BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079c.8
(757 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 196 3e-50
BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thalia... 163 2e-40
TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N... 155 8e-38
TC220316 102 5e-22
BM892478 99 9e-21
BG882562 92 1e-18
AW781991 89 7e-18
AW703823 weakly similar to GP|9502168|gb|A contains simlarity to... 77 4e-14
TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] ... 63 4e-10
BI973310 59 6e-09
TC232091 54 2e-07
BM309807 similar to GP|5764395|gb| far-red impaired response pro... 53 4e-07
TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired r... 53 6e-07
TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part... 51 2e-06
BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidop... 47 2e-05
BM525744 47 4e-05
TC229006 46 5e-05
AW598452 weakly similar to GP|15982769|gb| At2g27110/T20P8.16 {A... 44 2e-04
TC210850 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, part... 42 8e-04
AW780793 42 0.001
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 196 bits (498), Expect = 3e-50
Identities = 89/138 (64%), Positives = 111/138 (79%)
Frame = +1
Query: 289 VVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFSWALKSFLYFVNGKHP 348
VVFDTTYR+ YDM LGIW+GVDN+G + FF C LLRDE I SFSWALK+FL F+ GK P
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAP 189
Query: 349 KTILTDQDVALKEAIAMELPNTKHAFCIWHIVAKLSSWFSFSLGSRYNDFKYEFHKVYHL 408
+TILTD ++ LKEAIA+ELP TKHAFCIWHI++K S WFS LGS+Y+++K EFH++Y+L
Sbjct: 190 QTILTDHNMWLKEAIAVELPQTKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNL 369
Query: 409 ECEDDFEHKWTLMIAQFG 426
E +DFE W M+ Q+G
Sbjct: 370 EQVEDFEEGWRQMVDQYG 423
>BM178397 similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana}, partial
(20%)
Length = 422
Score = 163 bits (413), Expect = 2e-40
Identities = 75/140 (53%), Positives = 103/140 (73%)
Frame = +1
Query: 355 QDVALKEAIAMELPNTKHAFCIWHIVAKLSSWFSFSLGSRYNDFKYEFHKVYHLECEDDF 414
Q++ LKEA++ E+P TKHAFCIW IVAK SWF+ LG RYND+K EF+++Y+LE +DF
Sbjct: 1 QNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVEDF 180
Query: 415 EHKWTLMIAQFGLGMDKHIDLLYSNRQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLH 474
E W M FGL ++H+ LYS+R WAL +L+ F AGMTTTG+S+SIN++I+RFL
Sbjct: 181 ELGWREMACSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLS 360
Query: 475 VRTSLTDFVNQVGIAVNIRN 494
+T L FV QV +AV+ ++
Sbjct: 361 AQTRLAHFVEQVAVAVDFKD 420
>TC207649 similar to UP|Q9SY66 (Q9SY66) F14N23.12 (At1g10240/F14N23_12),
partial (30%)
Length = 971
Score = 155 bits (391), Expect = 8e-38
Identities = 82/210 (39%), Positives = 128/210 (60%), Gaps = 4/210 (1%)
Frame = +2
Query: 469 IKRFLHVRTSLTDFVNQVGIAVNIRNQAGEEARMRQKYHNPHIRTGFPIEEQAASMLTPY 528
I+ FL +T L FV QV +AV+ ++Q G + M+Q N ++TG P+E AA++LTP+
Sbjct: 107 IQFFLSAQTRLAHFVEQVAVAVDFKDQTG*QQTMQQNLQNVCLKTGAPMESHAATILTPF 286
Query: 529 AFKLLQHEIELSTKYASTEEGENSYIVRFHTKVDGGRIVKWIEEDKSINCSCKEFEFSGI 588
AF LQ ++ L+ YAS E+ ++VR HTK +GGR V W ++ I+CSC +FEF+GI
Sbjct: 287 AFSKLQEQLVLAAHYASFSI-EDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGI 463
Query: 589 LCRHAIRVLVMKNYFHLPTKYLPFRWRQESSLVPTSSHIINCNDGSSFE----FRSLVQW 644
LCRH++RVL N F +P +YLP RWR+ + SS ++ E +++V
Sbjct: 464 LCRHSLRVLSTGNCFQIPDRYLPIRWRR---INMPSSKLLQSAPNDHAERVKLLQNMVSS 634
Query: 645 LQVESLKTKDREEVAIRELERVIRIITDMP 674
L ES K+K+R ++A ++ ++ I + P
Sbjct: 635 LMTESAKSKERLDIATEQVTLLLSRIREQP 724
>TC220316
Length = 988
Score = 102 bits (255), Expect = 5e-22
Identities = 72/274 (26%), Positives = 125/274 (45%), Gaps = 7/274 (2%)
Frame = +1
Query: 406 YHLECEDDFEHKWTLMIAQFGLGMDKHIDLLYSNRQFWALAYLKDFFFAGMTTTGRSESI 465
Y + D+ W ++GL D + +Y R W YLK FFAG+ +ES+
Sbjct: 10 YQSQTVDEXXATWNXXXNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPM---NESL 180
Query: 466 NSYIKRFLHVRTSLTDFVNQVGIAVNIRNQAGEEARMRQKYHNPHIRTGFPIEEQAASML 525
+S+ L+ +T L +F+ + + R + + P ++T P+EEQ +
Sbjct: 181 DSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLY 360
Query: 526 TPYAFKLLQHEIELSTKYAS----TEEGENSYIVRFHTKVDGGRIVKWIEEDKSINCSCK 581
T FK+ Q E+ Y E G + Y+VR +V + + SI+CSC+
Sbjct: 361 TLTVFKIFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNISISCSCQ 540
Query: 582 EFEFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQ--ESSLVPTSSHIINCNDGSSFEFR 639
FE+ G+LCRH +RV + +P++Y+ RW + E + P + SS E +
Sbjct: 541 MFEYEGVLCRHVLRVFQILQLREVPSRYILHRWTRNTEDGVFPDME-----SWSSSQELK 705
Query: 640 SLVQW-LQVESLKTKDREEVAIRELERVIRIITD 672
+L+ W L+ + K D +I + + I+ +
Sbjct: 706 NLMLWSLRETASKYIDAGATSIEKYKLAYEILRE 807
>BM892478
Length = 429
Score = 98.6 bits (244), Expect = 9e-21
Identities = 50/133 (37%), Positives = 78/133 (58%)
Frame = +3
Query: 242 VLKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYD 301
+L+ +S + D F Y +D N + +I WA G S + FGDV+V DT+YR Y
Sbjct: 30 LLEYFQSRQAEDTGFFYAMEVDNGNCM-NIFWADGRSRYSCSHFGDVLVLDTSYRKTVYL 206
Query: 302 MPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFSWALKSFLYFVNGKHPKTILTDQDVALKE 361
+P +VGV++H + GC L+ DE SF+W +++L ++G+ P T++ DQD+A++
Sbjct: 207 VPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQR 386
Query: 362 AIAMELPNTKHAF 374
AIA P T H F
Sbjct: 387 AIAKVFPVTHHRF 425
>BG882562
Length = 416
Score = 91.7 bits (226), Expect = 1e-18
Identities = 43/110 (39%), Positives = 69/110 (62%)
Frame = +3
Query: 255 SFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHG 314
+F Y L+++ +L ++ W S AY FGDVV FD+T N Y++PL +VGV++HG
Sbjct: 81 NFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHG 260
Query: 315 NSIFFGCVLLRDEKIPSFSWALKSFLYFVNGKHPKTILTDQDVALKEAIA 364
S+ GC LL DE ++ W +++L + G+ P+TI+T+ A++ AIA
Sbjct: 261 KSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTIITNXCKAMQSAIA 410
>AW781991
Length = 419
Score = 89.0 bits (219), Expect = 7e-18
Identities = 43/122 (35%), Positives = 64/122 (52%)
Frame = +3
Query: 218 FLERDIRNFIQSQSSIGKESDASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGD 277
F E D RN++++ E D VL + + + +F Y DE+ + ++ WA
Sbjct: 54 FTEVDCRNYMRNNRLRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSITNVFWADPK 233
Query: 278 SIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFSWALK 337
+ Y FGD V FDTTYR NRY +P + GV++HG + FGC L +E SF W K
Sbjct: 234 ARMNYTFFGDTVTFDTTYRSNRYRLPFAFFTGVNHHGQPVLFGCAFLINESEASFVWLFK 413
Query: 338 SF 339
++
Sbjct: 414 TW 419
>AW703823 weakly similar to GP|9502168|gb|A contains simlarity to Arabidopsis
thaliana far-red impaired response protein
(GB:AAD51282.1), partial (11%)
Length = 241
Score = 76.6 bits (187), Expect = 4e-14
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 10/79 (12%)
Frame = +1
Query: 207 LEKGIDTCTLPFLERDIRNFIQSQSSI----------GKESDASNVLKLCKSLKDRDDSF 256
LEKGI LPFLERD+RNF+Q++ + +E+D +L+ CK++K+ DD F
Sbjct: 1 LEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDVLELLEACKAMKEADDDF 180
Query: 257 KYDFTLDENNKLEHIIWAF 275
YDFT+D N+K+E++ W++
Sbjct: 181 VYDFTVDANDKVENVAWSY 237
>TC233004 weakly similar to PIR|G96565|G96565 F6D8.26 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(8%)
Length = 551
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 11/167 (6%)
Frame = +1
Query: 472 FLHVRTSLTDFVNQVGIAVNIRNQAGEEARMRQKYHNPHIRTGFPIEEQAASMLTPYAFK 531
++H TS +FV++ + ++ ++ A + + + ++T E Q A + T F+
Sbjct: 7 YVHKHTSFKEFVDKYDLVLHRKHLKEAMADLETRNVSFELKTRCNFEVQLAKVYTKEIFQ 186
Query: 532 LLQHEIE-----LSTKYASTEEGENSYIVRFHTKVDGG-RIVKWIE-----EDKSINCSC 580
Q E+E +T+ S +Y+V+ +V+G + VK E + I C C
Sbjct: 187 KFQSEVEGMYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETTELDIRCIC 366
Query: 581 KEFEFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQESSLVPTSSHI 627
F + G LCR A+ VL +P++Y+ RWR++ + H+
Sbjct: 367 SLFNYKGYLCRRALNVLNYNGIEEIPSRYILHRWRRDFKQMFNQFHV 507
>BI973310
Length = 457
Score = 59.3 bits (142), Expect = 6e-09
Identities = 34/126 (26%), Positives = 66/126 (51%)
Frame = +3
Query: 412 DDFEHKWTLMIAQFGLGMDKHIDLLYSNRQFWALAYLKDFFFAGMTTTGRSESINSYIKR 471
D+FE W ++ +F + ++ + +Y++RQ W YL++ FF ++ +E + S+
Sbjct: 9 DEFESYWHSLLERFYVMDNEWLQSIYNSRQHWVPVYLRETFFGEISLNEGNEYLISFFDG 188
Query: 472 FLHVRTSLTDFVNQVGIAVNIRNQAGEEARMRQKYHNPHIRTGFPIEEQAASMLTPYAFK 531
++ T+L V Q AV+ ++ +A +P ++T P+E+QAAS+ T F
Sbjct: 189 YVFSSTTLQVLVRQYEKAVSSWHEKELKADYDTTNSSPVLKTPSPMEKQAASLYTRKIFM 368
Query: 532 LLQHEI 537
Q E+
Sbjct: 369 KFQEEL 386
>TC232091
Length = 530
Score = 54.3 bits (129), Expect = 2e-07
Identities = 36/112 (32%), Positives = 51/112 (45%)
Frame = +1
Query: 54 PYEGQIFNSEGDAYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGI 113
P G F SE A +FY +AR+ GF +R D ++S ++ I R F C++ G
Sbjct: 136 PNVGMEFQSEEAAKNFYEEYARREGFVVRLDRCHRSEVDKQ------IISRRFSCNKQGF 297
Query: 114 TKQSKVSEVESQRKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYFHNHHNHQL 165
+ + + R + R C A M V T G KWVV F H+H L
Sbjct: 298 HVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCG---KWVVTKFVKEHSHLL 444
>BM309807 similar to GP|5764395|gb| far-red impaired response protein
{Arabidopsis thaliana}, partial (15%)
Length = 428
Score = 53.1 bits (126), Expect = 4e-07
Identities = 33/118 (27%), Positives = 62/118 (51%), Gaps = 4/118 (3%)
Frame = +3
Query: 507 HNPHIRTGFPIEEQAASMLTPYAFKLLQHEI-ELSTKYASTEEGENS---YIVRFHTKVD 562
++ H+ E+Q +++ T FK Q E+ ++ + E G+ + +IV+ + K D
Sbjct: 15 NSQHLNLLHLXEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEAGDGTIAKFIVQDYEK-D 191
Query: 563 GGRIVKWIEEDKSINCSCKEFEFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQESSL 620
+V W E ++C C+ FE+ G LCRHA+ VL +P+ Y+ RW +++ +
Sbjct: 192 EEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSCVPSHYILKRWTKDAKI 365
>TC228242 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein; Mutator-like transposase-like protein;
phytochrome A signaling protein-like, partial (25%)
Length = 1354
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/113 (25%), Positives = 57/113 (49%), Gaps = 3/113 (2%)
Frame = +2
Query: 511 IRTGFPIEEQAASMLTPYAFKLLQHEI--ELSTKYASTEEGENSYIVRFHTKVDGGRIVK 568
++T P+E+ A + T FK +Q E+ ++ + + + + + R H
Sbjct: 32 LKTPSPLEKSVAGIFTHAVFKKIQAEVIGAVACHPKADRQDDTTIVHRVHDMETNKDFFV 211
Query: 569 WIEEDKS-INCSCKEFEFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQESSL 620
+ + KS ++C C+ FE+ G LCRHA+ VL P++Y+ RW +++ +
Sbjct: 212 VVNQVKSELSCICRLFEYRGYLCRHALFVLQYSGQSVFPSQYILKRWTKDAKV 370
>TC210190 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (65%)
Length = 866
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/136 (30%), Positives = 65/136 (47%)
Frame = +1
Query: 58 QIFNSEGDAYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGITKQS 117
Q F SE A+ FY +A + GF +R + K ++++ + +G R VC++ G
Sbjct: 1 QEFGSEAAAHAFYNAYATEVGFIVR---VSKLSRSRRDGTAIG---RTLVCNKEGFRMAD 162
Query: 118 KVSEVESQRKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYFHNHHNHQLLDDKEVQFLPAY 177
K ++ R+R +R C A ++V + G KWVV F H H L K + Y
Sbjct: 163 KREKIV--RQRAETRVGCRAMIMVRKLSSG---KWVVAKFVKEHTHPLTPGKGRRDF-YY 324
Query: 178 RSIPIVDQDRIMLLSK 193
P +QD+I LS+
Sbjct: 325 EQYP-TEQDKIRELSQ 369
>BI424115 similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (9%)
Length = 402
Score = 47.4 bits (111), Expect = 2e-05
Identities = 18/42 (42%), Positives = 27/42 (63%)
Frame = +2
Query: 577 NCSCKEFEFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQES 618
NCSC+ FE++GILC+H + V + N LP Y+ RW + +
Sbjct: 86 NCSCQMFEYAGILCKHILTVFTVTNVLTLPPHYILKRWTRNA 211
>BM525744
Length = 411
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +3
Query: 231 SSIGKESDASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVV 290
S G ++ ++LKL + D + +D+++ + I WA D+I+ +F V+
Sbjct: 126 SQKGPRTEMQHLLKLL----EHDQYVCWSRKVDDSDAIRDIFWAHPDAIKLLGSFHTVLF 293
Query: 291 FDTTYRINRYDMPLGIWVGV 310
D TY++NRY +PL VGV
Sbjct: 294 LDNTYKVNRYQLPLLEIVGV 353
>TC229006
Length = 991
Score = 46.2 bits (108), Expect = 5e-05
Identities = 34/124 (27%), Positives = 54/124 (43%)
Frame = +2
Query: 43 LSLANNSADWIPYEGQIFNSEGDAYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIY 102
L + + A PYEG F SE A FY +AR+ GF +R + + + + I
Sbjct: 68 LGICEDHAIQEPYEGMEFESEDAAKIFYDEYARRLGFVMR---VMSCRRPERDGR---IL 229
Query: 103 KREFVCHRAGITKQSKVSEVESQRKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYFHNHHN 162
R C++ G + ++ R ++R C A + + G KWV+ F HN
Sbjct: 230 ARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYNKSG---KWVITKFVKDHN 400
Query: 163 HQLL 166
H L+
Sbjct: 401 HPLV 412
>AW598452 weakly similar to GP|15982769|gb| At2g27110/T20P8.16 {Arabidopsis
thaliana}, partial (7%)
Length = 256
Score = 44.3 bits (103), Expect = 2e-04
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +2
Query: 232 SIGKESDASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVVF 291
++GK DA N+L+ CK ++ + Y LDE++++ +++ A S +Y+ GD
Sbjct: 5 TLGK--DAHNLLEYCKRMQAENHGCFYAIQLDEDDRVSNVL*AGTRSRTSYKHMGDAESL 178
Query: 292 DTTYRINRYDMPLGIWVGVDNHGNSI 317
D Y +RY + + G + HG I
Sbjct: 179 DAAYGKHRYAVSYAPYTGRNCHGRMI 256
>TC210850 similar to UP|Q93Z68 (Q93Z68) AT3g59470/T16L24_20, partial (63%)
Length = 1326
Score = 42.4 bits (98), Expect = 8e-04
Identities = 29/104 (27%), Positives = 49/104 (46%)
Frame = +1
Query: 66 AYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGITKQSKVSEVESQ 125
A+ FY +A GF +R + K ++++ + +G R VC++ G K ++
Sbjct: 7 AHAFYNAYATDVGFIVR---VSKLSRSRRDGTAIG---RTLVCNKEGFRMADKREKIV-- 162
Query: 126 RKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYFHNHHNHQLLDDK 169
R+R +R C A ++V + G KWV+ F H H L K
Sbjct: 163 RQRAETRVGCRAMIMVRKLSSG---KWVIAKFVKEHTHPLTPGK 285
>AW780793
Length = 419
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +3
Query: 54 PYEGQIFNSEGDAYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGI 113
P+ G FNS +A +FY + R+ GF++R H +S N N +G ++FVC + G
Sbjct: 132 PFIGMEFNSREEAREFYIAYGRRIGFTVRIHHNRRSRVN---NQVIG---QDFVCSKEGF 293
Query: 114 TKQSKVSEVES-QRKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYF 157
+ + + +R C A + + R G KWVV F
Sbjct: 294 RAKKYLHRKDRVLPPPPATREGCQAMIRLALRDRG---KWVVTKF 419
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,968,283
Number of Sequences: 63676
Number of extensions: 592287
Number of successful extensions: 3048
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3040
length of query: 757
length of database: 12,639,632
effective HSP length: 104
effective length of query: 653
effective length of database: 6,017,328
effective search space: 3929315184
effective search space used: 3929315184
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0079c.8