TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0087.11
         (146 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211425 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transac...   216  3e-57
TC231532 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transac...   154  2e-38
TC219867 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transac...   150  2e-37
BG404888                                                              140  3e-34
TC213302 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transac...   105  3e-32
TC220120 similar to GB|AAP80172.1|32362289|BT009671 At1g17330 {A...    27  3.5
TC220119 similar to GB|AAP80172.1|32362289|BT009671 At1g17330 {A...    27  3.5
TC221709                                                               27  3.5
TC217988 similar to UP|Q9SSU7 (Q9SSU7) Endo-1,4-beta-glucanase, ...    26  7.8
TC208131 weakly similar to UP|Q6K2F0 (Q6K2F0) Heat shock protein...    26  7.8

>TC211425 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transactivated
           protein A-like {Oryza sativa (japonica cultivar-group);}
           , partial (59%)
          Length = 589

 Score =  216 bits (550), Expect = 3e-57
 Identities = 107/114 (93%), Positives = 109/114 (94%)
 Frame = +2

Query: 6   SNGFDGARDVSLQDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVAR 65
           SNGF   RDVSLQ+LSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVA+
Sbjct: 35  SNGFPRKRDVSLQELSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVAK 214

Query: 66  GLPNWSCDDKEHLEEELSDVLLYLVRLADVCGLDLGQAALAKIVKNAQKYPVTS 119
           GLPNWS DDKEHLEEELSDVLLYLVRLADVCGLDLGQAAL KIVKNAQKYPVTS
Sbjct: 215 GLPNWSSDDKEHLEEELSDVLLYLVRLADVCGLDLGQAALTKIVKNAQKYPVTS 376


>TC231532 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transactivated
           protein A-like {Oryza sativa (japonica cultivar-group);}
           , partial (52%)
          Length = 732

 Score =  154 bits (388), Expect = 2e-38
 Identities = 76/112 (67%), Positives = 88/112 (77%)
 Frame = +3

Query: 5   KSNGFDGARDVSLQDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVA 64
           K  G      VSL  L + L EFA+ R W+QYHSPRNLLLALVGEVGELSEIFQWKGEV 
Sbjct: 219 KMTGVPQEAPVSLDQLKQILDEFAKERDWEQYHSPRNLLLALVGEVGELSEIFQWKGEVP 398

Query: 65  RGLPNWSCDDKEHLEEELSDVLLYLVRLADVCGLDLGQAALAKIVKNAQKYP 116
           +GLP+W  ++K HL EELSDVLLYLVRL+D+CG+DLG+AAL K+  NA KYP
Sbjct: 399 KGLPDWKEEEKVHLGEELSDVLLYLVRLSDICGVDLGKAALRKVQLNAIKYP 554


>TC219867 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transactivated
           protein A-like {Oryza sativa (japonica cultivar-group);}
           , partial (63%)
          Length = 660

 Score =  150 bits (379), Expect = 2e-37
 Identities = 71/102 (69%), Positives = 87/102 (84%)
 Frame = +3

Query: 15  VSLQDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVARGLPNWSCDD 74
           V+L  L + +A+FA+ R WD++HSPRNLLLALVGEVGELSEIFQWKGEV +GLP+W  ++
Sbjct: 54  VTLDTLKQLMAQFAKERDWDRFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPDWKEEE 233

Query: 75  KEHLEEELSDVLLYLVRLADVCGLDLGQAALAKIVKNAQKYP 116
           K HL EELSDVLLYLVRL+D+CG+DLG+AAL K+  NA KYP
Sbjct: 234 KVHLGEELSDVLLYLVRLSDICGVDLGKAALRKVQLNAIKYP 359


>BG404888 
          Length = 383

 Score =  140 bits (352), Expect = 3e-34
 Identities = 72/88 (81%), Positives = 75/88 (84%), Gaps = 1/88 (1%)
 Frame = +2

Query: 6  SNGFDGARDVSLQDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVAR 65
          SNGF   RDVSLQ+LSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVA+
Sbjct: 5  SNGFPRKRDVSLQELSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVAK 184

Query: 66 GLPNWSCDDKEHLE-EELSDVLLYLVRL 92
          GLPNWS DDK  L  +    V LYLVRL
Sbjct: 185GLPNWSSDDKGALRGKTFQMVWLYLVRL 268


>TC213302 similar to GB|BAD22064.1|47848239|AP005316 XTP3-transactivated
           protein A-like {Oryza sativa (japonica cultivar-group);}
           , partial (52%)
          Length = 919

 Score =  105 bits (262), Expect(2) = 3e-32
 Identities = 50/70 (71%), Positives = 60/70 (85%)
 Frame = +3

Query: 47  VGEVGELSEIFQWKGEVARGLPNWSCDDKEHLEEELSDVLLYLVRLADVCGLDLGQAALA 106
           +GEVGELSEIFQWKGEV +GL +W  ++K HL EELSDVLLYLVRL+D+CG+DLG+AAL 
Sbjct: 417 LGEVGELSEIFQWKGEVPKGLLDWKEEEKVHLGEELSDVLLYLVRLSDMCGVDLGKAALR 596

Query: 107 KIVKNAQKYP 116
           K+  NA KYP
Sbjct: 597 KVQLNAVKYP 626



 Score = 49.3 bits (116), Expect(2) = 3e-32
 Identities = 25/49 (51%), Positives = 31/49 (63%)
 Frame = +2

Query: 5   KSNGFDGARDVSLQDLSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGEL 53
           K  G      VSL  L + + EFA+ R W+Q+HSPRNLLLALVG  G +
Sbjct: 290 KMAGVPPEAHVSLDQLKQIMDEFAKERDWEQFHSPRNLLLALVG*SGRI 436


>TC220120 similar to GB|AAP80172.1|32362289|BT009671 At1g17330 {Arabidopsis
           thaliana;} , partial (40%)
          Length = 411

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 57  FQWKGEVARGLPNWSCDDKEH 77
           F W G+  RGLP W   +++H
Sbjct: 136 FPWSGDWKRGLPLWQGREQDH 74


>TC220119 similar to GB|AAP80172.1|32362289|BT009671 At1g17330 {Arabidopsis
           thaliana;} , partial (50%)
          Length = 479

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 57  FQWKGEVARGLPNWSCDDKEH 77
           F W G+  RGLP W   +++H
Sbjct: 256 FPWSGDWKRGLPLWQGREQDH 194


>TC221709 
          Length = 505

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = -1

Query: 59  WKGEVARGLPNWSCDDKEHLEEELSDVLLYLVRLADV 95
           WK   A+  P WS   ++H++ +   V L L+ L D+
Sbjct: 247 WKQTKAKNRPEWSESVEQHIKTKKMIVKLLLLWLCDI 137


>TC217988 similar to UP|Q9SSU7 (Q9SSU7) Endo-1,4-beta-glucanase, partial
           (54%)
          Length = 1156

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 25  AEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKG 61
           AEF    GWD  H+   +LL+    V  +  +  +KG
Sbjct: 155 AEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKG 265


>TC208131 weakly similar to UP|Q6K2F0 (Q6K2F0) Heat shock protein-like,
           partial (32%)
          Length = 1371

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 56  IFQWKGEVARGLPNWSCDDKEHLEEEL 82
           IF  KGEV     NWS D  EH  +E+
Sbjct: 459 IFPGKGEVWALYRNWSPDWNEHTPDEV 539


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,320,309
Number of Sequences: 63676
Number of extensions: 63693
Number of successful extensions: 229
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of query: 146
length of database: 12,639,632
effective HSP length: 88
effective length of query: 58
effective length of database: 7,036,144
effective search space: 408096352
effective search space used: 408096352
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)