BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0076a.6
(123 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209961 similar to UP|ATPL_SULAC (P62020) Membrane-associated A... 137 1e-33
TC209960 136 3e-33
TC209714 similar to UP|Q9FI64 (Q9FI64) Arabidopsis thaliana geno... 117 1e-27
TC213654 similar to UP|Q9FI64 (Q9FI64) Arabidopsis thaliana geno... 68 4e-17
TC213105 similar to UP|Q9FI64 (Q9FI64) Arabidopsis thaliana geno... 79 4e-16
TC234865 52 7e-08
TC206705 similar to UP|Q8MMZ5 (Q8MMZ5) CGMP-dependent protein ki... 50 2e-07
TC206707 50 3e-07
TC229910 similar to GB|AAH09376.1|14424719|BC009376 chromobox ho... 43 3e-05
TC220974 similar to UP|MP62_LYTPI (P91753) Mitotic apparatus pro... 43 3e-05
TC229909 43 4e-05
TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated pr... 42 5e-05
TC206706 similar to UP|Q9NJZ3 (Q9NJZ3) Fruitless type E, partial... 42 5e-05
TC226381 weakly similar to UP|Q71D43 (Q71D43) BG:DS08249.4 (Frag... 42 7e-05
TC211475 similar to UP|P79122 (P79122) Pinin, partial (5%) 41 2e-04
TC226380 similar to UP|Q6TUE7 (Q6TUE7) LRRGT00097, partial (3%) 40 2e-04
CK606020 40 2e-04
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 40 4e-04
BI699342 39 5e-04
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 39 8e-04
>TC209961 similar to UP|ATPL_SULAC (P62020) Membrane-associated ATPase C
chain (Sul-ATPase proteolipid chain) , partial (13%)
Length = 586
Score = 137 bits (345), Expect = 1e-33
Identities = 74/118 (62%), Positives = 83/118 (69%), Gaps = 3/118 (2%)
Frame = +2
Query: 9 QVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEEC 68
QVEE +RKWVI GI R PLKPI+TT +EEE++EE + EEC
Sbjct: 11 QVEE---SDSTRKWVIAGIPSRAPLKPIFTT---------KEEEKDEEGDL------EEC 136
Query: 69 STTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGG---EFFTPPDLEAVFIRHVERAN 123
STTPKGEEA+IP TLKCPP PRK KPSLKCN+RGG EFFTPPDLE VFIRHVER +
Sbjct: 137 STTPKGEEAKIPTTLKCPPAPRKRKPSLKCNYRGGGAREFFTPPDLETVFIRHVERTS 310
>TC209960
Length = 727
Score = 136 bits (342), Expect = 3e-33
Identities = 78/126 (61%), Positives = 85/126 (66%), Gaps = 4/126 (3%)
Frame = +1
Query: 1 MGFSEKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETF 60
MGFSEK Q VEE +RKWVI GI R PLKPIYTT K E+H+EEE
Sbjct: 322 MGFSEKPQ-VEE---SDSTRKWVIAGIPSRVPLKPIYTT----KEEEHDEEECS------ 459
Query: 61 MEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGG----EFFTPPDLEAVFI 116
STTPKGEEA+IP +LKCPP P+K KPSLKCN+RGG EFFTPPDLE VFI
Sbjct: 460 --------STTPKGEEAKIPTSLKCPPAPKKRKPSLKCNYRGGGGSREFFTPPDLETVFI 615
Query: 117 RHVERA 122
RHVERA
Sbjct: 616 RHVERA 633
>TC209714 similar to UP|Q9FI64 (Q9FI64) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K21I16, partial (24%)
Length = 785
Score = 117 bits (293), Expect = 1e-27
Identities = 75/138 (54%), Positives = 86/138 (61%), Gaps = 16/138 (11%)
Frame = +2
Query: 1 MGFSEKSQQV----EERGVESESRKWVITGIALRRPLKPIYTT-TPVEKTEQHEEEEEEE 55
MGFSEK+Q + + +RKWVI GIALR PLKPIYTT P EK E++EE
Sbjct: 143 MGFSEKAQVEGAFDSDTSNNNNNRKWVIAGIALRAPLKPIYTTMIPTEK-----EQKEEV 307
Query: 56 EEETFMEEEEEECS---TTPKGEEARIPATLKCPPPPRKPKPSLK--CNFRGG------E 104
E ET EE CS TTP E++IP L CPP PRK KP+LK N+ GG E
Sbjct: 308 EIET--TEECSSCSSSTTTPTSVESKIPTPLTCPPAPRKRKPALKKCYNYCGGGGGVVRE 481
Query: 105 FFTPPDLEAVFIRHVERA 122
FFTPPDLE VFIRHVE+A
Sbjct: 482 FFTPPDLETVFIRHVEKA 535
>TC213654 similar to UP|Q9FI64 (Q9FI64) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K21I16, partial (43%)
Length = 444
Score = 68.2 bits (165), Expect(2) = 4e-17
Identities = 44/103 (42%), Positives = 51/103 (48%)
Frame = +2
Query: 1 MGFSEKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETF 60
MGFS +ESES+KWVI GI + LKPI T +
Sbjct: 53 MGFSHSD-------LESESKKWVIAGIGVCS-LKPIKTKRVAGGGDN------------- 169
Query: 61 MEEEEEECSTTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGG 103
EEEEE STTP +EARIP L CPP PRK +P +C GG
Sbjct: 170 -EEEEETRSTTPTAKEARIPEKLPCPPAPRKRRPPSRCGSNGG 295
Score = 35.0 bits (79), Expect(2) = 4e-17
Identities = 15/19 (78%), Positives = 17/19 (88%)
Frame = +1
Query: 104 EFFTPPDLEAVFIRHVERA 122
EFFTPPDLE+VF HVE+A
Sbjct: 313 EFFTPPDLESVFKCHVEKA 369
>TC213105 similar to UP|Q9FI64 (Q9FI64) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K21I16, partial (26%)
Length = 416
Score = 79.3 bits (194), Expect = 4e-16
Identities = 54/117 (46%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Frame = -1
Query: 1 MGFSEKSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETF 60
MGFS +ESES+KWVI GI +R LKPI T + + E EEEE
Sbjct: 299 MGFSHSD-------LESESKKWVIAGIGVRS-LKPINTKRVGGGSGGGDAENEEEEAR-- 150
Query: 61 MEEEEEECSTTPKGEEARIPATLKCPPPPRKPK-PSLKCNFRGG----EFFTPPDLE 112
STTP +EARIP L CPP PRK + P +C GG EFFTPPDLE
Sbjct: 149 --------STTPTAKEARIPEKLPCPPAPRKRRPPPSRCGNGGGGGVREFFTPPDLE 3
>TC234865
Length = 373
Score = 52.0 bits (123), Expect = 7e-08
Identities = 28/75 (37%), Positives = 39/75 (51%), Gaps = 3/75 (4%)
Frame = +3
Query: 44 KTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPP-PPRKPKPSLKCNFRG 102
K + E ++E ++ M + S+TPKGE+ RI CPP P +KP+ C+ R
Sbjct: 75 KKQHQESRKQETPKKRDMGSDVAAVSSTPKGEKFRIAEVTTCPPAPKKKPRLLSNCSLRR 254
Query: 103 G--EFFTPPDLEAVF 115
FF PPDLE F
Sbjct: 255 SPLAFFAPPDLETFF 299
>TC206705 similar to UP|Q8MMZ5 (Q8MMZ5) CGMP-dependent protein kinase,
partial (3%)
Length = 1324
Score = 50.4 bits (119), Expect = 2e-07
Identities = 23/48 (47%), Positives = 29/48 (59%), Gaps = 2/48 (4%)
Frame = +2
Query: 70 TTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGG--EFFTPPDLEAVF 115
+TPKG++ RIP CPP P+KP+ C+ R FF PPDLE F
Sbjct: 680 STPKGQKFRIPEISTCPPAPKKPRVLSNCSLRRSPLSFFAPPDLEHFF 823
>TC206707
Length = 624
Score = 50.1 bits (118), Expect = 3e-07
Identities = 23/48 (47%), Positives = 29/48 (59%), Gaps = 2/48 (4%)
Frame = +1
Query: 70 TTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGG--EFFTPPDLEAVF 115
+TPKG++ RIP CPP P+KP+ C+ R FF PPDLE F
Sbjct: 55 STPKGKKFRIPEISTCPPAPKKPRVLSHCSLRRSPLSFFAPPDLEPFF 198
>TC229910 similar to GB|AAH09376.1|14424719|BC009376 chromobox homolog 8
{Homo sapiens;} , partial (9%)
Length = 584
Score = 43.1 bits (100), Expect = 3e-05
Identities = 31/94 (32%), Positives = 43/94 (44%), Gaps = 8/94 (8%)
Frame = +2
Query: 31 RPLKPIYTTTP-VEKTEQHEEEEEEEEEETFMEEE--EEECSTTPKGEEARIPATLKCPP 87
RP+ PI T P V T +H+ +E E+ EEEC T + L CPP
Sbjct: 275 RPITPIRTVVPTVRTTLKHDLGTTTTTKEVLNEDVLIEEECHTPTSPSQKLSTNPLVCPP 454
Query: 88 PPRKP-----KPSLKCNFRGGEFFTPPDLEAVFI 116
P+KP + +L + G F P DL +VF+
Sbjct: 455 APKKPRVVPRRHNLDPPSQQGFFKVPHDLASVFV 556
>TC220974 similar to UP|MP62_LYTPI (P91753) Mitotic apparatus protein p62,
partial (7%)
Length = 436
Score = 43.1 bits (100), Expect = 3e-05
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKP 94
E + EEEE+EEEEE EEEEE P ++ P PPPP P+P
Sbjct: 193 EVSSGEEEEEDEEEEEAASSEEEEEDEDLPPPPVSKNP-----PPPPANPQP 333
>TC229909
Length = 752
Score = 42.7 bits (99), Expect = 4e-05
Identities = 32/97 (32%), Positives = 46/97 (46%), Gaps = 11/97 (11%)
Frame = +1
Query: 31 RPLKPIYTTTP-VEKTEQHEEEEEEEEEETFMEEE---EEECSTTPKGEEARIPAT-LKC 85
RP+ PI T P V T +H+ + + E+ EEEC T P ++P L C
Sbjct: 130 RPITPIRTVVPTVRTTLKHDLGTTTTTTKEVLNEDVVIEEECHT-PTSPSQKLPTNPLVC 306
Query: 86 PPPPRKPK------PSLKCNFRGGEFFTPPDLEAVFI 116
PP P+KP+ +L + G F P DL +VF+
Sbjct: 307 PPAPKKPRVVPRRLKNLDPPSQEGFFQVPHDLASVFV 417
>TC226613 similar to UP|Q8H0V8 (Q8H0V8) Spliceosome associated protein-like
(At4g21660), partial (59%)
Length = 1844
Score = 42.4 bits (98), Expect = 5e-05
Identities = 28/60 (46%), Positives = 32/60 (52%), Gaps = 17/60 (28%)
Frame = +2
Query: 34 KPIYTTTPVEKT---------EQHEEEEEEEEEETFMEEEEEEC--------STTPKGEE 76
+P Y PV+KT E+ EEEEEEEEEE MEEEE E S+TP G E
Sbjct: 809 QPNYEEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTPTGVE 988
>TC206706 similar to UP|Q9NJZ3 (Q9NJZ3) Fruitless type E, partial (4%)
Length = 884
Score = 42.4 bits (98), Expect = 5e-05
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Frame = +2
Query: 6 KSQQVEERGVESESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEE 65
K +Q ++ +S + K + + L Y ++ ++ +E + E +
Sbjct: 467 KKKQQQQHNTKSNNNKKQQEEVPVPTVLPSSYCSSSSISSQDSSNSKEVDNMHGSAEVID 646
Query: 66 ---EECSTTPKGEEARIPATLKCPPPPRKPKPSLKCNFRGGE----FFTPPDLEAVF 115
CST PKG++ RIP CPP P+KP+ C+ R T PDLE F
Sbjct: 647 VCNSPCST-PKGKKFRIPEISTCPPAPKKPRVLSNCSLRRXSTSXILCTXPDLEHFF 814
Score = 30.4 bits (67), Expect = 0.21
Identities = 16/51 (31%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Frame = +3
Query: 47 QHEEEEEEEEEETFMEEEEEECS---TTPKGEEARIPATLKCPPPPRKPKP 94
Q EE++ EE++T + TT K + R L CPP P P
Sbjct: 426 QQEEQDSREEQQTSRRSSNSSTTQRATTTKNNKKRFLFQLFCPPATAAPPP 578
>TC226381 weakly similar to UP|Q71D43 (Q71D43) BG:DS08249.4 (Fragment),
partial (23%)
Length = 732
Score = 42.0 bits (97), Expect = 7e-05
Identities = 19/49 (38%), Positives = 29/49 (58%)
Frame = +3
Query: 45 TEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPK 93
T+ E + + ++ +E C T P +E++IPAT+ CPP PRKPK
Sbjct: 189 TQAEAENDGAITVDVGVKVNDESCRT-PTSKESKIPATMTCPPAPRKPK 332
>TC211475 similar to UP|P79122 (P79122) Pinin, partial (5%)
Length = 436
Score = 40.8 bits (94), Expect = 2e-04
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +2
Query: 45 TEQHEEEEEE----EEEETFMEEEEEECSTTPKGEEARIPATLKCPPPPRKPKP 94
++QHEEEEEE EEEE EEEE+E P ++ P PPPP P+P
Sbjct: 134 SQQHEEEEEEVSSGEEEEASSEEEEDE--NLPPPPISKNPP----PPPPSNPQP 277
Score = 37.7 bits (86), Expect = 0.001
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +2
Query: 35 PIYTTTPVEKTEQHEEEE------EEEEEETFMEEEEEECSTTPKGEEARIPATLKCPPP 88
P +++ E+ E+ ++++ EEEEEE EEEE S + E P K PPP
Sbjct: 74 PTASSSDSEEEEEQQQQQPSSQQHEEEEEEVSSGEEEEASSEEEEDENLPPPPISKNPPP 253
Query: 89 PRKPKP 94
P P
Sbjct: 254 PPPSNP 271
>TC226380 similar to UP|Q6TUE7 (Q6TUE7) LRRGT00097, partial (3%)
Length = 715
Score = 40.4 bits (93), Expect = 2e-04
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = +3
Query: 66 EECSTTPKGEEARIPATLKCPPPPRKPK 93
+E TP +E++IPAT+ CPP PRKPK
Sbjct: 264 DENYRTPTSKESKIPATMTCPPAPRKPK 347
>CK606020
Length = 340
Score = 40.4 bits (93), Expect = 2e-04
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 17 SESRKWVITGIALRRPLKPIYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
S S ++ I + P P+ ++ + EEEEEEEEEE EEEEEE + EE
Sbjct: 106 SHSLRFQIQFNPMSLPDSPVANDDEIDPSLDEEEEEEEEEEEEEEEEEEEEIEEEEEEEE 285
Query: 77 ARI 79
+
Sbjct: 286 EEV 294
Score = 39.3 bits (90), Expect = 5e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARI 79
E+ E+ EEEEEEEEEE EEEEEE + EE +
Sbjct: 211 EEEEEEEEEEEEEEEEIEEEEEEEEEEVEEEVEEEEV 321
Score = 35.0 bits (79), Expect = 0.009
Identities = 19/34 (55%), Positives = 22/34 (63%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEEEEEEEEE E EEEE + EE
Sbjct: 199 EEEEEEEEEEEEEEEEEEEEIEEEEEEEEEEVEE 300
Score = 32.7 bits (73), Expect = 0.043
Identities = 18/34 (52%), Positives = 21/34 (60%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
E+ E+ EEE EEEEEE E EEE +GEE
Sbjct: 232 EEEEEEEEEIEEEEEEEEEEVEEEVEEEEVEGEE 333
Score = 28.1 bits (61), Expect = 1.1
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEE 67
E+ E+ EEE EEE EE +E EE E
Sbjct: 265 EEEEEEEEEVEEEVEEEEVEGEEVE 339
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen,
partial (7%)
Length = 466
Score = 39.7 bits (91), Expect = 4e-04
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1
Query: 36 IYTTTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEE 76
+ + T E+ E+ EEEEEEEEEE EEEEEE + EE
Sbjct: 7 VLSDTQEEEEEKEEEEEEEEEEEEEEEEEEEEEEKEEEEEE 129
Score = 38.5 bits (88), Expect = 8e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 39 TTPVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARI 79
T E+ ++ EEEEEEEEEE EEEEEE + EE +
Sbjct: 19 TQEEEEEKEEEEEEEEEEEEEEEEEEEEEEKEEEEEEEGNV 141
Score = 25.0 bits (53), Expect = 8.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECST 70
E+ E+ +EEEEEEE + +E++ T
Sbjct: 91 EEEEEEKEEEEEEEGNVLVIIDEDKHDT 174
>BI699342
Length = 325
Score = 39.3 bits (90), Expect = 5e-04
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = -1
Query: 39 TTPVEKTEQHEEEEEEEEEETFMEEEEEE 67
T+ E+ E+ EEEEEEEEEE EEEEEE
Sbjct: 277 TSNAEEEEEEEEEEEEEEEEEEEEEEEEE 191
Score = 37.4 bits (85), Expect = 0.002
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = -1
Query: 38 TTTPVEKTEQHEEEEEEEEEETFMEEEEEE 67
T+ E+ E+ EEEEEEEEEE EEEEE+
Sbjct: 277 TSNAEEEEEEEEEEEEEEEEEEEEEEEEEK 188
Score = 35.4 bits (80), Expect = 0.007
Identities = 17/29 (58%), Positives = 21/29 (71%)
Frame = -1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTT 71
E+ E+ EEEEEEEEEE EEEE+ + T
Sbjct: 259 EEEEEEEEEEEEEEEEEEEEEEEKAINLT 173
Score = 30.4 bits (67), Expect = 0.21
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -1
Query: 52 EEEEEEETFMEEEEEECSTTPKGEEARIPATL 83
EEEEEEE EEEEEE + EE I T+
Sbjct: 265 EEEEEEEEEEEEEEEEEEEEEEEEEKAINLTM 170
Score = 30.0 bits (66), Expect = 0.28
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -1
Query: 51 EEEEEEEETFMEEEEEECSTTPKGEEA 77
EEEEEEEE EEEEEE + E+A
Sbjct: 265 EEEEEEEEEEEEEEEEEEEEEEEEEKA 185
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 38.5 bits (88), Expect = 8e-04
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = +1
Query: 41 PVEKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEAR 78
P + EEEEEEEEEE EEEEEE + EEAR
Sbjct: 406 PALAEPEEEEEEEEEEEEENEEEEEEEEGEEEEEEEAR 519
Score = 36.2 bits (82), Expect = 0.004
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 43 EKTEQHEEEEEEEEEETFMEEEEEECSTTPKGEEARI 79
E+ E+ EEE EEEEEE EEEEEE + + E A++
Sbjct: 436 EEEEEEEEENEEEEEEEEGEEEEEEEARSMVNELAQL 546
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.309 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,331,570
Number of Sequences: 63676
Number of extensions: 121312
Number of successful extensions: 3899
Number of sequences better than 10.0: 366
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2743
length of query: 123
length of database: 12,639,632
effective HSP length: 85
effective length of query: 38
effective length of database: 7,227,172
effective search space: 274632536
effective search space used: 274632536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0076a.6