BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0082b.1
(122 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207605 similar to UP|Q9SD81 (Q9SD81) Glycerophosphodiester pho... 40 1e-04
TC230123 28 0.59
TC226767 similar to GB|AAP68328.1|31711944|BT008889 At1g18070 {A... 26 2.2
TC208943 weakly similar to UP|DR30_ARATH (Q9LZ25) Probable disea... 26 2.9
TC215035 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MS... 25 5.0
BU762711 25 5.0
BM527603 similar to GP|10946337|gb| CONSTANS-like protein {Ipomo... 24 8.5
TC220759 weakly similar to UP|Q8MKN1 (Q8MKN1) CG30495-PA, partia... 24 8.5
TC215033 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MS... 24 8.5
AI856779 24 8.5
BG238104 similar to GP|11994336|dbj cytochrome c oxidase subunit... 24 8.5
TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 24 8.5
>TC207605 similar to UP|Q9SD81 (Q9SD81) Glycerophosphodiester
phosphodiesterase-like protein, partial (88%)
Length = 1371
Score = 40.4 bits (93), Expect = 1e-04
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Frame = +1
Query: 17 IGIYPEIKAPWFHKQ-----EGKDISSKVLAVLKQYGYTGK-------NDNVYLQCFDAN 64
+GIYPEIK P F Q GK K + L++YGY G V++Q F
Sbjct: 592 VGIYPEIKNPVFINQHVKWSHGKRFEDKFVETLQKYGYKGSYLSKDWLRQPVFIQSFAPT 771
Query: 65 ELKRIKNELE-PKLGMDLKLVQLIAYNDWQETYEQKADGKWVEYDYDWMFKPGAMK 119
L I N+ + PK+ + + + D ++Y + +++EY ++ G K
Sbjct: 772 SLVYISNKTDLPKVFLIDDVT--VPTQDTNQSYWEITSDEYLEYIKQYVVGIGPWK 933
>TC230123
Length = 883
Score = 28.1 bits (61), Expect = 0.59
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +2
Query: 1 EEIEFVQGLNHSTGKN-IGIYPEIKAPWFHKQEGKD------ISSKVLAVLKQYGYTGKN 53
++ E + + H+ N I I P IK W K D I+S +L +KQY +
Sbjct: 392 DDQEIEKNIAHNCRANEIPIVPHIKHTWGDKFPNSDPDWDLIIASDILLYVKQYANLIQT 571
Query: 54 DNVYLQCFDANELKRI 69
+ L C+ E + +
Sbjct: 572 ISFLLNCYKPQERRAV 619
>TC226767 similar to GB|AAP68328.1|31711944|BT008889 At1g18070 {Arabidopsis
thaliana;} , partial (80%)
Length = 2011
Score = 26.2 bits (56), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +2
Query: 30 KQEGKDISSKVLAVLKQYGYTGKNDNVYL 58
K+ +I SK++ LKQ GY K D ++L
Sbjct: 716 KERYDEIESKMVPFLKQSGYNVKKDVLFL 802
>TC208943 weakly similar to UP|DR30_ARATH (Q9LZ25) Probable disease resistance
protein At5g04720, partial (38%)
Length = 1320
Score = 25.8 bits (55), Expect = 2.9
Identities = 13/41 (31%), Positives = 19/41 (45%), Gaps = 2/41 (4%)
Frame = -3
Query: 67 KRIKNELE--PKLGMDLKLVQLIAYNDWQETYEQKADGKWV 105
+RI +L G +KL QL+ W + Q +G WV
Sbjct: 1189 RRISRDLSFPSSTGNSVKLWQLVRLKFWSDFIPQMLEGSWV 1067
>TC215035 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MSJ11_4
{Arabidopsis thaliana;} , partial (59%)
Length = 753
Score = 25.0 bits (53), Expect = 5.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 75 PKLGMDLKLVQLIAYNDWQETYEQKADGK 103
P L + L L+ L+A ++W + + DG+
Sbjct: 226 PSLKISLNLLTLVAGSNWHDIFNPPFDGR 140
>BU762711
Length = 428
Score = 25.0 bits (53), Expect = 5.0
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +1
Query: 2 EIEFVQGLNHSTGKNIGIYPEIKAPWFHKQEGKDISSKVLAVLKQYGYTGKNDNVYLQCF 61
EI V GL HS+ K +YP + K + ++ V+ G N N F
Sbjct: 85 EIGHVLGLGHSSVKEAVMYPSL------SPRRKKVDLRIDDVVGVQALYGSNPN-----F 231
Query: 62 DANELKRIKNELEPKLGMD 80
+ L + +N L +G++
Sbjct: 232 TFSSLLQSQNSLNAAVGLE 288
>BM527603 similar to GP|10946337|gb| CONSTANS-like protein {Ipomoea nil},
partial (9%)
Length = 427
Score = 24.3 bits (51), Expect = 8.5
Identities = 7/22 (31%), Positives = 14/22 (62%)
Frame = -2
Query: 91 DWQETYEQKADGKWVEYDYDWM 112
+W++ E + KW+ D++WM
Sbjct: 417 EWRQLREWRKRWKWLLVDWNWM 352
>TC220759 weakly similar to UP|Q8MKN1 (Q8MKN1) CG30495-PA, partial (30%)
Length = 1113
Score = 24.3 bits (51), Expect = 8.5
Identities = 13/40 (32%), Positives = 18/40 (44%)
Frame = +1
Query: 82 KLVQLIAYNDWQETYEQKADGKWVEYDYDWMFKPGAMKKI 121
K VQ+ W ETY+ K G + + W PG K +
Sbjct: 670 KRVQVALTEKWAETYKNKGIGFYSMHP-GWAETPGVAKSM 786
>TC215033 similar to GB|AAL05900.1|15777879|AY055100 AT3g15640/MSJ11_4
{Arabidopsis thaliana;} , partial (60%)
Length = 923
Score = 24.3 bits (51), Expect = 8.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 75 PKLGMDLKLVQLIAYNDW 92
P L + LKL+ L+A +DW
Sbjct: 418 PSLELSLKLLALVASSDW 365
>AI856779
Length = 486
Score = 24.3 bits (51), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 3 IEFVQGLNHSTGKNIGIY 20
I+ + GLNHS N GIY
Sbjct: 289 IQRLDGLNHSVHNNSGIY 236
>BG238104 similar to GP|11994336|dbj cytochrome c oxidase subunit Vb
precursor-like protein {Arabidopsis thaliana}, partial
(40%)
Length = 476
Score = 24.3 bits (51), Expect = 8.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 75 PKLGMDLKLVQLIAYNDW 92
P L + LKL+ L+A +DW
Sbjct: 377 PSLELSLKLLALVASSDW 324
>TC204285 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (32%)
Length = 1539
Score = 24.3 bits (51), Expect = 8.5
Identities = 7/22 (31%), Positives = 14/22 (62%)
Frame = -1
Query: 91 DWQETYEQKADGKWVEYDYDWM 112
+W++ E + KW+ D++WM
Sbjct: 1017 EWRQLREWRKRWKWLLVDWNWM 952
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,166,337
Number of Sequences: 63676
Number of extensions: 56202
Number of successful extensions: 190
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of query: 122
length of database: 12,639,632
effective HSP length: 98
effective length of query: 24
effective length of database: 6,399,384
effective search space: 153585216
effective search space used: 153585216
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0082b.1