWSAVMSSHDSMGLV 361
Query: 126 VKCLRLGAADYLVKPLRTNELLNLWTHMWRR 156
KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 362 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 454
>TC227068 similar to UP|Q6UV11 (Q6UV11) Pseudo-response regulator protein
(Fragment), partial (26%)
Length = 1737
Score = 73.9 bits (180), Expect = 2e-13
Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Frame = +1
Query: 458 GQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDR---CFDKKIRYVNRKRLA 514
G S + GS + V+ +K +RE AL KF+QKRK+R CF KK+RY +RKRLA
Sbjct: 1210 GLTGNSGSGDASGSGSANRVDQNKTSQREVALTKFRQKRKERRERCFHKKVRYQSRKRLA 1389
Query: 515 ERRPRVRGQFVRKLS 529
E+RPR RGQFVR+ S
Sbjct: 1390 EQRPRFRGQFVRQTS 1434
>TC228296 similar to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (14%)
Length = 1371
Score = 73.6 bits (179), Expect = 2e-13
Identities = 32/48 (66%), Positives = 43/48 (88%)
Frame = +3
Query: 481 KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKL 528
+ +REAAL KF+ KRKDRC++KK+RY +RKRLAE+RPRV+GQFVR++
Sbjct: 840 RTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQV 983
>TC226491 homologue to UP|O81035 (O81035) Expressed protein (Pseudo-response
regulator 9) (Timing of CAB expression 1-like protein),
partial (9%)
Length = 730
Score = 73.2 bits (178), Expect = 3e-13
Identities = 32/46 (69%), Positives = 43/46 (92%)
Frame = +3
Query: 482 ADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRK 527
+ +REAAL+KF+ KRK+RCF+KK+RY +RKRLAE+RPRV+GQFVR+
Sbjct: 132 SSQREAALVKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQ 269
>TC229109 similar to UP|Q6LA42 (Q6LA42) Pseudo-response regulator 5, partial
(7%)
Length = 1011
Score = 72.8 bits (177), Expect = 4e-13
Identities = 36/76 (47%), Positives = 54/76 (70%)
Frame = +2
Query: 478 NLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNG 537
N ++ +REAAL KF+ KRK+RC++KK+RY +RK+LAE+RPRV+GQFVR+ ++
Sbjct: 563 NSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQ-------VHP 721
Query: 538 QPASADYDEEEEEEED 553
P A+ D +E + D
Sbjct: 722 DPLVAEKDGKEYDHSD 769
>TC212083 similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator, partial
(35%)
Length = 708
Score = 70.5 bits (171), Expect = 2e-12
Identities = 54/182 (29%), Positives = 88/182 (47%), Gaps = 20/182 (10%)
Frame = +1
Query: 82 DIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPL 141
DI++++V +P G KLL+++ + +L PVIMMSA D +V+K + GA DYL+KP+
Sbjct: 13 DIVISDVHMPDMDGFKLLEHIGLEMDL---PVIMMSADDGKSVVMKGVTHGACDYLIKPV 183
Query: 142 RTNELLNLWTHMWRRRR-------MLGLAE------KNILSYDFDMVASDPSDANTNSTT 188
R L N+W H+ R+R+ G AE K D+ A++ S N+
Sbjct: 184 RIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRR 363
Query: 189 LFSDDTDDRSKRSTNPEAAQQEPEVNVSISKAAAVIEELPGAQISECRP-------NVPG 241
++ +DR ST ++P V S+ + + I + P NVPG
Sbjct: 364 DEEEEAEDRDDTST-----LKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPG 528
Query: 242 IS 243
++
Sbjct: 529 LT 534
>BF070582 similar to GP|10281006|dbj pseudo-response regulator 5 {Arabidopsis
thaliana}, partial (7%)
Length = 410
Score = 67.0 bits (162), Expect = 2e-11
Identities = 37/103 (35%), Positives = 54/103 (51%)
Frame = -2
Query: 114 IMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFD 173
IMMS++D + V KC+ GAADYLVKP+R NEL NLW H+WRR+ + I +
Sbjct: 409 IMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQS----STTGINGPQDE 242
Query: 174 MVASDPSDANTNSTTLFSDDTDDRSKRSTNPEAAQQEPEVNVS 216
VA +A + + + D + N E ++ + VS
Sbjct: 241 SVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQVS 113
>BM309528 similar to GP|10281006|dbj pseudo-response regulator 5 {Arabidopsis
thaliana}, partial (14%)
Length = 431
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/120 (32%), Positives = 60/120 (49%)
Frame = +1
Query: 3 SEAEEILNLNSRENNCGGANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVT 62
S +E+ + EN+ A + F+ R +R+LL + D + + + LL KCSY V
Sbjct: 73 SRMDELNGAMTTENS--NAEVVRWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVI 246
Query: 63 PVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEV 122
V + + L + +D+IL EV+LP G LL + + IPVIMMS+ D V
Sbjct: 247 AVPDGLKAWETLKKKAPELDLILTEVELPAISGFALLSLIMEHDICKNIPVIMMSSHDSV 426
>TC222281 similar to UP|Q6LA43 (Q6LA43) Pseudo-response regulator 2, partial
(30%)
Length = 843
Score = 60.1 bits (144), Expect = 3e-09
Identities = 35/119 (29%), Positives = 61/119 (50%)
Frame = +1
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+LL + D S+ E+ L Y+V+ + + AL++ + + + EV
Sbjct: 391 LRVLLLEGDSSSAAEIREQLEAMDYKVSTFYDENEALSALSSSPKGFHVAIVEVSTSCSL 570
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHM 153
G K+L K+L P IM S + ++KC+ LGA ++L KPL ++L N+W H+
Sbjct: 571 GG--FKFLENAKDL---PTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHV 732
>TC227924 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator, partial
(50%)
Length = 994
Score = 59.7 bits (143), Expect = 3e-09
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Frame = +1
Query: 34 KVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQY---------IDII 84
K+ +L DD + + LL S +VT V S + + L +G+ +++I
Sbjct: 205 KLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDGEKSSIGLDSVKVNLI 384
Query: 85 LAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTN 144
+ + +P G +LLK + R +PV++MS+++ + + CL GA ++L+KP++ +
Sbjct: 385 MTDYSMPGMTGYELLKKIKESSVFREVPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLS 564
Query: 145 ELLNLWTHMWRRRRMLGLAEKNILSYDFDMVAS 177
++ + + R M G+ S D + S
Sbjct: 565 DVKRVTDFIMRGEGMKGVKISKKRSRSDDCIPS 663
>TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protein, partial
(48%)
Length = 877
Score = 59.3 bits (142), Expect = 4e-09
Identities = 40/165 (24%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Frame = +2
Query: 2 ESEAEEILNLNSRENNCGGANSKSGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQV 61
E ++ +++ N G K + +V +L DD + + LL + +V
Sbjct: 44 EMDSNSVVSWPRMPENINGFGLKQNQS----EEVHVLAVDDSTVDRKVIEHLLKVLACKV 211
Query: 62 TPVRS---ARQVIDALNAE----------GQYIDIILAEVDLPIKKGMKLLKYLSRDKEL 108
T V S A Q++ L+ + G +D+I+ + +P G +LLK +
Sbjct: 212 TAVDSGLRALQLLGLLDEQKIPSETNGFVGLKVDLIITDYCMPGMTGYELLKRIKESSTF 391
Query: 109 RRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHM 153
+ PV++MS+++ +P + +CL GA D++VKP++ +++ L +M
Sbjct: 392 KETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYM 526
>TC226682 similar to UP|O80366 (O80366) Responce reactor4
(AT3g57040/F24I3_120), partial (60%)
Length = 1343
Score = 58.5 bits (140), Expect = 8e-09
Identities = 37/139 (26%), Positives = 67/139 (47%), Gaps = 18/139 (12%)
Frame = +3
Query: 33 SKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDAL------------------ 74
S+ +L DD + + LL SY+VT V S + ++ L
Sbjct: 375 SQFHVLAVDDSLIDRKLIERLLRTSSYEVTTVDSGSKALEFLGLCENDESNPSTPYVCPN 554
Query: 75 NAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAA 134
N + +++++ + +P G LLK + LR IPV++MS+++ + +CL GA
Sbjct: 555 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 734
Query: 135 DYLVKPLRTNELLNLWTHM 153
++ +KP+R ++L L HM
Sbjct: 735 EFFLKPVRLSDLNKLKPHM 791
>TC216962 similar to UP|Q6J3Q5 (Q6J3Q5) Male-specific transcription factor
M88B7.2, partial (31%)
Length = 1446
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +3
Query: 480 SKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQP 539
S RR A+L++F++KRK+RCFDKKIRY RK +A+R R GQF L P
Sbjct: 531 SNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFAS--------LKESP 686
Query: 540 ASADYDEEE 548
S+++D +
Sbjct: 687 GSSNWDSAQ 713
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,311,924
Number of Sequences: 63676
Number of extensions: 303903
Number of successful extensions: 1800
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1745
length of query: 565
length of database: 12,639,632
effective HSP length: 102
effective length of query: 463
effective length of database: 6,144,680
effective search space: 2844986840
effective search space used: 2844986840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0093b.4