BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0076a.11
(428 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205023 similar to UP|O62531 (O62531) CG9388-PA (Clathrin-assoc... 574 e-164
TC205025 similar to UP|O62531 (O62531) CG9388-PA (Clathrin-assoc... 453 e-128
TC218127 weakly similar to UP|AP47_CAEEL (P35602) Clathrin coat ... 259 2e-80
TC205029 286 1e-77
TC218128 weakly similar to UP|AP47_CAEEL (P35602) Clathrin coat ... 261 4e-70
TC206859 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly li... 256 2e-68
TC207417 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly li... 249 1e-66
TC228311 homologue to UP|O23140 (O23140) AP47/50p, partial (59%) 248 4e-66
CF806829 208 2e-65
AW780639 195 4e-50
TC228313 homologue to UP|O23140 (O23140) AP47/50p, partial (43%) 171 8e-43
TC231749 similar to UP|O76928 (O76928) CG3035-PA (Mu3 subunit of... 133 1e-31
TC205026 weakly similar to UP|AP54_YEAST (Q00776) Clathrin coat ... 112 3e-25
TC205024 similar to UP|AP47_CAEEL (P35602) Clathrin coat assembl... 109 3e-24
BE022116 93 3e-19
TC206858 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly li... 74 1e-13
AW101280 57 2e-13
TC205027 similar to UP|AP47_CAEEL (P35602) Clathrin coat assembl... 68 9e-12
BG316014 67 2e-11
BI321645 66 3e-11
>TC205023 similar to UP|O62531 (O62531) CG9388-PA (Clathrin-associated
protein) (LD31377p) (Clathrin-associated adaptor complex
AP-1 medium chain), partial (63%)
Length = 1347
Score = 574 bits (1479), Expect = e-164
Identities = 289/301 (96%), Positives = 294/301 (97%)
Frame = +3
Query: 128 YTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVESVNILVNS 187
YTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGI+YKKNEVFLDVVESVNILVNS
Sbjct: 3 YTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNS 182
Query: 188 NGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRL 247
NGQII SDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGK+IDLEDIKFHQCVRL
Sbjct: 183 NGQIIISDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKSIDLEDIKFHQCVRL 362
Query: 248 ARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVKARSQFKER 307
ARFENDRTISFIPPDG+FDLMTYRLSTQVKPL+WVEA VEKHSKSRIEIMVKARSQFKER
Sbjct: 363 ARFENDRTISFIPPDGSFDLMTYRLSTQVKPLVWVEAQVEKHSKSRIEIMVKARSQFKER 542
Query: 308 STATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLRAEFRLPS 367
STATNVEIELPVP DA NPNVRTSMGSA+YAPEKDALIWKIRSFPGGKEYMLRAEF LPS
Sbjct: 543 STATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFHLPS 722
Query: 368 ITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 427
I EEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL
Sbjct: 723 IVDEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 902
Query: 428 I 428
I
Sbjct: 903 I 905
>TC205025 similar to UP|O62531 (O62531) CG9388-PA (Clathrin-associated
protein) (LD31377p) (Clathrin-associated adaptor complex
AP-1 medium chain), partial (50%)
Length = 1112
Score = 453 bits (1165), Expect = e-128
Identities = 226/235 (96%), Positives = 231/235 (98%)
Frame = +1
Query: 194 SDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFEND 253
+ VVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFEND
Sbjct: 1 TSVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFEND 180
Query: 254 RTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVKARSQFKERSTATNV 313
RTISFIPPDG+FDLMTYRLSTQVKPLIWVEA+VEKHSKSRIEIMVKARSQFKERSTATNV
Sbjct: 181 RTISFIPPDGSFDLMTYRLSTQVKPLIWVEASVEKHSKSRIEIMVKARSQFKERSTATNV 360
Query: 314 EIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEA 373
EIELPVPVDA NPNVRTSMGSA+YAPEKDALIWKIRSFPGGKEYMLRAEF LPSIT EEA
Sbjct: 361 EIELPVPVDATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFHLPSITDEEA 540
Query: 374 TPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
TPERKAPIRVKFEIPYFTVSGIQVRYLK+IEKSGYQALPWVRYITMAGEYELRLI
Sbjct: 541 TPERKAPIRVKFEIPYFTVSGIQVRYLKVIEKSGYQALPWVRYITMAGEYELRLI 705
>TC218127 weakly similar to UP|AP47_CAEEL (P35602) Clathrin coat assembly
protein AP47 (Clathrin coat associated protein AP47)
(Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
(Clathrin assembly protein assembly protein complex 1
medium chain) (Uncoordinated protein 101), partial (17%)
Length = 603
Score = 259 bits (662), Expect(2) = 2e-80
Identities = 125/134 (93%), Positives = 132/134 (98%)
Frame = +1
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
MAGAASALFLLDIKGRVLIWRDYRGDV+ALDAERFFTKLIEKQAD Q+QDPVVHDNG++Y
Sbjct: 100 MAGAASALFLLDIKGRVLIWRDYRGDVSALDAERFFTKLIEKQADPQAQDPVVHDNGVTY 279
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
MF+QHSNVYLMIATR NCNAASLLFFLHR+VDVFKHYFEELEEESLRDNFVVVYELLDEI
Sbjct: 280 MFIQHSNVYLMIATRHNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEI 459
Query: 121 MDFGYPQYTEAKIL 134
MDFGYPQYTEA+IL
Sbjct: 460 MDFGYPQYTEAQIL 501
Score = 58.5 bits (140), Expect(2) = 2e-80
Identities = 27/30 (90%), Positives = 28/30 (93%)
Frame = +2
Query: 132 KILSEFIKTDAYRMEVTQRPPMAVTNAVSW 161
+ LSEFIKTDAYRMEVTQRPPMA TNAVSW
Sbjct: 494 RFLSEFIKTDAYRMEVTQRPPMAGTNAVSW 583
>TC205029
Length = 635
Score = 286 bits (732), Expect = 1e-77
Identities = 138/154 (89%), Positives = 149/154 (96%)
Frame = +1
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
MAGAASALFLLDIKGRVLIWRDYRGDVTA++AERFFTKLIEK+ D QSQDPVV+DNG++Y
Sbjct: 172 MAGAASALFLLDIKGRVLIWRDYRGDVTAVEAERFFTKLIEKEGDPQSQDPVVYDNGVTY 351
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
+F+QHSNV+LM+ATRQNCNAASLLFFLHR+VDVFKHYFEELEEESLRDNFV VYE LDEI
Sbjct: 352 LFIQHSNVFLMMATRQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVDVYESLDEI 531
Query: 121 MDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMA 154
MD GYPQYTEAKILSEFIKTDAYRMEVTQRPPMA
Sbjct: 532 MDLGYPQYTEAKILSEFIKTDAYRMEVTQRPPMA 633
>TC218128 weakly similar to UP|AP47_CAEEL (P35602) Clathrin coat assembly
protein AP47 (Clathrin coat associated protein AP47)
(Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
(Clathrin assembly protein assembly protein complex 1
medium chain) (Uncoordinated protein 101), partial (17%)
Length = 475
Score = 261 bits (667), Expect = 4e-70
Identities = 126/134 (94%), Positives = 133/134 (99%)
Frame = +1
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
MAGAASALFLLDIKGRVLIWRDYRGDV+ALDAERFFTKLIEKQAD Q+QDPVVHDNG++Y
Sbjct: 73 MAGAASALFLLDIKGRVLIWRDYRGDVSALDAERFFTKLIEKQADPQAQDPVVHDNGVTY 252
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
MF+QHSNVYLMIATRQNCNAASLLFFLHR+VDVFKHYFEELEEESLRDNFVVVYELLDEI
Sbjct: 253 MFIQHSNVYLMIATRQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEI 432
Query: 121 MDFGYPQYTEAKIL 134
MDFGYPQYTEA+IL
Sbjct: 433 MDFGYPQYTEAQIL 474
>TC206859 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly like protein,
complete
Length = 1644
Score = 256 bits (653), Expect = 2e-68
Identities = 150/451 (33%), Positives = 247/451 (54%), Gaps = 29/451 (6%)
Frame = +2
Query: 6 SALFLLDIKGRVLIWRDYRGDVTALDAERFFTKL-IEKQADAQSQDPVVHDNGISYMFVQ 64
S F+L +G +++RDYRG+V AE FF K+ + Q PV + +G++Y V+
Sbjct: 80 SQFFVLSQRGDNIVFRDYRGEVQKGSAEIFFRKVKFWEDGGLQEAPPVFNVDGVNYFHVK 259
Query: 65 HSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFG 124
+ + TR N + + +L L R+ V K Y L E+SLR NFV+VYELLDE++DFG
Sbjct: 260 VVGLLFVATTRVNTSPSFVLELLQRIARVIKDYLGILNEDSLRKNFVLVYELLDEVIDFG 439
Query: 125 YPQYTEAKILSEFIKTDAYRMEVTQRPPM----------------AVTNAVSWRSEGISY 168
Y Q T ++L ++ + ++ + PP+ AVT +V G
Sbjct: 440 YVQTTSTELLKSYVFNEPLVIDAARLPPLGPAAIFTQGTKRMPGIAVTKSVVATEPG-GR 616
Query: 169 KKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLL-EAQG- 226
K+ E+F+D++E ++I +S+G I+ S++ G ++M++YLSG PE +L LND + + +QG
Sbjct: 617 KREEIFVDIIEKISITFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNDDLSIGRSQGP 796
Query: 227 ----RTTKGK-AIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIW 281
R++ G + L+D FH+ VRL F+ DRT+S +PPDG F +M YRL+ + P
Sbjct: 797 AYGYRSSSGSGTVILDDCNFHESVRLDSFDIDRTLSLVPPDGEFPVMNYRLTQEFSPPFR 976
Query: 282 VEATVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPE- 340
+ A +E+ + E+++K ++F TA +++++P+P + G+ +
Sbjct: 977 INALIEEAGSLKAEVILKVSAEFPSSVTANTIKVQMPLPKCTSRVSFELEPGAVGQTTDF 1156
Query: 341 KDA---LIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQV 397
K+A L W +R GG E+ L A+ + T E P+ + F IP VS +QV
Sbjct: 1157KEANKRLEWSLRKIVGGSEHTLHAKLTFSQESHVNITKE-SGPVSMTFTIPMHNVSRLQV 1333
Query: 398 RYLKIIEKSG-YQALPWVRYITMAGEYELRL 427
+YL+I +KS ++ WVRY+T A Y R+
Sbjct: 1334KYLQIAKKSATHEPYRWVRYVTQANSYVARI 1426
>TC207417 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly like protein,
partial (96%)
Length = 1732
Score = 249 bits (637), Expect = 1e-66
Identities = 141/441 (31%), Positives = 239/441 (53%), Gaps = 22/441 (4%)
Frame = +1
Query: 9 FLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHD-NGISYMFVQHSN 67
F+L +G +++RDYRG+ AE FF K+ + DA+ P V + +G++Y V+ +
Sbjct: 124 FVLSQRGDNIVYRDYRGEAQKGSAETFFRKVKFWKEDAEGDAPPVFNIDGVNYFHVKVAG 303
Query: 68 VYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQ 127
+ + TR N + + +L L R+ V K Y L E+S R NFV+VYELLDE++DFGY Q
Sbjct: 304 LLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQ 483
Query: 128 YTEAKILSEFIKTDAYRMEVTQRPPM----------------AVTNAVSWRSEGISYKKN 171
T ++L ++ + ++ + PP+ A+T +V G K++
Sbjct: 484 TTSTEVLKSYVFNEPIVIDAARMPPLGPASIFMQGTKRMPGTAITKSVVANEPG-GRKRD 660
Query: 172 EVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKG 231
E+F+DV+E +++ NS+G I+ S++ G ++M++YL+G PE +L LN+ + + G
Sbjct: 661 EIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSG 840
Query: 232 KAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSK 291
A+ L+D FH+ V L F+ DRT+S +PP+G F +M YR++ KP + A +E+
Sbjct: 841 -AVILDDCNFHESVHLDSFDVDRTLSLVPPEGEFPVMNYRMTQPFKPPFRINALIEETGS 1017
Query: 292 SRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPE-KDA---LIWK 347
+ E+ +K R++F A V +++P+P G+ + + K+A L W
Sbjct: 1018LKAEVTIKVRAEFNSSINANTVLVQMPLPSFTSRVTFELEPGAVGHTTDFKEANKRLEWG 1197
Query: 348 IRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKS- 406
++ GG E+ LRA+ S + P+ + F +P + S +QV+YL+I +KS
Sbjct: 1198LKKVVGGSEHTLRAKLTF-SQELHGNIMKEAGPVSMTFTVPMYNASRLQVKYLQIAKKSK 1374
Query: 407 GYQALPWVRYITMAGEYELRL 427
+ WVRY+T A Y RL
Sbjct: 1375AHNPYRWVRYVTQANSYVARL 1437
>TC228311 homologue to UP|O23140 (O23140) AP47/50p, partial (59%)
Length = 1107
Score = 248 bits (633), Expect = 4e-66
Identities = 123/260 (47%), Positives = 174/260 (66%), Gaps = 5/260 (1%)
Frame = +2
Query: 172 EVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR---- 227
EVFLD+VESVN+L++S G ++R DV G + M+ +LSGMP+ KLGLND++ LE + +
Sbjct: 2 EVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIALEKEAQLKSR 181
Query: 228 -TTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATV 286
T GK+I+L+D+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V T+
Sbjct: 182 PTKSGKSIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTI 361
Query: 287 EKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIW 346
++ +SRIE+ VK +S F + A V +++PVP N + G A Y D L+W
Sbjct: 362 KELGRSRIEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFTVTSGRAKYNASIDCLVW 541
Query: 347 KIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKS 406
KIR FPG E L AE L S T E+ + R PI+++F++P FT SG++VR+LK+ EKS
Sbjct: 542 KIRKFPGQTESTLSAEVELISTTTEKKSWTR-PPIQMEFQVPMFTASGLRVRFLKVWEKS 718
Query: 407 GYQALPWVRYITMAGEYELR 426
GY + WVRYIT AG YE+R
Sbjct: 719 GYNTVEWVRYITKAGSYEIR 778
>CF806829
Length = 412
Score = 208 bits (529), Expect(2) = 2e-65
Identities = 103/107 (96%), Positives = 107/107 (99%)
Frame = -2
Query: 137 FIKTDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVESVNILVNSNGQIIRSDV 196
FIKTDAYRMEVTQ+PPMAVTNAVSWRSEGI++KKNEVFLDVVESVNILVNSNGQIIRSDV
Sbjct: 411 FIKTDAYRMEVTQKPPMAVTNAVSWRSEGINFKKNEVFLDVVESVNILVNSNGQIIRSDV 232
Query: 197 VGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQ 243
VGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGK+IDLEDIKFHQ
Sbjct: 231 VGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKSIDLEDIKFHQ 91
Score = 59.7 bits (143), Expect(2) = 2e-65
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -1
Query: 274 TQVKPLIWVEATVEKHSKSRIEIMVKARSQFK 305
+ VKPL+WVEA VEKHSKSRIEIMVKARSQFK
Sbjct: 97 SSVKPLVWVEAQVEKHSKSRIEIMVKARSQFK 2
>AW780639
Length = 385
Score = 195 bits (495), Expect = 4e-50
Identities = 96/128 (75%), Positives = 109/128 (85%)
Frame = +2
Query: 202 MRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFENDRTISFIPP 261
MRT SGMPECKLGLNDR LLEAQGRTTKGK+ID EDIKFHQCVRLAR ENDRTI++IP
Sbjct: 2 MRT*QSGMPECKLGLNDR*LLEAQGRTTKGKSIDWEDIKFHQCVRLARCENDRTITWIPA 181
Query: 262 DGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPV 321
DG+F++ TYRL T VKP++W EA +E+HS S+IEIMVKARSQFKERSTATN E E+ VP
Sbjct: 182 DGSFEIRTYRLETHVKPVVWEEAQIERHSISQIEIMVKARSQFKERSTATNAESEVAVPA 361
Query: 322 DAMNPNVR 329
DA P+ R
Sbjct: 362 DATKPDCR 385
>TC228313 homologue to UP|O23140 (O23140) AP47/50p, partial (43%)
Length = 862
Score = 171 bits (432), Expect = 8e-43
Identities = 83/190 (43%), Positives = 122/190 (63%)
Frame = +1
Query: 237 EDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEI 296
+D+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V T+++ ++R+E+
Sbjct: 1 DDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTIKELGRTRMEV 180
Query: 297 MVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKE 356
VK +S F + A V +++PVP + + + G A Y D L+WKIR FPG E
Sbjct: 181 NVKVKSVFGAKMFALGVVVKIPVPRHTAHTSFTVTSGRAKYNASIDCLVWKIRKFPGPTE 360
Query: 357 YMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRY 416
L AE L S E+ + R PI+++F++P FT SG++VR+LK+ EKSGY + WVRY
Sbjct: 361 PTLSAEIELISTMTEKKSSTR-PPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRY 537
Query: 417 ITMAGEYELR 426
IT AG YE+R
Sbjct: 538 ITKAGSYEVR 567
>TC231749 similar to UP|O76928 (O76928) CG3035-PA (Mu3 subunit of
clathrin-associated protein complex AP-3) (LD09732p)
(Clathrin-associated adaptor complex AP-3 medium chain),
partial (21%)
Length = 1011
Score = 133 bits (335), Expect = 1e-31
Identities = 91/336 (27%), Positives = 162/336 (48%), Gaps = 15/336 (4%)
Frame = +2
Query: 106 LRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIK-----------TDAYRMEVTQRPPMA 154
++DNF++VYELLDE++D G+P TE IL E I V+ P A
Sbjct: 5 IKDNFIIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPGA 184
Query: 155 VTNAVSWRSEGISYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKL 214
+ V WR+ Y NEV++D+VE ++ +N +G +++ ++ G +++ ++++G+P+ L
Sbjct: 185 TASLVPWRTADTKYANNEVYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTL 364
Query: 215 GLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLST 274
+ + L+D++FH CVR +E+++ +SF+PPDG F LM+YR+
Sbjct: 365 SFANPSI--------------LDDVRFHPCVRYRPWESNQILSFVPPDGRFKLMSYRVGK 502
Query: 275 QVKPLIWVEAT-VEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMG 333
I+V+ + R+ ++V R+ T NV ++ +P ++ ++ ++ G
Sbjct: 503 LKNTPIYVKPQFTSDGGRCRVSVLVGIRND--PGKTIDNVTVQFQLPSCILSADLSSNYG 676
Query: 334 SAAYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERK---APIRVKFEIPYF 390
K W I P K + L E ER +V F I
Sbjct: 677 IVNILANK-ICSWSIGRIPKDKAPSMSGTLVL------ETGLERLHVFPTFQVGFRIMGV 835
Query: 391 TVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELR 426
+SG+Q+ L ++ Y+ R +T AGE+E+R
Sbjct: 836 ALSGLQIDKLD-LKTVPYRFYKGFRALTRAGEFEVR 940
>TC205026 weakly similar to UP|AP54_YEAST (Q00776) Clathrin coat assembly
protein AP54 (Clathrin coat associated protein AP54)
(Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit)
(Clathrin assembly protein complex 1 medium chain),
partial (19%)
Length = 436
Score = 112 bits (280), Expect = 3e-25
Identities = 54/56 (96%), Positives = 55/56 (97%)
Frame = +1
Query: 308 STATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLRAEF 363
STATNVEIELPVPVDA NPNVRTSMGSA+YAPEKDALIWKIRSFPGGKEYMLRAEF
Sbjct: 268 STATNVEIELPVPVDATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEF 435
Score = 75.9 bits (185), Expect = 3e-14
Identities = 37/38 (97%), Positives = 38/38 (99%)
Frame = +3
Query: 270 YRLSTQVKPLIWVEATVEKHSKSRIEIMVKARSQFKER 307
YRLSTQVKPLIWVEA+VEKHSKSRIEIMVKARSQFKER
Sbjct: 3 YRLSTQVKPLIWVEASVEKHSKSRIEIMVKARSQFKER 116
>TC205024 similar to UP|AP47_CAEEL (P35602) Clathrin coat assembly protein
AP47 (Clathrin coat associated protein AP47) (Golgi
adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
(Clathrin assembly protein assembly protein complex 1
medium chain) (Uncoordinated protein 101), partial (11%)
Length = 651
Score = 109 bits (272), Expect = 3e-24
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = +1
Query: 376 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI
Sbjct: 1 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 159
>BE022116
Length = 169
Score = 92.8 bits (229), Expect = 3e-19
Identities = 48/56 (85%), Positives = 50/56 (88%)
Frame = +2
Query: 178 VESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKA 233
VESVNILVNSNGQIIRSDV+GALKM+TY SGMPEC LGLND VL EAQG TT GKA
Sbjct: 2 VESVNILVNSNGQIIRSDVIGALKMKTY*SGMPEC*LGLNDIVLFEAQG*TTMGKA 169
>TC206858 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly like protein,
partial (33%)
Length = 694
Score = 73.9 bits (180), Expect = 1e-13
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Frame = +2
Query: 293 RIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPE-KDA---LIWKI 348
+ E+++K ++F TA +++++P+P + G+ + K+A L W +
Sbjct: 38 KAEVILKVSAEFASSVTANTIKVQMPLPKCTSRVSFELEPGAVGQTTDFKEANKRLEWSL 217
Query: 349 RSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG- 407
R GG E+ LRA+ + T E P+ + F IP VS +QV+YL+I +KS
Sbjct: 218 RKIVGGSEHTLRAKLTFSQESPVNVTKE-SGPVSMTFTIPMHNVSRLQVKYLQIAKKSAT 394
Query: 408 YQALPWVRYITMAGEYELRL 427
++ WVRY+T A Y R+
Sbjct: 395 HEPYRWVRYVTQANSYVARI 454
>AW101280
Length = 422
Score = 57.4 bits (137), Expect(2) = 2e-13
Identities = 27/96 (28%), Positives = 52/96 (54%)
Frame = +1
Query: 188 NGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRL 247
+G +++ ++ G +++ + +SG P+ L + +L D++FH CVR
Sbjct: 139 DGGLVKCEIYGEVQVNSRISGFPDLTLSFTNPSILN--------------DVRFHPCVRF 276
Query: 248 ARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVE 283
+E+ + +SF+PPDG F LM+YR+ I+V+
Sbjct: 277 RPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVK 384
Score = 36.2 bits (82), Expect(2) = 2e-13
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 152 PMAVTNAVSWRSEGISYKKNEVFLDVVESVNILVNSN 188
P A + V WR+ Y NEV++D+VE ++ ++NS+
Sbjct: 3 PGAAASCVPWRTAEPKYSNNEVYVDLVEEMDAIINSH 113
>TC205027 similar to UP|AP47_CAEEL (P35602) Clathrin coat assembly protein
AP47 (Clathrin coat associated protein AP47) (Golgi
adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
(Clathrin assembly protein assembly protein complex 1
medium chain) (Uncoordinated protein 101), partial (7%)
Length = 862
Score = 67.8 bits (164), Expect = 9e-12
Identities = 31/32 (96%), Positives = 32/32 (99%)
Frame = +1
Query: 397 VRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
VRYLK+IEKSGYQALPWVRYITMAGEYELRLI
Sbjct: 397 VRYLKVIEKSGYQALPWVRYITMAGEYELRLI 492
>BG316014
Length = 196
Score = 67.0 bits (162), Expect = 2e-11
Identities = 38/65 (58%), Positives = 45/65 (68%)
Frame = +2
Query: 169 KKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRT 228
KKNEVFLDVV+SV IL SNGQIIRSD V ALK+ Y+ MPE KL N ++AQ +
Sbjct: 2 KKNEVFLDVVDSVYILATSNGQIIRSDFVPALKISPYMDRMPEYKLLFNVL*WMDAQCGS 181
Query: 229 TKGKA 233
+ G A
Sbjct: 182 STGMA 196
>BI321645
Length = 422
Score = 65.9 bits (159), Expect = 3e-11
Identities = 41/131 (31%), Positives = 62/131 (47%)
Frame = +1
Query: 8 LFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISYMFVQHSN 67
+FL+ G V++ + G +F + D+ Q PV+ V
Sbjct: 16 IFLVSDAGEVMLEKQLTGHRVDRSICAWFWEQAISLGDSFKQQPVIASPTHYIFQVFRDG 195
Query: 68 VYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQ 127
+ + T+ + FL RV +V YF L E+ ++DNFV+VYELLDE++D G+P
Sbjct: 196 ITFLGCTQVEMPPLMAIEFLCRVANVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPL 375
Query: 128 YTEAKILSEFI 138
TE IL E I
Sbjct: 376 TTEPSILREMI 408
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,811,891
Number of Sequences: 63676
Number of extensions: 180465
Number of successful extensions: 783
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of query: 428
length of database: 12,639,632
effective HSP length: 100
effective length of query: 328
effective length of database: 6,272,032
effective search space: 2057226496
effective search space used: 2057226496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0076a.11