BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0086.17
(1019 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 971 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 967 0.0
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 210 2e-64
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 223 3e-58
TC232995 220 3e-57
TC213445 120 3e-47
BM143109 169 4e-42
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 169 7e-42
AI959950 166 5e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 155 1e-37
CO983516 151 1e-36
AI855982 144 3e-34
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 135 9e-32
AI966222 108 4e-29
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 125 7e-29
BU549979 125 9e-29
CO982036 124 2e-28
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 115 7e-26
BG508993 115 7e-26
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 113 5e-25
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 971 bits (2511), Expect = 0.0
Identities = 482/1008 (47%), Positives = 670/1008 (65%)
Frame = +1
Query: 1 QSWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 60
+ WYLDSGCSRHMTG + ++ V FG KGKI+G G + D P ++ VLL
Sbjct: 1678 EDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLL 1857
Query: 61 VDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 120
V GLT NL+SISQL D+G++V F + C ++ ++ S+ K+N Y E +
Sbjct: 1858 VKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSS 2037
Query: 121 VKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFTKV 180
CL S +E +WH+R GH+ +R + ++ VRG+P LK +C CQ K K+
Sbjct: 2038 T-CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKM 2214
Query: 181 HFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHA 240
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K E+
Sbjct: 2215 SHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFE 2394
Query: 241 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVER 300
VF ++Q EK C I R+RSDHG EFEN +F S GI H+FS+ TPQ NG+VER
Sbjct: 2395 VFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVER 2574
Query: 301 KNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISY 360
KNRTLQE AR ML + WAEA+NT CYI NR+++R T YE+WK KP++ +
Sbjct: 2575 KNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKH 2754
Query: 361 FHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 420
FH FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 2755 FHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL 2934
Query: 421 LDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKSRITAAHPKE 480
+ + + E NV+D K+ E AE + +E+ + + +RI HPKE
Sbjct: 2935 SPARKKDVEEDVRTSGDNVADAAKSGENAE-NSDSATDESNINQPDKRSSTRIQKMHPKE 3111
Query: 481 LILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEALQDKDWILAMEEELNQFSK 540
LI+G+ + V TRS E ++S +S IEPK++ EAL D+ WI AM+EEL QF +
Sbjct: 3112 LIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKR 3279
Query: 541 NDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVA 600
N+VW LV +P+ +VIGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAPVA
Sbjct: 3280 NEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVA 3459
Query: 601 RLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKS 660
RLE+++LL+ + L+QMDVKSAFLNGY++EEVYV QP GF D +PDHV++LKK+
Sbjct: 3460 RLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKA 3639
Query: 661 LYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQF 720
LYGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVDDI+FG +
Sbjct: 3640 LYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNE 3819
Query: 721 LCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMTELVIAK 780
+ + F + MQ+EFEMS++GEL YF+G+QV Q + ++ QS+Y K ++KKF M +
Sbjct: 3820 MLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKR 3999
Query: 781 TPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLT 840
TP L K++A V Q LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HLT
Sbjct: 4000 TPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLT 4179
Query: 841 AVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWA 900
VKRIL+Y+ G+++ G+MY S L GYCDAD+ G +RKSTSG C +LG+NL+SW
Sbjct: 4180 QVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWF 4359
Query: 901 SKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPI 960
SK+Q+ ++LSTAEAEYI A +Q++WMK L++Y + + + +YCDN +AI++SKNP+
Sbjct: 4360 SKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPV 4539
Query: 961 LHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
HSR KHI++++H+IRD V V+ LK VD + Q ADIFTK L ++F
Sbjct: 4540 QHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQF 4683
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 967 bits (2501), Expect = 0.0
Identities = 483/1010 (47%), Positives = 669/1010 (65%), Gaps = 2/1010 (0%)
Frame = +1
Query: 1 QSWYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 60
+ WYLDSGCSRHMTG + ++ V FG KGKI G G + D P ++ VLL
Sbjct: 1681 EDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLL 1860
Query: 61 VDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQN 120
V GLT NL+SISQL D+G++V F + C ++ ++ S+ K+N Y E +
Sbjct: 1861 VKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSS 2040
Query: 121 VKCLLSVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPTLKFSSDALCEACQKDKFTKV 180
CL S +E +WH+R GH+ +R + ++ VRG+P LK +C CQ K K+
Sbjct: 2041 T-CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKM 2217
Query: 181 HFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHA 240
+ +TSR LELLH+DL GP++ ES+GGKRY V+VDD+SR+TWV F+ K ++
Sbjct: 2218 SHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFE 2397
Query: 241 VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVER 300
VF ++Q EK C I R+RSDHG EFEN KF S GI H+FS+ TPQ NG+VER
Sbjct: 2398 VFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVER 2577
Query: 301 KNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISY 360
KNRTLQE AR ML + WAEA+NT CYI NR+++R T YE+WK KP + +
Sbjct: 2578 KNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKH 2757
Query: 361 FHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKTIEESIHVRFDDK 420
FH FG CY+L +++ K D KS + LGYS S+ +R +N+ +T+ ESI+V DD
Sbjct: 2758 FHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL 2937
Query: 421 LDSDQSKLVEKFADLSINVSDKGKAPEEAEPEEEEPEEEAGPSDSQSQKKS--RITAAHP 478
+ + + E NV+D K+ E AE + +E P+ +Q K+ RI HP
Sbjct: 2938 TPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDE---PNINQPDKRPSIRIQKMHP 3108
Query: 479 KELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEALQDKDWILAMEEELNQF 538
KELI+G+ + V TRS E ++S +S IEPK++ EAL D+ WI AM+EEL QF
Sbjct: 3109 KELIIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQF 3276
Query: 539 SKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 598
+N+VW LV +P+ +VIGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAP
Sbjct: 3277 KRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAP 3456
Query: 599 VARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLK 658
VARLE+++LL+ + L+QMDVKSAFLNGY++EE YV QP GF D +PDHV++LK
Sbjct: 3457 VARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLK 3636
Query: 659 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSAN 718
K+LYGLKQAPRAWYERL+ FL + + +G +D TLF K ++++I QIYVDDI+FG +
Sbjct: 3637 KALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMS 3816
Query: 719 QFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMTELVI 778
+ + F + MQ+EFEMS++GEL YF+G+QV Q + ++ QSKY K ++KKF M
Sbjct: 3817 NEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASH 3996
Query: 779 AKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETH 838
+TP L K++A V Q LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +H
Sbjct: 3997 KRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISH 4176
Query: 839 LTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVS 898
L VKRIL+Y+ G+++ G+MY S+ L GYCDAD+ G +RKSTSG C +LG+NL+S
Sbjct: 4177 LNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLIS 4356
Query: 899 WASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 958
W SK+Q+ ++LSTAEAEYI A +Q++WMK L++Y + + + +YCDN +AI++SKN
Sbjct: 4357 WFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKN 4536
Query: 959 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAEDRF 1008
P+ HSR KHI++++H+IRD V V+ L+ VD + Q ADIFTK L ++F
Sbjct: 4537 PVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQF 4686
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 210 bits (535), Expect(2) = 2e-64
Identities = 106/190 (55%), Positives = 135/190 (70%)
Frame = +3
Query: 699 KDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYI 758
K+ LI+ IYVDDIIFG+ ++ +CKEF E+M+ FE SM GELK+ +G+Q+ Q G +I
Sbjct: 477 KETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFI 656
Query: 759 HQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRP 818
HQ KYTK LK+F M E TPMH + I++K++ K Y GMI SL YLT+SRP
Sbjct: 657 HQEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRP 836
Query: 819 DILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGD 878
DI+F V LCARFQS P+ +H+TAVKRILRYL G+TN L +KK SE+ L GYCD + GD
Sbjct: 837 DIVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGD 1016
Query: 879 RTERKSTSGN 888
+ ERKSTS N
Sbjct: 1017KVERKSTSRN 1046
Score = 55.1 bits (131), Expect(2) = 2e-64
Identities = 27/47 (57%), Positives = 31/47 (65%)
Frame = +2
Query: 656 KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDI 702
K +YGLKQA RAWYERLSSFL+ N F RG D LF K K ++
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNL 487
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 223 bits (569), Expect = 3e-58
Identities = 104/153 (67%), Positives = 131/153 (84%)
Frame = -3
Query: 529 LAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQE 588
+AM+EELNQF +N+VW LV+KP++ VIGTKWVFRNKL+E G ++RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 589 GIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDE 648
GIDY ET+APVARLE +++L+++ N L+QMDVKSAFLNG I EEVYV QPPGF+
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 649 KNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 681
P HV+KL+K+LYGLKQAPRAWYER+S+FLLE
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC232995
Length = 1009
Score = 220 bits (560), Expect = 3e-57
Identities = 108/173 (62%), Positives = 131/173 (75%)
Frame = +2
Query: 639 VHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY 698
V QPPGF+ P+HV+KL+K+LYGLKQAPRAWYERLS+FLLE EF RGKVDTTLF K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 699 KDDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYI 758
+DIL+VQIYVDDIIFGS N LCKEFS MQ+EFEMSMMGELKYF+G+Q+ QT G +I
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 759 HQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLL 811
+QSKY KEL+K+F M TPM C L+K+++ + K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC213445
Length = 705
Score = 120 bits (302), Expect(2) = 3e-47
Identities = 57/98 (58%), Positives = 76/98 (77%)
Frame = +1
Query: 879 RTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI 938
+T+R+STS C F+GS LVSW SK+Q+++ LSTAEAEYI A Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 939 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 976
+IPI CDNT+AI+LSKN IL+SR KHIE+++HF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 87.4 bits (215), Expect(2) = 3e-47
Identities = 40/71 (56%), Positives = 52/71 (72%)
Frame = +2
Query: 806 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEY 865
MI S LYL+ SRP I+FSV +C R+Q++P+E+HL+ +KRI+RYL G NLGL Y K S Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 866 KLSGYCDADYV 876
L GY DA +
Sbjct: 377 NLVGYSDAKLI 409
>BM143109
Length = 415
Score = 169 bits (429), Expect = 4e-42
Identities = 84/133 (63%), Positives = 101/133 (75%)
Frame = +1
Query: 641 QPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD 700
QPP K+ + P+HVFKLKK LYGLKQA RAWYE LS FLL+ F +GKVDT LF +
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 701 DILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQ 760
DIL+VQIYVDDIIFGS N LCK+FS+ MQ EFEMSMM EL +F+G+Q+ QT G +I Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 761 SKYTKELLKKFNM 773
SKY K+L+ +F M
Sbjct: 364 SKYCKDLIHRFGM 402
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 169 bits (427), Expect = 7e-42
Identities = 89/217 (41%), Positives = 137/217 (63%), Gaps = 4/217 (1%)
Frame = +1
Query: 803 YRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYK-- 860
+R +IGSL YL SRP+I F+V L +RF PR +H+ A KR+LR +KG+ G+++
Sbjct: 22 FRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVLFPFK 201
Query: 861 -KTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPA 919
K+ + L GY D+D+ D + KST G V+ +SK+Q IALST EAEY+ A
Sbjct: 202 AKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAA 381
Query: 920 AICSTQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 978
++ + Q +WM + LE+ ++ E + + DN +AI+L+K+P LH R+KHIE+++H+IRD
Sbjct: 382 SLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQ 561
Query: 979 VQKGVLLLKFVDIDHQWADIFTKPLAEDRFNFILKNL 1015
V KG + +++ + Q AD+ TKP+ RF I L
Sbjct: 562 VSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>AI959950
Length = 466
Score = 166 bits (420), Expect = 5e-41
Identities = 84/130 (64%), Positives = 102/130 (77%)
Frame = -1
Query: 530 AMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEG 589
AM+EEL+QF KN+V LVK P+ V+G KW+F NKL+E G VVR KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 590 IDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEK 649
IDY +TFA VARLE + +L+SF+ N+ L+QMDVKSAFLNG I +EVYV QPPGF++E
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 650 NPDHVFKLKK 659
HVFKL K
Sbjct: 31 LHQHVFKLNK 2
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 155 bits (391), Expect = 1e-37
Identities = 70/111 (63%), Positives = 95/111 (85%)
Frame = +3
Query: 514 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 573
EPK+I EA+ D +WI+ M+EELNQF +N+VW LV+KP++ VIGTKWVFRNKL+E G ++
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 574 RNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDV 624
RNKARLVA+GY+Q+EGIDY ET+APVARLEA+++L++++ N L+QMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 151 bits (382), Expect = 1e-36
Identities = 71/120 (59%), Positives = 93/120 (77%)
Frame = +2
Query: 596 FAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVF 655
F PVARLE+++LL+ + L+QMDVKSAFLNGY++EEVYV QP GF D +PDHV+
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 656 KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFG 715
+LKK+LYGLKQAPRAWYERL+ L + + +G +D TLF K ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 144 bits (362), Expect = 3e-34
Identities = 75/165 (45%), Positives = 110/165 (66%)
Frame = +2
Query: 478 PKELILGNKDEPVRTRSAFRPSEETLLSLKGLMSLIEPKSIDEALQDKDWILAMEEELNQ 537
P + I+G+ + V TR + + L + +S+IEPK+I EA+ D +WI+AM+EELNQ
Sbjct: 2 PLDNIIGDISKGVTTRHSLKD----LCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQ 169
Query: 538 FSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFA 597
F +N+VW LV+KP + VI TKWVFRNKL+E ++ +KARLVA+GY+Q +G+DY T+A
Sbjct: 170 FERNNVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYA 349
Query: 598 PVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQP 642
+ARL + + +S+ N L+ SA L+G + EVYV QP
Sbjct: 350 SIARL*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 135 bits (340), Expect = 9e-32
Identities = 63/151 (41%), Positives = 97/151 (63%), Gaps = 1/151 (0%)
Frame = +2
Query: 866 KLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQ 925
+LSGYCDAD+ G +R+STSG C F+G NLVSW SK+Q+ +A S+AEAEY A+ + +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 926 MLWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 984
++W+K L++ + E + +YCDN AA+ ++ NP+ H R KHIE+ HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 985 LLKFVDIDHQWADIFTKPLAEDRFNFILKNL 1015
+ +F+ + Q DI TK L + + L
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>AI966222
Length = 430
Score = 108 bits (271), Expect(2) = 4e-29
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +1
Query: 307 EMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISYFHPFGC 366
EMART L + K+F AE +N VCY+QN+I +RPIL +T YELWK KPNISYF+PF C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 367 VCYVLNTKDRLHKFDAKSSKCLLLGYS 393
C+++NTKD L K D+KS + + YS
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYS 261
Score = 38.9 bits (89), Expect(2) = 4e-29
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 396 SKGFRFYNTDAKTIEESIHVRF-DDKLDSDQSKLVEKFADLSIN 438
SK FR YN+ IEE+IH+RF +K + + +L E FADL ++
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFADLRLD 400
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 125 bits (315), Expect = 7e-29
Identities = 61/130 (46%), Positives = 89/130 (67%)
Frame = -2
Query: 547 VKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVK 606
V P +G +WV+ K+ G+V R KARLVA+GY+Q GIDY +TF+PVA+L V+
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 607 LLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQ 666
L ++ + + LHQ+D+K+AFL+G + E++Y+ QPPGF + V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 667 APRAWYERLS 676
+PRAW+ + S
Sbjct: 46 SPRAWFGKFS 17
>BU549979
Length = 615
Score = 125 bits (314), Expect = 9e-29
Identities = 63/183 (34%), Positives = 111/183 (60%), Gaps = 3/183 (1%)
Frame = -1
Query: 829 RFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGN 888
R+QS+P H K+++RYL+G+ + LMYK+T+ ++ GY D+D+ G R+STSG
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 889 C*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILES---NIPI 945
L +VSW S +Q+ IA ST E E++P ++ +W+K + ++++S + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 946 YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAE 1005
YCDN AA+ ++KN +R+KHI++KY IR+ V++ ++++ V+ + D TK +
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTP 67
Query: 1006 DRF 1008
F
Sbjct: 66 KNF 58
>CO982036
Length = 674
Score = 124 bits (311), Expect = 2e-28
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 5/212 (2%)
Frame = -2
Query: 698 YKDDILIVQ--IYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEG 755
YK IL V +YVD II GS+ L + + + + F + ++G+L YF+ I+V P+
Sbjct: 673 YKTHILTVYLLVYVDIIITGSSCT-LIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 756 TYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTA 815
+ ++ + +K I+ +PM TC L K D+ YR ++G+L Y T
Sbjct: 496 LFSLRTSIFEIFCRKPR*QAQPIS-SPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 816 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYK---KTSEYKLSGYCD 872
RP+I F+V+ +F S+P ++H T VKRILRYLKGS + GL K + + G+CD
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 873 ADYVGDRTERKSTSGNC*FLGSNLVSWASKRQ 904
AD+ +++STSG FLG NL+SW +Q
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 115 bits (289), Expect = 7e-26
Identities = 55/131 (41%), Positives = 86/131 (64%), Gaps = 1/131 (0%)
Frame = +3
Query: 879 RTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQI 938
R +RKST+G F+G +W SK+Q + LST EAEY+ A C +W+++ L++ ++
Sbjct: 6 RDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKM 185
Query: 939 -LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWAD 997
E + I DN +A++L+KNP+ H ++KHI+ +YHFIR+ ++K + LK+V Q AD
Sbjct: 186 PQEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAAD 365
Query: 998 IFTKPLAEDRF 1008
IFTKPL + F
Sbjct: 366 IFTKPLKLETF 398
>BG508993
Length = 374
Score = 115 bits (289), Expect = 7e-26
Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Frame = +1
Query: 850 KGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIAL 909
KG+ + GL Y ++ YKL G+CD+D+ GD +RKST+G F+G + +W+SK+Q + L
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 910 STAEAEYIPAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHI 968
T EAEY+ A C+ +W++ LE+ Q+L+ + IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 969 EVK 971
+ +
Sbjct: 364 DTR 372
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 113 bits (282), Expect = 5e-25
Identities = 56/134 (41%), Positives = 81/134 (59%)
Frame = +3
Query: 509 LMSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNE 568
L SL P +I EAL W AM +E+ N W LV P +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 569 KGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAF 628
G V R KARLVA+GY+Q GI+Y +TF+PV L V+L ++ + + LHQ+D+K+AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 629 LNGYISEEVYVHQP 642
L+G + E++Y+ QP
Sbjct: 363 LHGDLEEDIYMEQP 404
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,273,182
Number of Sequences: 63676
Number of extensions: 594164
Number of successful extensions: 3252
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 2977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3084
length of query: 1019
length of database: 12,639,632
effective HSP length: 107
effective length of query: 912
effective length of database: 5,826,300
effective search space: 5313585600
effective search space used: 5313585600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0086.17