BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079b.3
(382 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231014 weakly similar to GB|AAH39061.1|24657680|BC039061 LOC28... 34 0.13
TC215424 similar to UP|Q9MA04 (Q9MA04) F20B17.16, partial (26%) 33 0.21
TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 32 0.37
AW101289 27 0.87
TC217685 similar to GB|AAM16165.1|20334818|AY094009 AT4g26750/F1... 31 1.1
TC204808 weakly similar to UP|HQGT_RAUSE (Q9AR73) Hydroquinone g... 30 1.4
BQ742762 PIR|T06782|T0 extensin - soybean, partial (32%) 30 1.4
TC224753 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 30 1.4
BM094601 30 1.8
TC224573 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 30 1.8
BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycopr... 30 1.8
BI426120 homologue to PIR|T06782|T06 extensin - soybean, partial... 30 1.8
TC224762 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 30 1.8
TC205504 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (20%) 30 2.4
TC204070 similar to UP|Q39835 (Q39835) Extensin, partial (34%) 30 2.4
TC210378 29 3.1
TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 29 3.1
NP005385 DNA-directed RNA polymerase 29 3.1
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly... 29 3.1
TC217419 weakly similar to UP|YG49_SCHPO (O60184) Protein C23E6.... 29 3.1
>TC231014 weakly similar to GB|AAH39061.1|24657680|BC039061 LOC284352 protein
{Homo sapiens;} , partial (12%)
Length = 760
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Frame = -2
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTG 62
P PQ P F + FP+ SQ+ P + T P P PP S PP
Sbjct: 501 PTAPQTSPRSSQKVFSPKPH*PFPFQSQSNPHLSPTSATPPASPPTPP----SSSPPPLP 334
Query: 63 STGSKVS----DTQCEATPD 78
S S +S TQ A PD
Sbjct: 333 SARSTLSPARTPTQQHAVPD 274
>TC215424 similar to UP|Q9MA04 (Q9MA04) F20B17.16, partial (26%)
Length = 1030
Score = 33.1 bits (74), Expect = 0.21
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 5/59 (8%)
Frame = +3
Query: 7 QNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYP-----MYPPQYQFQSQAPP 60
QNQ HH N + +PY P P+ ++ P P YP Q+ +Q PP
Sbjct: 75 QNQQHHVPYAPPNPHHPHYPYPPPPPPPPPEASYQPPPPPPPAPMYYPSNNQYSNQPPP 251
>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (58%)
Length = 856
Score = 32.3 bits (72), Expect = 0.37
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP PP P+HP Y+ P S + P P P PP Y ++S PP+
Sbjct: 140 SPPPPHKDPYHPP-----YYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPS 304
Query: 62 GS 63
S
Sbjct: 305 PS 310
Score = 32.3 bits (72), Expect = 0.37
Identities = 20/64 (31%), Positives = 25/64 (38%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTN--PQYPMYPPQYQFQSQAP 59
SP PP P P Y P P HP + + P P PP Y ++S P
Sbjct: 92 SPPPPSPSPPSP-------YYYKSPPPPHKDPYHPPYYYKSPPPPSPSPPPPYYYKSPPP 250
Query: 60 PTGS 63
P+ S
Sbjct: 251 PSPS 262
>AW101289
Length = 412
Score = 27.3 bits (59), Expect(2) = 0.87
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 4/41 (9%)
Frame = +3
Query: 28 TSQNQPLHPDENFTNPQYPMYPPQYQFQSQAP----PTGST 64
TSQN P P E T P P PP + AP P+G T
Sbjct: 138 TSQNSPPPPSETTTTPSSP--PPNTATPTSAPTSPHPSGPT 254
Score = 22.3 bits (46), Expect(2) = 0.87
Identities = 7/19 (36%), Positives = 10/19 (51%)
Frame = +2
Query: 103 RWRVKDDLLLVQSWLNISK 121
RWR D +Q W+ + K
Sbjct: 329 RWRAGDYTTKIQEWMELQK 385
>TC217685 similar to GB|AAM16165.1|20334818|AY094009 AT4g26750/F10M23_90
{Arabidopsis thaliana;} , partial (57%)
Length = 1586
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Frame = +3
Query: 4 YPPQNQPHHPGGNFQNSQY-------QMFPYTSQ----NQPLHPDENFTNPQYPMYPPQY 52
+PP +Q +HP Y Q P SQ N P H +++ P + YP
Sbjct: 936 HPPPSQDYHPPPARSEGSYSELYNHQQYSPENSQHLGPNYPSHETSSYSYPHFQSYPSFT 1115
Query: 53 QFQSQAPPTGSTGSKVSDT--QCEATPDDTQH 82
+ + P+ T + SD ++ P T H
Sbjct: 1116 ESSLPSVPSNYTHYQGSDVSYSSQSAPLTTNH 1211
>TC204808 weakly similar to UP|HQGT_RAUSE (Q9AR73) Hydroquinone
glucosyltransferase (Arbutin synthase) , partial (25%)
Length = 431
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/68 (29%), Positives = 28/68 (40%)
Frame = +3
Query: 10 PHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTGSTGSKVS 69
PH P ++ P TS + P + T PQ PP S +PP+ S S S
Sbjct: 63 PHTPSPPSSSTSSPPTPSTSPPNSMPPPTSSTPPQ----PPSSPSPSTSPPSTSRSSASS 230
Query: 70 DTQCEATP 77
+T +P
Sbjct: 231 ETSRNRSP 254
>BQ742762 PIR|T06782|T0 extensin - soybean, partial (32%)
Length = 420
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Frame = +3
Query: 2 SPYPPQNQP-----HHPGGNFQNSQYQMFPYTSQNQPLH-PDENFTNPQYPMY-----PP 50
SP PP++ P +H ++S + Y S P H P + +P P+Y PP
Sbjct: 93 SPPPPKHSPPPPYYYHSPPPPKHSPPPPYYYHSPPPPKHSPPYKYPSPPPPVYKYKSPPP 272
Query: 51 QYQFQSQAPP 60
Y++ S PP
Sbjct: 273 PYKYPSPPPP 302
>TC224753 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (48%)
Length = 1088
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQ-NSQYQMFPYTSQNQPLHPDENFTNPQ--YPMYPPQYQFQSQA 58
SP PP P P + + QY+ P S + P P N+ +P P PP Y ++S
Sbjct: 80 SPPPPSPSPPPPYEHKDPHYQYKSPPPPSPSPP--PPYNYKSPPPPSPSPPPPYYYKSPP 253
Query: 59 PPTGS 63
PP+ S
Sbjct: 254 PPSPS 268
>BM094601
Length = 429
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPP 50
SP+P PH +S+ P+ + ++ L P F +P Y + PP
Sbjct: 232 SPHPSSLSPH------TSSRSSSLPFPTSSRSLSPPHPFLSPPYSLSPP 360
>TC224573 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (44%)
Length = 1112
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +3
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP PP P P Y+ P S + P H P P PP Y ++S PP+
Sbjct: 270 SPPPPDPSPPPP------YYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYYRSPPPPS 431
Query: 62 GS 63
S
Sbjct: 432 PS 437
Score = 28.5 bits (62), Expect = 5.3
Identities = 22/67 (32%), Positives = 26/67 (37%), Gaps = 5/67 (7%)
Frame = +3
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPL---HPDENFTNP--QYPMYPPQYQFQS 56
SP PP P P + Y S P HP + +P P PP YQ+ S
Sbjct: 462 SPPPPSPSPPPP-----------YYYKSPPPPSPVSHPPYYYKSPPPSTPSPPPPYQYVS 608
Query: 57 QAPPTGS 63
PPT S
Sbjct: 609 PPPPTKS 629
>BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycoprotein (clone
Hyp2.13) - kidney bean (fragment), partial (38%)
Length = 422
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +1
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP PP P P Y+ P S + P H P P PP Y ++S PP+
Sbjct: 136 SPPPPSPSPPPP------YYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYYRSPPPPS 297
Query: 62 GS 63
S
Sbjct: 298 PS 303
>BI426120 homologue to PIR|T06782|T06 extensin - soybean, partial (23%)
Length = 421
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/64 (29%), Positives = 27/64 (41%), Gaps = 5/64 (7%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMY-----PPQYQFQS 56
SP PP++ P P Y+ P P P + +P P+Y PP Y++ S
Sbjct: 8 SPPPPKHSPPPP------YYYKSPPPYKYPSPPPPPYKYPSPPPPVYKYKSPPPPYKYPS 169
Query: 57 QAPP 60
PP
Sbjct: 170PPPP 181
>TC224762 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (38%)
Length = 422
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP PP P P Y+ P S + P H P P PP Y ++S PP+
Sbjct: 125 SPPPPSPSPPPP------YYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYYRSPPPPS 286
Query: 62 GS 63
S
Sbjct: 287 PS 292
>TC205504 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (20%)
Length = 1593
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/55 (32%), Positives = 32/55 (57%), Gaps = 5/55 (9%)
Frame = +2
Query: 307 ANFREIRNRELDLQQADQQLKQSE-----LQLRQEELKFKKAENFRAYMDILNKN 356
A FR+I++R+++LQQA ++ Q LQ+R E ++ E F+A + K+
Sbjct: 26 AKFRDIQDRKVELQQAIVKMVQGGSADGILQVRAERIQSDLEELFKALAERCKKH 190
>TC204070 similar to UP|Q39835 (Q39835) Extensin, partial (34%)
Length = 596
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPP 60
SP PP +P+ + + ++ Y S P++ + +P P PP Y++ S PP
Sbjct: 245 SPPPPPKKPY----KYPSPPPPVYKYKSPPPPVY---KYKSPPPPPPPPPYKYPSPPPP 400
>TC210378
Length = 751
Score = 29.3 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 34 LHPDENFTNPQYPMYPPQYQF 54
L DE+F+NP +P YP +Y F
Sbjct: 521 LSVDEDFSNPTHP*YPKRYSF 459
>TC227533 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (4%)
Length = 1519
Score = 29.3 bits (64), Expect = 3.1
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Frame = +3
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTS--QNQPLHPDENFTNPQ-----YPMY------- 48
P+P NQP+ P + N M P +S P +F P Y Y
Sbjct: 141 PFPAHNQPYAPAP-YGNYPQHMTPRSSFGSGWEQRPHHSFQGPPPHNGGYEYYGGHGGHL 317
Query: 49 ---PPQYQFQSQAPPTGSTGSKV 68
PP Q S APP G+ S V
Sbjct: 318 SDAPPSTQLPSSAPPYGAGPSPV 386
>NP005385 DNA-directed RNA polymerase
Length = 2934
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/67 (26%), Positives = 27/67 (39%), Gaps = 4/67 (5%)
Frame = +1
Query: 4 YPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQY----PMYPPQYQFQSQAP 59
Y PQ+ + P + S ++ P + P P + T+P Y P Y P + S
Sbjct: 2632 YNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVS 2811
Query: 60 PTGSTGS 66
P S S
Sbjct: 2812 PDYSPTS 2832
Score = 29.3 bits (64), Expect = 3.1
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 2 SPYPPQNQPHHPGGNFQNSQYQ----MFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQ 57
SP P P P N Q+++Y P + + P P+ + T+P Y P Y S
Sbjct: 2593 SPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSY---SP 2763
Query: 58 APPTGSTGS 66
+ PT S S
Sbjct: 2764 SSPTYSPSS 2790
>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
(Fragment), partial (86%)
Length = 688
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQ--YPMYPPQYQFQSQAP 59
SP PP PH P Y+ P + + P P ++ +P P PP Y + S P
Sbjct: 323 SPPPPSPTPHPP------YYYKSPPPPTSHPP--PPYHYVSPPPPSPSPPPPYHYTSPPP 478
Query: 60 PTGSTGSK 67
P+ + K
Sbjct: 479 PSPAPAPK 502
Score = 27.7 bits (60), Expect = 9.0
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 4 YPPQNQPHH-PGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTG 62
YPP + P+H P S PY ++ P P P PP Y + S PP+
Sbjct: 116 YPPVSPPYHYPSPPPPPSPSPPPPYYYKSPP---------PPSPSPPPPYYYHSPPPPSP 268
Query: 63 S 63
S
Sbjct: 269 S 271
>TC217419 weakly similar to UP|YG49_SCHPO (O60184) Protein C23E6.09 in
chromosome II, partial (3%)
Length = 692
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +1
Query: 4 YPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQ 57
Y P Q P Q QYQ T Q+QP + PQ PQ QFQ+Q
Sbjct: 22 YSPPQQHMQPHNEPQPLQYQPQHQTLQSQPQPQPGHIQQPQ-----PQPQFQNQ 168
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,219,984
Number of Sequences: 63676
Number of extensions: 244607
Number of successful extensions: 1628
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of query: 382
length of database: 12,639,632
effective HSP length: 99
effective length of query: 283
effective length of database: 6,335,708
effective search space: 1793005364
effective search space used: 1793005364
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0079b.3