Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0082b.2
         (153 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM567913                                                              202  7e-53
TC231444                                                              167  2e-42
BE473761 weakly similar to GP|27450574|gb| pollen-specific calmo...   151  1e-37
TC212512                                                              126  5e-30
BQ454144 weakly similar to GP|9802536|gb| F17L21.25 {Arabidopsis...   101  1e-22
TC210367 similar to UP|Q8GZN1 (Q8GZN1) Pollen-specific calmoduli...    91  2e-19
AW308911 similar to GP|19913115|em SPY protein {Lycopersicon esc...    45  1e-05
TC205633 similar to UP|O81280 (O81280) Peroxisomal targeting sig...    33  0.053
BQ299342 similar to GP|18139887|gb O-linked N-acetyl glucosamine...    33  0.070
TC207489 weakly similar to UP|Q94AA8 (Q94AA8) AT5g63200/MDC12_17...    30  0.45
TC233771                                                               30  0.59
TC205632 similar to UP|O82444 (O82444) Peroxisomal targeting seq...    29  1.0
TC230777 similar to GB|BAB08884.1|9758397|AB022212 signal recogn...    28  1.3
TC205470                                                               28  1.3
TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-bindi...    28  1.3
TC210267 similar to UP|Q8LGU6 (Q8LGU6) HOBBIT protein, partial (...    27  2.9
TC231862 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-a...    27  2.9
TC215378 similar to UP|Q94EJ1 (Q94EJ1) At1g22700/T22J18_13, part...    27  2.9
TC218992 similar to UP|OM20_SOLTU (P92792) Mitochondrial import ...    27  3.8
TC220549 similar to UP|EOL1_ARATH (Q9ZQX6) ETO1-like protein 1 (...    27  3.8

>BM567913 
          Length = 430

 Score =  202 bits (513), Expect = 7e-53
 Identities = 95/120 (79%), Positives = 107/120 (89%)
 Frame = +2

Query: 1   DYRDYARNLEEEIWHDLAYAYISLSQWHDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGL 60
           DY D+AR++E EIWHDLA+ YISLS+WHDAEVCLSKSKA + Y+ASRCH IGTMHEAKGL
Sbjct: 71  DYIDHARSMEVEIWHDLAFVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMHEAKGL 250

Query: 61  YKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNASAWYN 120
           YKEA+KAFRDALNIDP HVPSLIS AV LR  SN+S+P +RSFLMDALR+DR NASAWYN
Sbjct: 251 YKEALKAFRDALNIDPGHVPSLISAAVVLRWCSNRSNPAIRSFLMDALRHDRFNASAWYN 430


>TC231444 
          Length = 966

 Score =  167 bits (422), Expect = 2e-42
 Identities = 79/102 (77%), Positives = 91/102 (88%)
 Frame = +1

Query: 52  GTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYD 111
           GTM+EAKGLYKEA+KAFRDAL+IDP HVPSLISTAV LRR SNQS+P +RSFLMDALR+D
Sbjct: 463 GTMYEAKGLYKEAIKAFRDALSIDPGHVPSLISTAVVLRRCSNQSNPAIRSFLMDALRHD 642

Query: 112 RLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETAPIEPF 153
           R NASAWYNLGI +K EG +LEA +CF+ AN LEE+AP+EPF
Sbjct: 643 RFNASAWYNLGIFNKDEGTILEAADCFETANFLEESAPVEPF 768


>BE473761 weakly similar to GP|27450574|gb| pollen-specific
           calmodulin-binding protein {Arabidopsis thaliana},
           partial (6%)
          Length = 463

 Score =  151 bits (381), Expect = 1e-37
 Identities = 72/96 (75%), Positives = 82/96 (85%)
 Frame = +3

Query: 3   RDYARNLEEEIWHDLAYAYISLSQWHDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGLYK 62
           RD ARNLE EIWHD+AY YISL QWHDAEVCLSKSKA +  +ASRCH IG M+EAKG YK
Sbjct: 174 RDRARNLEVEIWHDIAYVYISLLQWHDAEVCLSKSKAIKPLSASRCHAIGIMYEAKGHYK 353

Query: 63  EAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDP 98
           EA+KAF DAL++DP HVPSLISTAV L+R SN+S+P
Sbjct: 354 EALKAFGDALDVDPGHVPSLISTAVVLKRCSNKSNP 461


>TC212512 
          Length = 1090

 Score =  126 bits (316), Expect = 5e-30
 Identities = 63/104 (60%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
 Frame = +2

Query: 52  GTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYD 111
           G + EA+G ++EA+K+FR AL+I+P HVPSLISTA  LR+   QS  +VRS L DALR D
Sbjct: 623 GLLSEARGFHQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLD 802

Query: 112 RLNASAWYNLGILHKAE--GRVLEAVECFQAANSLEETAPIEPF 153
           R N SAWYNLG+L+KA+     +EAVECF+AA  LEE++PIEPF
Sbjct: 803 RTNPSAWYNLGLLYKADLGTSAMEAVECFEAAALLEESSPIEPF 934


>BQ454144 weakly similar to GP|9802536|gb| F17L21.25 {Arabidopsis thaliana},
           partial (15%)
          Length = 424

 Score =  101 bits (252), Expect = 1e-22
 Identities = 49/118 (41%), Positives = 77/118 (64%)
 Frame = +1

Query: 36  KSKAFRQYTASRCHVIGTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQ 95
           KS++   ++    H+ G + EA+ L+KEA  +F  +L+I+P ++P +ISTA    +    
Sbjct: 1   KSQSIEFFSPRSWHITGLLFEAQSLHKEAFVSFSVSLSIEPDYIPCIISTAKLFLKLGIP 180

Query: 96  SDPVVRSFLMDALRYDRLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETAPIEPF 153
           S P+ RSFLM+ALR D  N  AW+NLG++ K EG + +A +CFQAA  L+ +AP++ F
Sbjct: 181 SLPIARSFLMNALRLDPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKF 354


>TC210367 similar to UP|Q8GZN1 (Q8GZN1) Pollen-specific calmodulin-binding
           protein, partial (8%)
          Length = 610

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 44/102 (43%), Positives = 65/102 (63%)
 Frame = +3

Query: 52  GTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYD 111
           G + E +G  +EA+ A  +A+ ++P +VP  I     +++   +   + RS L DALR +
Sbjct: 18  GVLFEGRGQNEEALCATINAILLEPNYVPCKILMGALIQKLGTKHLAIARSLLSDALRIE 197

Query: 112 RLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETAPIEPF 153
             N  AWYNLG+LHK EGR+ +A +CFQAA+ LEE+ PIE F
Sbjct: 198 PTNRKAWYNLGLLHKHEGRISDAADCFQAASMLEESDPIESF 323


>AW308911 similar to GP|19913115|em SPY protein {Lycopersicon esculentum},
           partial (15%)
          Length = 444

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 28/85 (32%), Positives = 46/85 (53%)
 Frame = +1

Query: 57  AKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNAS 116
           ++  + +A+  +   L  D  +V +LI   + L+   N+      SF  +A++ D  NA 
Sbjct: 7   SRNKFVDALAIYERVLESDGANVEALIGKGICLQM-QNKGRLAYESF-SEAIKVDPQNAC 180

Query: 117 AWYNLGILHKAEGRVLEAVECFQAA 141
           A  + GILHK EGR++EA E +Q A
Sbjct: 181 ALTHCGILHKDEGRLVEAAESYQKA 255



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 23/81 (28%), Positives = 43/81 (52%), Gaps = 7/81 (8%)
 Frame = +1

Query: 52  GTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVAL-------RRWSNQSDPVVRSFL 104
           G +H+ +G   EA ++++ AL +DP +  +    A+ L       +   N  D + + F 
Sbjct: 196 GILHKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYF- 372

Query: 105 MDALRYDRLNASAWYNLGILH 125
            +AL+ D   A A+YNLG+++
Sbjct: 373 -EALKVDPHYAPAYYNLGVVY 432


>TC205633 similar to UP|O81280 (O81280) Peroxisomal targeting signal-1
            receptor, partial (64%)
          Length = 1643

 Score = 33.1 bits (74), Expect = 0.053
 Identities = 26/99 (26%), Positives = 46/99 (46%)
 Frame = +1

Query: 50   VIGTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALR 109
            V+G M+     Y +A+ +F  AL + P+   SL +   A +  S QS   + ++   AL 
Sbjct: 937  VLGVMYNLSREYDKAIASFERALKLKPQDY-SLWNKLGATQANSVQSADAIMAY-QQALD 1110

Query: 110  YDRLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETA 148
                   AW N+GI +  +G   E++  +  A ++   A
Sbjct: 1111 LKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKA 1227


>BQ299342 similar to GP|18139887|gb O-linked N-acetyl glucosamine transferase
           {Arabidopsis thaliana}, partial (14%)
          Length = 421

 Score = 32.7 bits (73), Expect = 0.070
 Identities = 29/138 (21%), Positives = 49/138 (35%)
 Frame = +3

Query: 12  EIWHDLAYAYISLSQWHDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGLYKEAVKAFRDA 71
           + W +LA AY+   +  +A  C  ++ A           +G + +A+GL +EA   + +A
Sbjct: 48  DAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEA 227

Query: 72  LNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNASAWYNLGILHKAEGRV 131
           L I P                                      A AW NL  L    G  
Sbjct: 228 LRIQPTF------------------------------------AIAWSNLAGLFMESGDF 299

Query: 132 LEAVECFQAANSLEETAP 149
             A++ ++ A  L+ + P
Sbjct: 300 NRALQYYKEAVKLKPSFP 353


>TC207489 weakly similar to UP|Q94AA8 (Q94AA8) AT5g63200/MDC12_17, partial
           (40%)
          Length = 800

 Score = 30.0 bits (66), Expect = 0.45
 Identities = 25/128 (19%), Positives = 52/128 (40%)
 Frame = +1

Query: 14  WHDLAYAYISLSQWHDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGLYKEAVKAFRDALN 73
           WH L    +   Q+  ++  L  + A  +  +     +G   +      +A + ++ AL+
Sbjct: 151 WHQLGIHSLCARQFKTSQKYLKAAVACDKDCSYAWATLGVSLQLSEEPSQAEEVYKQALS 330

Query: 74  IDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNASAWYNLGILHKAEGRVLE 133
           +       +I + + +     +     ++    +L      A A+ NLG++  AEG + E
Sbjct: 331 LATTKQAHVILSNLGILYRHQKQYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEE 510

Query: 134 AVECFQAA 141
           A  CF  A
Sbjct: 511 AKYCFDKA 534


>TC233771 
          Length = 390

 Score = 29.6 bits (65), Expect = 0.59
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 56 EAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDP 98
          E +G+  + +  F+ A N+DP +  +L++  ++   W N+  P
Sbjct: 17 ELQGIAMKRISMFKFAGNLDPTYQKTLVNAMISFFEWYNKLHP 145


>TC205632 similar to UP|O82444 (O82444) Peroxisomal targeting sequence 1
           receptor (Fragment), partial (24%)
          Length = 707

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 26/97 (26%), Positives = 42/97 (42%)
 Frame = +2

Query: 52  GTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYD 111
           G M+     Y  A  +F  AL + P+   SL +   A +  S QS   + ++   AL   
Sbjct: 2   GVMYXXSREYDXAXXSFERALKLKPQDY-SLWNKLGATQANSVQSADAIMAY-QQALDLK 175

Query: 112 RLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETA 148
                AW N+GI +  +G   E+V  +  A ++   A
Sbjct: 176 PNYVRAWANMGISYANQGMYDESVRYYVRALAMNPKA 286


>TC230777 similar to GB|BAB08884.1|9758397|AB022212 signal recognition
           particle 68kD protein-like {Arabidopsis thaliana;} ,
           partial (47%)
          Length = 1077

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 21/47 (44%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +1

Query: 30  AEVCLSKSKAFRQ----YTASRCHVIGTMHEAKGLYKEAVKAFRDAL 72
           AEVC  KS AFR     Y A    V G   EA  LY  A     DAL
Sbjct: 409 AEVCSCKSLAFRAQRCFYVAKSYSVAGKRAEAYALYCRARNLADDAL 549


>TC205470 
          Length = 580

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 18/79 (22%), Positives = 36/79 (44%), Gaps = 4/79 (5%)
 Frame = +2

Query: 51  IGTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRY 110
           I  + +  G  K  +K   DA+  + R V  + S  + ++ W++    ++ S L   +  
Sbjct: 20  INWLRKMSGKRKRKLKLLSDAITDNRRTVAEVKSENLEMQSWADLPAELLESILSRLILA 199

Query: 111 DRLNASA----WYNLGILH 125
           D + ASA    W+++   H
Sbjct: 200 DNIRASAVCRRWHSVASDH 256


>TC230936 weakly similar to UP|Q9AWT3 (Q9AWT3) Nucleoid DNA-binding protein
           cnd41-like protein, partial (54%)
          Length = 985

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 67  AFRDALNIDPRHVPSLISTAVALRRWSNQSD-PVVRSFLMDALRYDRLNASAWYNLGI-L 124
           AF     +DP HV S +   V L RW + SD   V +  +   R +R        LG+ L
Sbjct: 339 AFGARRALDPAHVASRVENHVGLTRWLSDSDSEEVLAASLTRSRDNRALQRVGLELGL*L 160

Query: 125 HKAEGRVLEAVE 136
            + E RV +A +
Sbjct: 159 GRVEVRVRDAFQ 124


>TC210267 similar to UP|Q8LGU6 (Q8LGU6) HOBBIT protein, partial (39%)
          Length = 1273

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 20/78 (25%), Positives = 40/78 (50%), Gaps = 3/78 (3%)
 Frame = +3

Query: 51  IGTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTA---VALRRWSNQSDPVVRSFLMDA 107
           +G  +  +  ++ A+K F+ A+ ++PR   +        VAL  + N     ++ +   A
Sbjct: 219 MGNCYSLQKDHETALKNFQRAVQLNPRFAYAHTLCGHEYVALEDFENG----IKCY-QSA 383

Query: 108 LRYDRLNASAWYNLGILH 125
           LR D  + +AWY LG+++
Sbjct: 384 LRVDARHYNAWYGLGMVY 437


>TC231862 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
           glucosamine transferase {Arabidopsis thaliana;} ,
           partial (25%)
          Length = 750

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 117 AWYNLGILHKAEGRVLEAVECFQAANSLEETAP 149
           A+ NLG   K  GRV EA++C+    +L+   P
Sbjct: 87  AYNNLGNALKDVGRVEEAIQCYNQCLTLQPNHP 185


>TC215378 similar to UP|Q94EJ1 (Q94EJ1) At1g22700/T22J18_13, partial (55%)
          Length = 807

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = +3

Query: 51  IGTMHEAKGLYKEAVKAFRDALNIDPRH 78
           +G   E+K  YK A+KAF + L  DP +
Sbjct: 357 LGDAFESKKDYKSALKAFEEVLLFDPNN 440


>TC218992 similar to UP|OM20_SOLTU (P92792) Mitochondrial import receptor
          subunit TOM20 (Translocase of outer membrane 20 kDa
          subunit), partial (59%)
          Length = 561

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 15/51 (29%), Positives = 25/51 (48%)
 Frame = +3

Query: 28 HDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGLYKEAVKAFRDALNIDPRH 78
          HD   CL  +  F  +      +I  + EAKG + +A++ F+ A   DP +
Sbjct: 45 HDTLWCLGNANTFYAF------LIPDITEAKGYFDKALEYFQKAAEEDPEN 179


>TC220549 similar to UP|EOL1_ARATH (Q9ZQX6) ETO1-like protein 1 (Ethylene
           overproducer 1-like protein 1), partial (26%)
          Length = 876

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 16/45 (35%), Positives = 24/45 (52%)
 Frame = +3

Query: 34  LSKSKAFRQYTASRCHVIGTMHEAKGLYKEAVKAFRDALNIDPRH 78
           LS++ AF+       H+    HE KG    A++  R AL++DP H
Sbjct: 510 LSRAIAFKA-DLHLLHLRAAFHEHKGDVLGAIRDCRAALSVDPFH 641


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,709,797
Number of Sequences: 63676
Number of extensions: 77627
Number of successful extensions: 397
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of query: 153
length of database: 12,639,632
effective HSP length: 89
effective length of query: 64
effective length of database: 6,972,468
effective search space: 446237952
effective search space used: 446237952
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)


Lotus: description of TM0082b.2