BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079b.1
(1571 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CO984748 154 2e-37
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 144 2e-34
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 142 9e-34
BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delal... 138 2e-32
BM892610 121 2e-27
TC224181 120 4e-27
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 116 9e-26
BI427153 115 2e-25
CO983154 111 3e-24
BQ612840 103 4e-23
CO981347 64 5e-23
CO982898 103 8e-22
TC224370 102 1e-21
CO981879 68 3e-20
BF068957 weakly similar to PIR|B85188|B85 retrotransposon like p... 97 6e-20
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 84 5e-16
BG508014 GP|15128578|db prolactin receptor {Paralichthys olivace... 80 5e-15
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 76 1e-13
BI787552 76 1e-13
BI784757 69 1e-11
>CO984748
Length = 810
Score = 154 bits (390), Expect = 2e-37
Identities = 87/196 (44%), Positives = 119/196 (60%), Gaps = 2/196 (1%)
Frame = -2
Query: 450 RHIRAPQTMLASAPSTLG--NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLP 507
++ +APQ LA+A T NW+ + GATHHVT + + + +GN+QV++GNGQGLP
Sbjct: 629 QNAQAPQAYLANANPTQQSQNWYINYGATHHVTASPQNLMNEVPTSGNEQVFLGNGQGLP 450
Query: 508 IQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQ 567
I GS F+SP + L L NLL VP+ITKNLVSVS FA+DN V+FEFH HC V SQ
Sbjct: 449 IT--GSTVFNSPFASNVKLTLNNLLHVPHITKNLVSVS*FAKDN-VFFEFHSSHCVVKSQ 279
Query: 568 DTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNV 627
LLRG+L DGLY F + +S+F + + + S S N + +++ N
Sbjct: 278 VDGSILLRGALSQDGLYVFSNLLNSSFKFTVGKAAANVHMSSLSDLSSHCNNVSTSALNT 99
Query: 628 PSPTAYDLWHSRLGHP 643
+ + LWH+RLGHP
Sbjct: 98 SNYSLVSLWHNRLGHP 51
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 144 bits (364), Expect = 2e-34
Identities = 120/443 (27%), Positives = 197/443 (44%), Gaps = 7/443 (1%)
Frame = +1
Query: 468 NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLL 527
+W+ DSG + H+T + +++ Y+ G G + IG +H L
Sbjct: 1681 DWYLDSGCSRHMTGVKEFL---LNIEPCSTSYVTFGDGSKGKIIGMGKL---VHDGLPSL 1842
Query: 528 LKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFD 587
K +LLV +T NL+S+S+ D G F C V ++ + + L++GS D Y +
Sbjct: 1843 NK-VLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKS-EVLMKGSRSKDNCYLW- 2010
Query: 588 GMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYET 647
P +++S +T +S+ + +WH R GH H
Sbjct: 2011 -------------TPQETSYS---------STCLSSKED-----EVRIWHQRFGHLHLRG 2109
Query: 648 LQSALTTCKI-SVPHKS--KYTICHSCCVAKSHRLPSSASSTLYTAP-LELIFADLWGPA 703
++ + + +P+ + IC C + K ++ T+ LEL+ DL GP
Sbjct: 2110 MKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPM 2289
Query: 704 SIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGG 763
+ES G Y VD FSRFTW+ ++ KSET VF + ++ + IK +++D G
Sbjct: 2290 QVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHG 2469
Query: 764 TEFK--PLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDH 821
EF+ GITH + T QNG VERK+R + E +L +P + W
Sbjct: 2470 REFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAE 2649
Query: 822 AFLTATFLINRLPTPVLGNLSPYHKLFK-VPADYKILRVFGSACYPHLRPYNSSKLSFRS 880
A TA ++ NR+ T G + ++++K K +FGS CY K+ +S
Sbjct: 2650 AMNTACYIHNRV-TLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKS 2826
Query: 881 QECVFLGYSSSHKGYKCLASDGR 903
+FLGYS++ + Y+ S R
Sbjct: 2827 DAGIFLGYSTNSRAYRVFNSRTR 2895
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 142 bits (359), Expect = 9e-34
Identities = 120/443 (27%), Positives = 191/443 (43%), Gaps = 7/443 (1%)
Frame = +1
Query: 468 NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLL 527
+W+ DSG + H+T + + + V G+G I +G +H L
Sbjct: 1684 DWYLDSGCSRHMTGVKEFLVN-IEPCSTSYVTFGDGSKGKITGMGKL-----VHDGLPSL 1845
Query: 528 LKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFD 587
K +LLV +T NL+S+S+ D G F C V ++ + + L++GS D Y +
Sbjct: 1846 NK-VLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKS-EVLMKGSRSKDNCYLWT 2016
Query: 588 GMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYET 647
+S SS SK + WH R GH H
Sbjct: 2017 PQETS----------YSSTCLFSKEDEVKI------------------WHQRFGHLHLRG 2112
Query: 648 LQSALTTCKI-SVPHKS--KYTICHSCCVAKSHRLPSSASSTLYTAP-LELIFADLWGPA 703
++ + + +P+ + IC C + K ++ T+ LEL+ DL GP
Sbjct: 2113 MKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPM 2292
Query: 704 SIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGG 763
+ES G Y VD FSRFTW+ ++ KS+T VF + ++ + IK +++D G
Sbjct: 2293 QVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHG 2472
Query: 764 TEFK--PLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDH 821
EF+ GITH + T QNG VERK+R + E +L +P + W
Sbjct: 2473 REFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAE 2652
Query: 822 AFLTATFLINRLPTPVLGNLSPYHKLFK-VPADYKILRVFGSACYPHLRPYNSSKLSFRS 880
A TA ++ NR+ T G + ++++K K +FGS CY K+ +S
Sbjct: 2653 AMNTACYIHNRV-TLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKS 2829
Query: 881 QECVFLGYSSSHKGYKCLASDGR 903
+FLGYS++ + Y+ S R
Sbjct: 2830 DAGIFLGYSTNSRAYRVFNSRTR 2898
>BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delalandii},
partial (5%)
Length = 667
Score = 138 bits (347), Expect = 2e-32
Identities = 83/220 (37%), Positives = 119/220 (53%), Gaps = 27/220 (12%)
Frame = -3
Query: 458 MLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS 517
+ +SA + +W+PDSGA+HHVT+ + I Q+ +GNGQGL I S G ++FS
Sbjct: 650 LTSSAATPSQSWYPDSGASHHVTNMSQNIQQVAPFEEPIQIIIGNGQGLNINSSGLSTFS 471
Query: 518 SPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGS 577
SPI+ Q +L+L NLL VP ITKNL+ VS+F +DN VYFEFH + C S DT LL G
Sbjct: 470 SPINPQFSLVLSNLLFVPTITKNLIRVSQFCKDNNVYFEFHSYVCLFKS*DTKLVLLEGF 291
Query: 578 LGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTS------------- 624
+GSDGLY + +S +P S ++ S +S + N +V TS
Sbjct: 290 VGSDGLYQSPQLFAS--------MPQSKSYLKSFRSSLSNNIVVKTSIVKTTNCSTKFLF 135
Query: 625 ---NNVP-----------SPTAYDLWHSRLGHPHYETLQS 650
NN + ++ +WHSRLGH + +++
Sbjct: 134 VSANNTVVVDLVVNTTSCNSVSFPIWHSRLGHHSVDAMKT 15
>BM892610
Length = 421
Score = 121 bits (304), Expect = 2e-27
Identities = 58/96 (60%), Positives = 70/96 (72%)
Frame = -3
Query: 828 FLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLG 887
+LINRLPT L P K+P +Y LR FG +CYP LRPYN KL FRS EC+FLG
Sbjct: 413 YLINRLPTTSLKFQVPCTVFNKLP-NYNFLRNFGCSCYPFLRPYNKHKLDFRSHECLFLG 237
Query: 888 YSSSHKGYKCLASDGRIYISKDVQFNEFKFPYSTLF 923
YS+ HKGYKCL+ +G++Y+SKDV FNE K+PYS LF
Sbjct: 236 YSTPHKGYKCLSPNGKLYVSKDVIFNELKYPYSDLF 129
>TC224181
Length = 597
Score = 120 bits (302), Expect = 4e-27
Identities = 66/148 (44%), Positives = 100/148 (66%), Gaps = 3/148 (2%)
Frame = +2
Query: 494 GNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGV 553
G DQ+++GN QGL I+ + F SP++++ + +LKNLL VP+ITKNL+SVS+FA+DN V
Sbjct: 158 GPDQIFIGNSQGLHIKGSSCSFFKSPLNSKFSFVLKNLLHVPSITKNLLSVSQFARDNSV 337
Query: 554 YFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFDGMH---SSNFHKDLPQVPVSSAFSLS 610
YFEFHP+ V SQ T L++G++G++GL+SF ++ SS + SS + S
Sbjct: 338 YFEFHPYTFVVKSQATHGPLIQGTIGANGLHSFTHVNLHPSSALLSSSSSISPSSLSNKS 517
Query: 611 KPASPAVNTIVSTSNNVPSPTAYDLWHS 638
+SP V+TI S S+ VPS ++ +WH+
Sbjct: 518 LTSSPFVHTINSDSSIVPSTSS--IWHT 595
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 116 bits (290), Expect = 9e-26
Identities = 71/189 (37%), Positives = 101/189 (52%), Gaps = 4/189 (2%)
Frame = +2
Query: 631 TAYDLWHSRLGHPHYETLQSALTTCKISVP--HKSKYTICHSCCVAKSHRLPSSASSTLY 688
T+ L H RLGHPH L+ KI VP K K C SC + K R +
Sbjct: 299 TSPKLLHERLGHPH-------LSKLKIMVPSLEKIKDLFCESCQLGKHVRSSXRHVESRV 457
Query: 689 TAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVE 748
+P +I D+WGP + SS Y YF+T +D FS+ T ++L+K +SE + F+ ++
Sbjct: 458 DSPFLVIHXDIWGPNRV-SSMSYRYFVTFIDEFSQCTRVFLMKERSEILS-FLTSVNKIK 631
Query: 749 LKFGLKIKSVQTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGL 806
+FG IK +++D E+ + P GI H+ +CPHT QN ERK+RH+VET
Sbjct: 632 TQFGKTIKILRSDNAKEYFSSVISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETAR 811
Query: 807 SLLACANMP 815
+LL AN P
Sbjct: 812 TLLLHANEP 838
>BI427153
Length = 422
Score = 115 bits (287), Expect = 2e-25
Identities = 65/139 (46%), Positives = 83/139 (58%), Gaps = 4/139 (2%)
Frame = +1
Query: 780 HRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLG 839
H+ TCPHT QNG ERK+ H++ET SL+ +N+PT +W A LTA FLINR+P+ L
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 840 NLSPYHKLFKVPAD---YKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYK 896
N P+ +F P D Y +VFG C+ H KLS RS +CVFLGYS KGY
Sbjct: 181 NQIPHSIVF--PNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYT 354
Query: 897 C-LASDGRIYISKDVQFNE 914
C + R Y+S +V F E
Sbjct: 355 CYFPNMRRYYMSANVTFFE 411
>CO983154
Length = 568
Score = 111 bits (277), Expect = 3e-24
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 4/205 (1%)
Frame = +3
Query: 786 HTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYH 845
HT QNG ERK+RH++ET SL+ N+P +W A LT+ FLINR+P+ L N P+
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHS 182
Query: 846 KLF-KVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCLA-SDGR 903
+F P + +VFG C+ H KLS RS +CVFLGYS KGYKC + + R
Sbjct: 183 LVFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRR 362
Query: 904 IYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISYVPSLQQ--PIPSPHHSHPT 961
Y+S DV F F + FS P + + SLQ+ PIPSP+ +
Sbjct: 363 YYMSADVTF----FEDTPFFS---------------PSVDHSSSLQEVLPIPSPYPLXNS 485
Query: 962 ASHLLIQLIPCSHCPIHQFIVLPLS 986
+ + ++P S + I+ PL+
Sbjct: 486 GQN--VSIVPSSSPNSLEVILPPLT 554
>BQ612840
Length = 441
Score = 103 bits (257), Expect(2) = 4e-23
Identities = 58/120 (48%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Frame = +2
Query: 454 APQTMLASAPSTLGN----WHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQ 509
AP ML APS + W PDSGA+ H ++ I G D++++GNGQ L I
Sbjct: 11 APSAMLTDAPSQPNSNSVIWIPDSGASCHFIGESQNIQQIEPFEGIDRIFIGNGQDLKIT 190
Query: 510 SIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDT 569
S GS+SF SP +++ L L L VP ITKNLVSVS+FA+DNG FEFH +C V SQ T
Sbjct: 191 SSGSSSFISPYNSKVFLSLNRFLHVPYITKNLVSVSQFARDNGFCFEFHSNYCAVKSQVT 370
Score = 24.6 bits (52), Expect(2) = 4e-23
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 574 LRGSLGSDGLYSFDGM 589
L+G++G DGLYSF +
Sbjct: 379 LQGTVGPDGLYSFSNI 426
>CO981347
Length = 624
Score = 63.5 bits (153), Expect(3) = 5e-23
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Frame = +2
Query: 740 FIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHF----LKLGITHRLTCPHTHHQNGSVE 795
F + ++ + G K+K ++TD G EF +L F K+GI PHT QNG E
Sbjct: 116 FRE*HTLIGNQLGTKLKVLRTDNGLEF--VLEQFNEFCRKIGIKRHKIVPHTP*QNGLAE 289
Query: 796 RKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSP 843
R + I+E +L A +P ++W A T ++LINR P+ LG +P
Sbjct: 290 RMNMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTP 433
Score = 44.7 bits (104), Expect(3) = 5e-23
Identities = 18/35 (51%), Positives = 26/35 (73%)
Frame = +3
Query: 702 PASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSET 736
P+ +++ G SYFLT +D FSR W+Y+LK KSE+
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSES 107
Score = 39.7 bits (91), Expect(3) = 5e-23
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 851 PADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYK 896
P +Y L+VFGS + H++ KL R+ +CVF+GY K YK
Sbjct: 456 PPNYSGLKVFGSLAFDHVK---QGKLDARAVKCVFIGYPKGVKRYK 584
>CO982898
Length = 816
Score = 103 bits (256), Expect = 8e-22
Identities = 56/119 (47%), Positives = 71/119 (59%)
Frame = -1
Query: 834 PTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHK 893
PT + PY +LF DY RVFG AC+P +RPYN K +F+S EC+FLG +SHK
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHK 418
Query: 894 GYKCLASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIPVISYVPSLQQPI 952
YKCLA G++ +SKDV FNE FPY LF P S S+ IPV +P+ P+
Sbjct: 417 NYKCLAPAGKL-VSKDVIFNEI*FPYKELF---LPDS-----STCIPVPQPIPATVPPV 268
Score = 81.6 bits (200), Expect = 2e-15
Identities = 49/119 (41%), Positives = 66/119 (55%)
Frame = -3
Query: 761 DGGTEFKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWD 820
D G EF PL GI H+L PHT +QN VERK RHIV+ GLSLL+ A++P +W
Sbjct: 814 DWGGEF*PLTEFLND*GIIHKLIFPHTQYQN-VVERKQRHIVKFGLSLLSHASLPLKFWG 638
Query: 821 HAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFR 879
HAF+T FLINRLP + S + + + A I + +P + SK+ F+
Sbjct: 637 HAFITPVFLINRLPHCIN*LRSSLYTIVQPNARLLIPKSLWVCLFPSYQTL*YSKIQFQ 461
>TC224370
Length = 320
Score = 102 bits (255), Expect = 1e-21
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 2/98 (2%)
Frame = -2
Query: 869 RPYNSSKLSFRSQECVFLGYSSSHKGYKCLASDGRIYISKDVQFNEFKFPYSTLFSSEFP 928
RP+++ KL+FRSQEC+FLGYSSSHKGYKCL+S GRIYISKDV FNE +FPYS LF
Sbjct: 313 RPFHTQKLNFRSQECLFLGYSSSHKGYKCLSSIGRIYISKDVLFNEIRFPYSDLF----- 149
Query: 929 ASNPSSVSSVIPVISYVPSLQQP--IPSPHHSHPTASH 964
AS+ +S+ ++ S P+L P P+P S + SH
Sbjct: 148 ASSSNSI*NLDSYFSLNPNLSPPSMAPTP*SSLLSPSH 35
>CO981879
Length = 576
Score = 67.8 bits (164), Expect(2) = 3e-20
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = -1
Query: 738 TVFIQFQAMVELKFGLKIKSVQTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQNGSVE 795
++F F M++ +F +KIK ++D G E+ K L L+ GI H+ +C T QNG E
Sbjct: 573 SIFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAE 394
Query: 796 RKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINR 832
RK+RH+ E +LL P W A LT T+L N+
Sbjct: 393 RKNRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283
Score = 50.8 bits (120), Expect(2) = 3e-20
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -2
Query: 857 LRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNEF 915
L++FG + H+ N KL R+++CVF+GY+ + KGYKC + + +++ DV F E
Sbjct: 194 LKIFGCTVFVHIHEPNQGKLEPRAKKCVFVGYAPNQKGYKCFDPTSKKTFVTIDVTFFE- 18
Query: 916 KFPY 919
K P+
Sbjct: 17 KTPF 6
>BF068957 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (3%)
Length = 420
Score = 97.1 bits (240), Expect = 6e-20
Identities = 48/137 (35%), Positives = 84/137 (61%)
Frame = -2
Query: 100 LLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSKNTSDYLK 159
L S+LS SVL V+ HS+Q+W+ + + F H+ ++ QL + +R++T K + L
Sbjct: 419 LQSTLSKSVLSRVLASDHSYQVWDKIHEHFSLHTKTRAPQLHTAMRAVTLDGKTIEE*L* 240
Query: 160 RIKSIVNALISIGDPVTYREHLEAIFDGLREDYSHLMTIVTSREFPCSISQAEAMVIAHE 219
+IK VN L S+G PV ++E++EA+ +GL DY+ +++++ S++ SI++ EA++ HE
Sbjct: 239 KIKGFVNELASVGVPVHHKEYVEALLEGLPSDYASVVSVIESKKRTPSIAEIEALLYRHE 60
Query: 220 ARLDRLRLRQHAASSPS 236
RL R +S S
Sbjct: 59 TRLMRYNKEAQVMNSAS 9
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 84.0 bits (206), Expect = 5e-16
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Frame = +1
Query: 667 ICHSCCVAKSHR--LPSSASSTLYTAPLELIFADLWGPASIESSAGYSYFLTCVDAFSRF 724
+C +C + K HR P+ S + L+++ DL I + +YF+T +D FS+
Sbjct: 328 VCDTCEIGKKHRESFPTGKSWRMKKL-LKIVHLDLC-TVEIPTHGDNNYFITFIDDFSKK 501
Query: 725 TWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGGTEFKPLLPHFLKLGITHRLTC 784
W+Y LK+KSE F F+A E + G K+K++ D G E+ F K GI H+LT
Sbjct: 502 MWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYLSYTIFFEKHGIQHQLTT 681
Query: 785 PHTHHQNGSVERKHRHIVE 803
+T NG ERK++ I++
Sbjct: 682 KYTPQHNGVTERKNKTIMD 738
>BG508014 GP|15128578|db prolactin receptor {Paralichthys olivaceus}, partial
(2%)
Length = 450
Score = 80.5 bits (197), Expect = 5e-15
Identities = 42/145 (28%), Positives = 77/145 (52%)
Frame = +1
Query: 11 PTPTPISVAIPQLSSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPR 70
P P S + S H + KL +N+L W Q VE ++++ L FL++ P IP +
Sbjct: 16 PPLFPPSSSSSPTSLKQFSHSISHKLHVTNYLLWLQQVELVIKSRHLHHFLVN-PLIPKK 192
Query: 71 FLSDEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFH 130
+ +D + + W++ D WL S++ +L V+ C+ SWQ+W+ + F
Sbjct: 193 YALVKDCDSDTTTEVYHGWKEQDQFFLAWLRSTIYGDMLTHVIGCKSSWQLWDRLQLHFQ 372
Query: 131 AHSLAQSTQLRSELRSITKGSKNTS 155
+ + A+ QLR+ELR ++ G+++T+
Sbjct: 373 SLTRARVRQLRNELRCLSHGNRSTT 447
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment)
, partial (21%)
Length = 912
Score = 76.3 bits (186), Expect = 1e-13
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -2
Query: 814 MPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNS 873
MP ++W++A L A +LIN +PTP L N SPY +L D LR+FG CY N
Sbjct: 911 MPPNFWNYALLHAAYLINCIPTPFLQNTSPYERLHGHIPDISHLRIFGCLCYASTIKANR 732
Query: 874 SKLSFRSQECVFLGYSSSHKGYKCL-ASDGRIYISKDVQFNE 914
KL R+ C+F+G+ + KGY I S++V F E
Sbjct: 731 KKLEPRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNVVFYE 606
>BI787552
Length = 421
Score = 75.9 bits (185), Expect = 1e-13
Identities = 34/77 (44%), Positives = 50/77 (64%)
Frame = +2
Query: 36 LDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVENPAFLVWEQHDSA 95
LDD N+L W+QHVE +++ H+LQ F+++ +PPR+ +++DR NP + WE D
Sbjct: 194 LDDLNYLHWRQHVEPVIKLHKLQRFVVNLV-VPPRYFTEDDRIADRVNPEYETWEVQDQT 370
Query: 96 LFTWLLSSLSPSVLPTV 112
L WL S+LS SVL V
Sbjct: 371 LLVWLQSTLSKSVLSRV 421
>BI784757
Length = 430
Score = 69.3 bits (168), Expect = 1e-11
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Frame = +1
Query: 667 ICHSCCVAKSHRLPSSASSTLYTAP-LELIFADLWGPASIESSAGYSYFLTCVDAFSRFT 725
+C C K R + + LE+I++D+ GP ES G YF++ +D +R
Sbjct: 64 VCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTESLGGNRYFISFIDELTRKV 243
Query: 726 WIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGG-----TEFKPLLPHFLKLGITH 780
W+YL++RKS+ VF +F+ M + + G IK ++T+GG TEF+ + GI H
Sbjct: 244 WVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEYVSTEFQEFCD---QQGIIH 414
Query: 781 RLTCP 785
+T P
Sbjct: 415 EVTPP 429
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,444,663
Number of Sequences: 63676
Number of extensions: 1589708
Number of successful extensions: 27521
Number of sequences better than 10.0: 703
Number of HSP's better than 10.0 without gapping: 16345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22793
length of query: 1571
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1461
effective length of database: 5,635,272
effective search space: 8233132392
effective search space used: 8233132392
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0079b.1