BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0082a.8
(876 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222746 179 6e-45
BG508806 142 6e-34
TC221560 99 1e-20
CO036587 64 3e-10
TC203391 similar to GB|AAL24204.1|16604396|AY058096 AT5g18630/T1... 55 1e-07
TC204730 similar to UP|Q8LQF0 (Q8LQF0) OJ1529_G03.6 protein, par... 54 2e-07
TC228905 weakly similar to UP|Q7XIV3 (Q7XIV3) Zinc finger and C2... 50 3e-06
TC227978 similar to GB|CAE85115.1|39918793|AJ617630 synaptotagmi... 50 3e-06
TC225554 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {A... 50 6e-06
TC229042 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein... 46 6e-05
TC223356 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {A... 44 2e-04
TC216401 weakly similar to UP|Q9LP65 (Q9LP65) T1N15.21, partial ... 44 3e-04
BI892610 44 4e-04
TC207922 similar to UP|O23522 (O23522) Triacylglycerol lipase li... 44 4e-04
TC228761 similar to GB|AAP68261.1|31711810|BT008822 At4g21160 {A... 42 9e-04
TC208127 weakly similar to UP|Q93ZM0 (Q93ZM0) AT3g18370/MYF24_8,... 41 0.003
TC233960 similar to UP|OPSD_SEPOF (O16005) Rhodopsin, partial (10%) 38 0.022
AW596616 37 0.049
BM093650 similar to GP|15408808|dbj P0492G09.26 {Oryza sativa (j... 36 0.084
TC207760 weakly similar to UP|Q93ZM0 (Q93ZM0) AT3g18370/MYF24_8,... 36 0.084
>TC222746
Length = 422
Score = 179 bits (453), Expect = 6e-45
Identities = 93/120 (77%), Positives = 102/120 (84%), Gaps = 2/120 (1%)
Frame = +3
Query: 467 IEEDSAKVGGNDIQCLPK--IPSSENGSVLDDKKAEEMRELFSTAETAMEAWAMLATSLG 524
I+EDSAK GNDIQ PSS+NG VLDDKK EEM+ELFSTAE+AMEAWAMLATSL
Sbjct: 6 IKEDSAKARGNDIQYSTSQMFPSSQNGLVLDDKKTEEMKELFSTAESAMEAWAMLATSLR 185
Query: 525 HASFIKSEFEKICFLDNAPTDTQVAIWRDSMRRRLVVAFRGTEQSQWKDLITDLMIVPAG 584
+FIKSEFEK+CFLDNA TDTQVAI RDS RR+LVVAFRGTEQ+QWKDL TDLM+VPAG
Sbjct: 186 QPNFIKSEFEKLCFLDNASTDTQVAIRRDSARRKLVVAFRGTEQTQWKDLRTDLMLVPAG 365
>BG508806
Length = 412
Score = 142 bits (358), Expect = 6e-34
Identities = 69/75 (92%), Positives = 74/75 (98%)
Frame = +2
Query: 797 VLRNSLENKDILGDGYEGDVLGESTPDVIVSEFMKGEKELIEKLLQTEINIFRSIRDGTA 856
VLR++LENKDILGDGYEGDVLGESTPDVIVSEF+KGEKELIEKLLQTEINIFRSIRDG+A
Sbjct: 2 VLRHALENKDILGDGYEGDVLGESTPDVIVSEFLKGEKELIEKLLQTEINIFRSIRDGSA 181
Query: 857 FMQHMEDFYYVTLLE 871
MQHMEDFYY+TLLE
Sbjct: 182 LMQHMEDFYYITLLE 226
>TC221560
Length = 514
Score = 98.6 bits (244), Expect = 1e-20
Identities = 47/51 (92%), Positives = 50/51 (97%)
Frame = +1
Query: 821 TPDVIVSEFMKGEKELIEKLLQTEINIFRSIRDGTAFMQHMEDFYYVTLLE 871
TPDVIVSEF+KGEKELIEKLLQTEINIFRSIRDG+A MQHMEDFYY+TLLE
Sbjct: 1 TPDVIVSEFLKGEKELIEKLLQTEINIFRSIRDGSALMQHMEDFYYITLLE 153
>CO036587
Length = 137
Score = 63.9 bits (154), Expect = 3e-10
Identities = 28/45 (62%), Positives = 36/45 (79%)
Frame = +2
Query: 331 EPSTQTSGEELSNQLFWRDFTNVINVNVVQKLGLTVPGKFKWDGL 375
E ++ S EELSNQ+FWR+F NVIN ++ +KLGL+VP KFKW GL
Sbjct: 2 ESLSKVSEEELSNQIFWRNFANVINSSIARKLGLSVPEKFKWXGL 136
>TC203391 similar to GB|AAL24204.1|16604396|AY058096 AT5g18630/T1A4_10
{Arabidopsis thaliana;} , partial (64%)
Length = 1497
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/156 (27%), Positives = 63/156 (39%), Gaps = 2/156 (1%)
Frame = +1
Query: 626 EVQVHSGFLSAYDS--VRTRIISLIRLAIGYVDDHFEPLHKWHIYVTGHSLGGALATLLA 683
+ VH GF +AY + +R I+ + A + D I TGHS+GGA+A+
Sbjct: 562 DAMVHRGFYTAYHNTTIRPAILDAVERAKKFYGDI-------EIIATGHSMGGAMASFCG 720
Query: 684 LELSSNQLTNMVDYVEEPKTHHIRQIMIANYGRISAMALSCPIFDNNAHLRGAISITMYN 743
L+L+ NQ V Q+M
Sbjct: 721 LDLTVNQNEKNV------------QVM--------------------------------T 768
Query: 744 FGSPRVGNKRFAEVYNEKIKDSWRVVNHRDIIPTVP 779
FG PRVGN FA +Y + + ++ RV N DI+P +P
Sbjct: 769 FGQPRVGNAAFASLYTKLVPNTIRVTNDHDIVPHLP 876
>TC204730 similar to UP|Q8LQF0 (Q8LQF0) OJ1529_G03.6 protein, partial (97%)
Length = 2084
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/115 (26%), Positives = 55/115 (46%), Gaps = 12/115 (10%)
Frame = +1
Query: 105 GTSDPYVVFQMDSQTV---KSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAP 161
G SDPYV ++ + + K+ +K+ P WNEEF +K P ++ L++ +D +
Sbjct: 1036 GASDPYVKLKLTEEKLPSKKTTVKYKNLNPEWNEEFNIVVKDPESQVLELTVYDWEQIGK 1215
Query: 162 HKRMGNAGVDLEWLCDGDVHEILVEL---------EGMGGGGKVQLEVKYKTFDE 207
H +MG + L+ + + + + L E G++ +EV YK F E
Sbjct: 1216 HDKMGMNVIPLKEITPDEPKAVTLNLLKTMDPNDPENAKSRGQLTVEVLYKPFKE 1380
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/104 (21%), Positives = 50/104 (47%), Gaps = 6/104 (5%)
Frame = +1
Query: 107 SDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNK-----PLQVAAWDANLVAP 161
++PYV + K+ ++P W E F F ++ PP +Q A+ L+ P
Sbjct: 1507 TNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLYVEVQSASSKLGLLHP 1686
Query: 162 HKRMGNAGVDL-EWLCDGDVHEILVELEGMGGGGKVQLEVKYKT 204
+ +G + L + + + ++E ++ G++Q+E++++T
Sbjct: 1687 KESLGYVDIKLSDVVTNKRINEKYHLIDSR--NGRIQIELQWRT 1812
>TC228905 weakly similar to UP|Q7XIV3 (Q7XIV3) Zinc finger and C2 domain
protein-like, partial (85%)
Length = 819
Score = 50.4 bits (119), Expect = 3e-06
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +3
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
TSDPYVV M Q +K+ + P WNEE T ++K P+ + +D + + +M
Sbjct: 114 TSDPYVVVNMGDQKLKTRVVKNNCNPDWNEELTLSVK-DVKTPIHLTVYDKDTFSVDDKM 290
Query: 166 GNAGVDLE 173
G A +DL+
Sbjct: 291 GEAEIDLK 314
>TC227978 similar to GB|CAE85115.1|39918793|AJ617630 synaptotagmin
{Arabidopsis thaliana;} , partial (72%)
Length = 1470
Score = 50.4 bits (119), Expect = 3e-06
Identities = 30/117 (25%), Positives = 54/117 (45%), Gaps = 12/117 (10%)
Frame = +2
Query: 105 GTSDPYVVFQMDSQ---TVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAP 161
G SDPYV ++ + K+ +K P WNEEF +K P ++ +++ +D V
Sbjct: 434 GASDPYVKLKLTEDKWPSKKTTVKHKNLNPQWNEEFNIVVKDPDSQVIEINVYDWEQVGK 613
Query: 162 HKRMGNAGVDLEWLCDGDVHEILVEL---------EGMGGGGKVQLEVKYKTFDEID 209
H +MG + L+ + + ++L + G++ +E+ YK F E D
Sbjct: 614 HDKMGMNVIPLKEVSPEETKRFTLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEED 784
>TC225554 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {Arabidopsis
thaliana;} , partial (95%)
Length = 1383
Score = 49.7 bits (117), Expect = 6e-06
Identities = 25/68 (36%), Positives = 39/68 (56%)
Frame = +3
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
TSDPYVV ++ +QT K+ + P WNEE F + P L + +D +L+ +M
Sbjct: 357 TSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTL-TEPLGVLNLEVFDKDLLKADDKM 533
Query: 166 GNAGVDLE 173
GNA ++L+
Sbjct: 534 GNAFLNLQ 557
>TC229042 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-like,
partial (95%)
Length = 783
Score = 46.2 bits (108), Expect = 6e-05
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +3
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
+SDPYVV +M +Q +K+ + P WNE+ T ++ + PN +++ +D + + +M
Sbjct: 90 SSDPYVVIKMYNQKLKTRVIKKDVNPEWNEDLTLSV-INPNHKIKLTVYDHDTFSKDDKM 266
Query: 166 GNAGVDL 172
G+A D+
Sbjct: 267 GDAEFDI 287
>TC223356 similar to GB|AAO44032.1|28466847|BT004766 At5g47710 {Arabidopsis
thaliana;} , partial (96%)
Length = 705
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +3
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
+SDPYVV ++ +QT K+ + P WNEE F + P L + +D +L +M
Sbjct: 138 SSDPYVVVKLGNQTAKTRVIRCCLNPVWNEELNFTL-TEPLGVLNLEVFDKDLWKADDKM 314
Query: 166 GNAGVDLE 173
GN+ ++L+
Sbjct: 315 GNSYLNLQ 338
>TC216401 weakly similar to UP|Q9LP65 (Q9LP65) T1N15.21, partial (82%)
Length = 944
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/63 (31%), Positives = 36/63 (56%)
Frame = +3
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
+SDPYVV +M Q +K+ + P WN++ T +I P+ P+ + +D + + +M
Sbjct: 159 SSDPYVVIKMGKQKLKTRVVNKNLNPEWNDDLTLSIS-DPHAPIHLHVYDKDTFSMDDKM 335
Query: 166 GNA 168
G+A
Sbjct: 336 GDA 344
>BI892610
Length = 422
Score = 43.5 bits (101), Expect = 4e-04
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +3
Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWD 155
G SDPYVVF + +T S+IK+ TWNE F F+ P L V +D
Sbjct: 24 GLSDPYVVFTCNGKTRTSSIKFQKSNLTWNEIFEFDAMDDPPSVLDVVVYD 176
>TC207922 similar to UP|O23522 (O23522) Triacylglycerol lipase like protein,
partial (31%)
Length = 807
Score = 43.5 bits (101), Expect = 4e-04
Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
Frame = +3
Query: 628 QVHSGFLSAYDSVRTRIISLIRLAIGYVDDHFEPLHKWH---IYVTGHSLGGALATLLAL 684
+V GF+S Y + ++ SL + V + L+K I V GHSLG LA L+A
Sbjct: 102 KVECGFMSLYKTKGAQVPSLAESVVEEVRRLID-LYKGEELSISVIGHSLGATLALLVAE 278
Query: 685 ELSSNQLTNMVDYVEEPKTHHIRQIMIANYGRISAMALSCPIFDNNAHLRGAISITMYNF 744
E+S+ CP + +++F
Sbjct: 279 EIST----------------------------------CCPQVP---------PVAVFSF 329
Query: 745 GSPRVGNKRFAEVYNEKIKDSWRVVNHRDIIPTVP 779
G PRVGNK F + K R+VN +D+I VP
Sbjct: 330 GGPRVGNKAFGDRLAAKNVKVLRIVNSQDVITRVP 434
>TC228761 similar to GB|AAP68261.1|31711810|BT008822 At4g21160 {Arabidopsis
thaliana;} , partial (48%)
Length = 729
Score = 42.4 bits (98), Expect = 9e-04
Identities = 22/70 (31%), Positives = 38/70 (53%)
Frame = +1
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
+SDPYVV + QTV++ I P WNEE+ ++ + +++ +D + + M
Sbjct: 91 SSDPYVVLSLGQQTVQTTIIRSNLNPVWNEEYMLSVPEHYGQ-MKLKVFDHDTFSADDIM 267
Query: 166 GNAGVDLEWL 175
G A +DL+ L
Sbjct: 268 GEADIDLQSL 297
>TC208127 weakly similar to UP|Q93ZM0 (Q93ZM0) AT3g18370/MYF24_8, partial
(23%)
Length = 845
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/99 (25%), Positives = 45/99 (45%)
Frame = +3
Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKR 164
GTSDPYV + ++ + T P WN+ F L PL + D N + P
Sbjct: 309 GTSDPYVRVNYGNSKKRTKVIHKTLNPRWNQTLEF---LDDGSPLILHVKDHNALLPESS 479
Query: 165 MGNAGVDLEWLCDGDVHEILVELEGMGGGGKVQLEVKYK 203
+G V+ + L + + + L+G+ G++ +++ K
Sbjct: 480 IGEGVVEYQRLPPNQMSDKWIPLQGV-KSGEIHIQITRK 593
>TC233960 similar to UP|OPSD_SEPOF (O16005) Rhodopsin, partial (10%)
Length = 862
Score = 37.7 bits (86), Expect = 0.022
Identities = 30/95 (31%), Positives = 42/95 (43%), Gaps = 2/95 (2%)
Frame = +2
Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNI--KLPPNKPLQVAAWDANLVAPH 162
GTSDP+V F+ VK+ +K P WNE+ F I K L + D ++++
Sbjct: 140 GTSDPFVHFKQGHMGVKTTVKNKELNPVWNEDLQFGIYEKDAQTGTLSIEVLDKDMLS-D 316
Query: 163 KRMGNAGVDLEWLCDGDVHEILVELEGMGGGGKVQ 197
+G V L + E V L G G GK Q
Sbjct: 317 DCIGTYKVSLSEVPHNQPREYDVHLTG-GQSGKPQ 418
>AW596616
Length = 337
Score = 36.6 bits (83), Expect = 0.049
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +2
Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
++DPYVV +M +K+ + P WN++ T +I P+ P+ + +D + +M
Sbjct: 71 STDPYVVIKMGKSKLKTRVVDKNLNPEWNDDLTLSIS-DPHAPIHLHVYDKDTFIMDDKM 247
Query: 166 GNA 168
+A
Sbjct: 248 VDA 256
>BM093650 similar to GP|15408808|dbj P0492G09.26 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 421
Score = 35.8 bits (81), Expect = 0.084
Identities = 21/64 (32%), Positives = 33/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 626 EVQVHSGFLSAYDS--VRTRIISLIRLAIGYVDDHFEPLHKWHIYVTGHSLGGALATLLA 683
+ VH GF +AY + +R I+ + A + D I TGHS+GGA+A+
Sbjct: 20 DAMVHRGFYTAYHNTTIRPAILDAVERAKKFYGDI-------EIIATGHSMGGAMASFCG 178
Query: 684 LELS 687
L+L+
Sbjct: 179 LDLT 190
>TC207760 weakly similar to UP|Q93ZM0 (Q93ZM0) AT3g18370/MYF24_8, partial (40%)
Length = 1835
Score = 35.8 bits (81), Expect = 0.084
Identities = 33/167 (19%), Positives = 68/167 (39%)
Frame = +3
Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKR 164
GTSDP+V + K+ + + T P WN+ F L + D N + P
Sbjct: 969 GTSDPFVRVHYGNFKKKTKVIYKTLNPQWNQTLEFP---DDGSQLMLYVKDHNALLPTSS 1139
Query: 165 MGNAGVDLEWLCDGDVHEILVELEGMGGGGKVQLEVKYKTFDEIDDEKKWWKMPFVSDFL 224
+G V+ + L + + L+G+ G E+ + ++ + +K +
Sbjct: 1140 IGECVVEYQRLPPNQTADKWIPLQGVKRG-----EIHIQITRKVPEMQKRQSLDSEPSLS 1304
Query: 225 KINGFDSALKKVTGSNTVQTRQFVEYAFGQLKSFNKAYLQKGQMSDT 271
K++ + +K++ ++ R F+E G L+ + + + DT
Sbjct: 1305 KLHQIPNQIKQM----MIKFRSFIE--DGNLEGLSATLSELETLEDT 1427
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,735,272
Number of Sequences: 63676
Number of extensions: 471360
Number of successful extensions: 2681
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2679
length of query: 876
length of database: 12,639,632
effective HSP length: 106
effective length of query: 770
effective length of database: 5,889,976
effective search space: 4535281520
effective search space used: 4535281520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0082a.8