TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0089b.6
         (647 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC220322                                                               83  3e-32
BM308209                                                               66  5e-27
TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transp...    60  2e-09
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1...    57  3e-08
TC220753                                                               41  0.001
TC232149                                                               32  0.003
BM108247 weakly similar to PIR|H84710|H847 Mutator-like transpos...    39  0.009
AI856054                                                               35  0.14
TC229129 similar to UP|Q6NM52 (Q6NM52) At4g15770, complete             29  7.5

>TC220322 
          Length = 1264

 Score = 82.8 bits (203), Expect(2) = 3e-32
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
 Frame = +2

Query: 386 AKATYHQLWTKKMMELQALHPEAYTWLMQIPTSAWCKQAFTFYTKCDVLMNKLYESFNAT 445
           AK+T    +   M  L+ ++ +A+ +L + P  AW K  F+   K D + N   E FN  
Sbjct: 8   AKSTTVAEFEGHMAHLKTINCQAWEYLNKWPKQAWTKAHFSTIPKVDNICNNTCEVFNFR 187

Query: 446 ILLARDKPVLTMVD*IRSYIMGRFATMNEKMDKY*RGVMPKPLERLKWEIQMTSHLIPQC 505
           IL  R KP++TM++ IRSYIM   A    K+      +     +RL+ E    +   P  
Sbjct: 188 ILQYRCKPIITMLEEIRSYIMRTMAARKVKLSGKPGPLCLVQYKRLEKEFHFANQWTPIW 367

Query: 506 CG*DM---FEVKHIVSHDQFIVDLKKHTCMCNFWELVGIPFRHEIAAIS 551
           CG +M   +EV   +  ++  V+L   TC C  W+L G+P RH IA I+
Sbjct: 368 CGDNMGLRYEVH--MWGNKVEVNLAGWTCTCGVWQLTGMPCRHAIATIT 508



 Score = 74.7 bits (182), Expect(2) = 3e-32
 Identities = 38/97 (39%), Positives = 48/97 (49%)
 Frame = +1

Query: 551 SHNGQKPEDFVHAYYRRAAYRATYEHLVSPISGQKLWPTTNDEYILSPLYRRALGRPKKL 610
           SH G KPED  H +    AY  TY+H + P+ G + W  T   + + P  R   GRPKK 
Sbjct: 508 SHKGGKPEDMCHEWLSIEAYNKTYQHFIEPVQGPQYWAQTQYTHPVPPYKRVQRGRPKKN 687

Query: 611 RMRDPHEDTTNNHTRLHIGVSRNKFSRCGQFGHNTRS 647
           R R   ED    H +L   ++     RCGQ  HN RS
Sbjct: 688 RKRSVDEDNVTGH-KLKRKLAEFTCGRCGQTNHNIRS 795


>BM308209 
          Length = 435

 Score = 65.9 bits (159), Expect(3) = 5e-27
 Identities = 27/52 (51%), Positives = 40/52 (76%)
 Frame = +2

Query: 401 LQALHPEAYTWLMQIPTSAWCKQAFTFYTKCDVLMNKLYESFNATILLARDK 452
           ++ ++ EAY WL+++ T  W K  F++YTKCDVLMN L ++FN+TIL AR+K
Sbjct: 122 IKEVNNEAYDWLIKVGTKLWRKHTFSYYTKCDVLMNNLCDAFNSTILCAREK 277



 Score = 49.3 bits (116), Expect(3) = 5e-27
 Identities = 21/37 (56%), Positives = 28/37 (74%)
 Frame = +3

Query: 362 RHLYANFKNFFGGRVVIRNLMMDAAKATYHQLWTKKM 398
           RH+Y NFKN F G  ++RNLMM AAKA++ + W +KM
Sbjct: 6   RHIYNNFKNKFVGGTLLRNLMMRAAKASFEEAWDEKM 116



 Score = 45.1 bits (105), Expect(3) = 5e-27
 Identities = 23/58 (39%), Positives = 31/58 (52%)
 Frame = +3

Query: 493 WEIQMTSHLIPQCCG*DMFEVKHIVSHDQFIVDLKKHTCMCNFWELVGIPFRHEIAAI 550
           W   ++ HL+        FEV H +  D+FIV+L   +C  N WE+ GI  RH  AAI
Sbjct: 285 WFATLSGHLV--------FEVSHSMLSDKFIVNLNSWSCS*NLWEITGILCRHACAAI 434


>TC222000 weakly similar to PIR|H84710|H84710 Mutator-like transposase
           [imported] - Arabidopsis thaliana {Arabidopsis
           thaliana;} , partial (12%)
          Length = 617

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 43/132 (32%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
 Frame = +2

Query: 523 IVDLKKHTCMCNFWELVGIPFRHEIAAISHNGQKPEDFVHAYYRRAAYRATYEHLVSPIS 582
           IV++  H+C C  W+L GIP  H  AA+    +    F    +  A++R TY   + PI 
Sbjct: 17  IVNIGSHSCSCRDWQLNGIPCSHAAAALISCRKDVYAFSQKCFTAASFRDTYAETIHPIP 196

Query: 583 GQKLWPTTN----DEYIL---SPLYRRALGRPKKLRMRDPHEDTTNNHTRLHIGVSRNKF 635
           G+  W  T     D+ IL    P  RR  GRP+K    D   D       +H        
Sbjct: 197 GKLEWSKTGNSSMDDNILVVRPPKLRRPPGRPEKRMCVD---DLNREKHTVHC------- 346

Query: 636 SRCGQFGHNTRS 647
           SRC Q GH  R+
Sbjct: 347 SRCNQTGHYKRT 382


>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
           {Arabidopsis thaliana;} , partial (6%)
          Length = 814

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
 Frame = +1

Query: 523 IVDLKKHTCMCNFWELVGIPFRHEIAAISHNGQKPEDFVHAYYRRAAYRATYEHLVSPIS 582
           IVD+    C C  W+L G+P  H IA     G+ P D+   Y+    YR TY   + P+ 
Sbjct: 64  IVDIDNWDCSCKGWQLTGVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVP 243

Query: 583 GQKLWPTTNDE----YILSPLYRRALGRPKKLRMRDPHEDTTNNHTRLHIGVSRNKFSRC 638
                P   +      ++ P  +R  GRPK  ++             + I   + + S+C
Sbjct: 244 NVDKPPVQGESTALVMVIPPPTKRPPGRPKMKQVES-----------IDIIKRQLQCSKC 390

Query: 639 GQFGHNTRS 647
              GHN ++
Sbjct: 391 KGLGHNRKT 417


>TC220753 
          Length = 1312

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +2

Query: 524 VDLKKHTCMCNFWELVGIPFRHEIAAISHNGQKPEDFVHAYYRRAAYRATYEHLVSPISG 583
           V L +  C    ++ + +P  H IAA +      +DFV   Y+       Y+H    +  
Sbjct: 215 VKLNEWLCDYGQFQALRLPCSHAIAACAFCNLNYDDFVDPVYKLENIFKVYQHHFHSLGS 394

Query: 584 QKLWPTTNDEYILS-PLYRRAL-GRPKKLRMRDPHEDTTNNHTRLHIGVSRNKFSRCGQF 641
           +  WP     + +S P  RR + GRP   R+ +  +++  N  +        K S C   
Sbjct: 395 EDTWPQYLGPHFMSDPSKRRQISGRPATTRIHNEMDESIPNRLK--------KCSLCKTE 550

Query: 642 GHN 644
           GHN
Sbjct: 551 GHN 559


>TC232149 
          Length = 1005

 Score = 32.0 bits (71), Expect(2) = 0.003
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
 Frame = -3

Query: 454 VLTMVD*IRSYIMGRFATMNEKMDKY*RGVMPKPLERL-KWEIQM---TSHLIPQCCG*D 509
           +L M + IR+YIM +  +   KM    R ++P    R+ K +++    T++ +    G  
Sbjct: 427 ILNMCEDIRTYIMCKMKSDKLKMATRLRPLVPMQQSRIEKGKVESNK*TANWVGDPDG-T 251

Query: 510 MFEVKHIVSHDQFIVDLKKHTCMCNFWELVGIP 542
            F+V H  +  +  VDL+  +  C  W+L+GIP
Sbjct: 250 RFKVCHYDT--RLNVDLQN*SFTCRMWQLIGIP 158



 Score = 27.3 bits (59), Expect(2) = 0.003
 Identities = 17/55 (30%), Positives = 30/55 (53%)
 Frame = -1

Query: 398 MMELQALHPEAYTWLMQIPTSAWCKQAFTFYTKCDVLMNKLYESFNATILLARDK 452
           M  ++ ++ +A+ +L + P  +W K  F+    C     K YES+NA IL  ++K
Sbjct: 573 MKVVKRMNEKAWAYLDKGPRESWTKAYFS--ENC-----KDYESYNAKILKLKNK 430


>BM108247 weakly similar to PIR|H84710|H847 Mutator-like transposase
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 265

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 25/79 (31%), Positives = 41/79 (51%)
 Frame = +2

Query: 380 NLMMDAAKATYHQLWTKKMMELQALHPEAYTWLMQIPTSAWCKQAFTFYTKCDVLMNKLY 439
           +L+  A+ AT    + +KM E++ + PEA  WL Q   S W    F   T+   L + + 
Sbjct: 20  HLLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFXPSQWALVHFK-GTRFGHLSSNI- 193

Query: 440 ESFNATILLARDKPVLTMV 458
           E FN  IL  R+ P++ ++
Sbjct: 194 EEFNKWILDTRELPIIXVI 250


>AI856054 
          Length = 173

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/37 (43%), Positives = 28/37 (75%)
 Frame = -1

Query: 440 ESFNATILLARDKPVLTMVD*IRSYIMGRFATMNEKM 476
           ESFN+ IL AR+K +++M++ I  Y+M R+ T ++K+
Sbjct: 137 ESFNSVILEAREKLIVSMLEDIHIYLMERWDTNSKKV 27


>TC229129 similar to UP|Q6NM52 (Q6NM52) At4g15770, complete
          Length = 661

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/34 (32%), Positives = 17/34 (49%)
 Frame = -1

Query: 394 WTKKMMELQALHPEAYTWLMQIPTSAWCKQAFTF 427
           W K   + + +H  + + L   PTSAWC+    F
Sbjct: 628 WIKTNYKTRKMHQSSSSILKYSPTSAWCRTTIPF 527


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.341    0.148    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,880,253
Number of Sequences: 63676
Number of extensions: 477316
Number of successful extensions: 3200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3198
length of query: 647
length of database: 12,639,632
effective HSP length: 103
effective length of query: 544
effective length of database: 6,081,004
effective search space: 3308066176
effective search space used: 3308066176
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 62 (28.5 bits)