TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0075.5
         (667 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...   469  e-132
NP004897 gag-protease polyprotein                                     459  e-129
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete             451  e-127
CF920770                                                              115  8e-26
BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine m...    63  4e-10
BE805076 weakly similar to GP|9294121|dbj copia-like retrotransp...    47  2e-05
CF922727                                                               44  2e-04
TC228567                                                               40  0.004
TC232981 UP|Q9LLR0 (Q9LLR0) Carboxyl transferase alpha subunit  ...    36  0.048
TC232747                                                               35  0.11
TC228842                                                               34  0.18
TC223814                                                               33  0.41
BF595551 similar to GP|16974544|gb| At2g03500/T4M8.7 {Arabidopsi...    32  0.69
TC228810 weakly similar to UP|Q9LIQ9 (Q9LIQ9) Arabidopsis thalia...    32  0.90
BE802024                                                               31  2.0
BU964406                                                               30  2.6
CA852083                                                               30  2.6
BE659348 weakly similar to PIR|JC7809|JC78 sulfakinin receptor p...    30  2.6
TC213279 similar to UP|TRSF_DROHY (Q23949) Female-specific trans...    30  3.4
TC208034 weakly similar to UP|Q9LPJ0 (Q9LPJ0) F6N18.12, partial ...    30  3.4

>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score =  469 bits (1207), Expect = e-132
 Identities = 258/538 (47%), Positives = 341/538 (62%), Gaps = 54/538 (10%)
 Frame = +1

Query: 10  PPILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIAST-----TELKPEDKWTKK 64
           PPILDGTNY+YWKARM+ FLKS+DS  WKA++KGW+HP +  T      ELKPE+ WTK+
Sbjct: 37  PPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKE 216

Query: 65  EDDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTT 124
           ED+ ALGNSKALN +FNGVDKN+FRLINTCTVAK+AWEILKT HEGTSKV+MS+LQLL T
Sbjct: 217 EDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLAT 396

Query: 125 QFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAIEE 184
           +FE +KM E+E I++FHM I ++AN+  ALGE M++EKL RKILRSLPKRFDMKVTAIEE
Sbjct: 397 KFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEE 576

Query: 185 AQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTDANIAEAVS 244
           AQDI N++VDELIGSLQTFE+ L+ R+EKK+K++ FVSN E +ED+ + DTD  +  AV 
Sbjct: 577 AQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVV 756

Query: 245 LL----NKALKSLGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAI---------HVK 291
           LL    NK L  + R    +V +   D  K +E+Q K   +   +K I         H+K
Sbjct: 757 LLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDEKPSHSKGIQCHGCEGYGHIK 936

Query: 292 -----------------------------------ALIGKCYSDAESSDGDEEELVETYK 316
                                              AL G+  S  +SSD D E    T+ 
Sbjct: 937 AECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSE---ITFD 1107

Query: 317 LLLAKWEESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAK 376
            L   + E C+  EK       ++ ++ QL+          K I+ L  E E  +   ++
Sbjct: 1108ELAISYRELCIKSEK-------ILQQEAQLK----------KVIANLEAEKEAHEEEISE 1236

Query: 377 LQEEVTLLNSKLEGMKKSIRMMNKSTNVLEEILEVGKTVGDMEGIGFSYKSANKSASSE- 435
           L+ EV  LNSKLE M KSI+M+NK +++L+E+L++GK VG+  G+GF++KSA ++  +E 
Sbjct: 1237LKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSAGRTTMTEF 1416

Query: 436 KQTKQPMSDPMLHHSVRHVYPQFRKSKKSTWRCHHCGKLGHIRPYCYKLYGYPQSHDQ 493
              K      M  H  RH   Q +KSK+  WRCH+CGK GHI+P+CY L+G+P    Q
Sbjct: 1417VPAKNSTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQ 1590


>NP004897 gag-protease polyprotein
          Length = 1923

 Score =  459 bits (1181), Expect = e-129
 Identities = 254/538 (47%), Positives = 337/538 (62%), Gaps = 54/538 (10%)
 Frame = +1

Query: 10  PPILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTE-----LKPEDKWTKK 64
           PPILDGTNY+YWKARM+ FLKS+DS  WKA++K W+HP +  T       LKPE+ WTK+
Sbjct: 37  PPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKE 216

Query: 65  EDDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTT 124
           ED+ ALGNSKALN +FNGVDKN+FRLINTCTVAK+AWEILKT HEGTSKV+MS+LQLL T
Sbjct: 217 EDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLAT 396

Query: 125 QFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAIEE 184
           +FE +KM E+E I++FHM I ++AN+  ALGE M++EKL RKILRSLPKRFDMKVTAIEE
Sbjct: 397 KFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEE 576

Query: 185 AQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTDANIAEAVS 244
           AQDI N++VDELIGSLQTFE+ L+ R+EKK+K++ FVSN E +ED+ + DTD  +  AV 
Sbjct: 577 AQDICNLRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVV 756

Query: 245 LL----NKALKSLGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAI---------HVK 291
           LL    NK L  + R    +V +   D  K +E+Q +   +   +K           H+K
Sbjct: 757 LLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIK 936

Query: 292 -----------------------------------ALIGKCYSDAESSDGDEEELVETYK 316
                                              AL G+  S  +SSD D E    T+ 
Sbjct: 937 AECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSE---ITFD 1107

Query: 317 LLLAKWEESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAK 376
            L   + E C+  EK       ++ ++ QL+          K I+ L  E E  +   ++
Sbjct: 1108ELATSYRELCIKSEK-------ILQQEAQLK----------KVIANLEAEKEAHEEEISE 1236

Query: 377 LQEEVTLLNSKLEGMKKSIRMMNKSTNVLEEILEVGKTVGDMEGIGFSYKSANKSASSE- 435
           L+ EV  LNSKLE M KSI+M+NK +++L+E+L++GK VG+  G+GF++KSA +   +E 
Sbjct: 1237LKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSAGRITMTEF 1416

Query: 436 KQTKQPMSDPMLHHSVRHVYPQFRKSKKSTWRCHHCGKLGHIRPYCYKLYGYPQSHDQ 493
              K      M  H  RH   Q +KSK+  WRCH+CGK GHI+P+CY L+G+P    Q
Sbjct: 1417VPAKISTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQ 1590


>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score =  451 bits (1160), Expect = e-127
 Identities = 252/534 (47%), Positives = 338/534 (63%), Gaps = 50/534 (9%)
 Frame = +1

Query: 10  PPILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTT-----ELKPEDKWTKK 64
           PPILDG+NY+YWKARM+ FLKS+DS  WKA++KGW+HP +  T      ELKPE+ WTK+
Sbjct: 37  PPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKE 216

Query: 65  EDDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTT 124
           ED+ ALGNSKALN +FNGVDKN+FRLINTCTVAK+AWEILK  HEGTSKV+MS+LQLL T
Sbjct: 217 EDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLAT 396

Query: 125 QFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAIEE 184
           +FE +KM E+E I++FHM I ++AN+  ALGE +++EKL RKILRSLPKRFDMKVTAIEE
Sbjct: 397 KFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEE 576

Query: 185 AQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTDANIAEAVS 244
           AQDI N++VDELIGSLQTFE+ L+ R+EKK+K++ FVSN E +ED+ + DTD  +  AV 
Sbjct: 577 AQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVV 756

Query: 245 LL----NKALKSLGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAI------------ 288
           LL    NK L  + +    +V +   D  K +++Q +   +   +K I            
Sbjct: 757 LLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHII 936

Query: 289 -----HVKAL---IGKCYSDAES---SDGDEE--------ELVE---------TYKLLLA 320
                H+K     +  C SD ES   SD D +        E  E         T+  L A
Sbjct: 937 AECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELAA 1116

Query: 321 KWEESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEE 380
            + + C+  EK       ++ ++ QL+          K I+ L  E E  +   ++L+ E
Sbjct: 1117SYRKLCIKSEK-------ILQQEAQLK----------KVIADLEAEKEAHKEEISELKGE 1245

Query: 381 VTLLNSKLEGMKKSIRMMNKSTNVLEEILEVGKTVGDMEGIGFSYKSANKSASSE-KQTK 439
           V  LNSKLE M KSI+M+NK ++ L+E+L +GK  G+  G+GF+ KSA ++  +E    K
Sbjct: 1246VGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAK 1425

Query: 440 QPMSDPMLHHSVRHVYPQFRKSKKSTWRCHHCGKLGHIRPYCYKLYGYPQSHDQ 493
                 M  H  RH   Q +KSK+  WRCH+CGK GHI+P+CY L+G+P    Q
Sbjct: 1426NRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQ 1587


>CF920770 
          Length = 581

 Score =  115 bits (287), Expect = 8e-26
 Identities = 57/157 (36%), Positives = 90/157 (57%)
 Frame = -2

Query: 51  STTELKPEDKWTKKEDDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEG 110
           S T  KP D+W++++      N KA N+I + +  + +  ++ C  AKE W+ L+  HEG
Sbjct: 484 SITIEKPRDRWSEEDRKRVQYNLKAKNIITSALGMDEYFRVSNCKSAKEMWDTLRLTHEG 305

Query: 111 TSKVRMSKLQLLTTQFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRS 170
           T+ V+ S++  LT ++E  +MN +E+I     R   + N   ALG+    E L  K+LR 
Sbjct: 304 TTDVKRSRINALTHEYELFRMNTNENIQSMQKRFTHIVNHLAALGKEFQNEDLINKVLRC 125

Query: 171 LPKRFDMKVTAIEEAQDISNIKVDELIGSLQTFEMSL 207
           L + +  KVTAI E++D+SN+ +  L G LQ  EM L
Sbjct: 124 LSREWQPKVTAISESRDLSNMSLATLFGKLQEHEMEL 14


>BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine max}, partial
           (7%)
          Length = 340

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 34/88 (38%), Positives = 54/88 (60%), Gaps = 4/88 (4%)
 Frame = +2

Query: 194 DELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTDANIAEAVSLL----NKA 249
           DEL+GSLQTFE+ L+ R+EKK+K++ F+SN E +E + + DTD  +  A  LL    +K 
Sbjct: 2   DELMGSLQTFELGLSDRAEKKSKNLAFMSNDEGEEGEYDLDTDEGLTNAGVLLGKQFSKV 181

Query: 250 LKSLGRMSNTNVLDNVSDNVKNTEFQLK 277
           +  + R    +V     D  K++++Q K
Sbjct: 182 MNRIDRRQKPHVQSRRGDVRKSSKYQRK 265


>BE805076 weakly similar to GP|9294121|dbj copia-like retrotransposable
           element {Arabidopsis thaliana}, partial (2%)
          Length = 388

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 40/91 (43%)
 Frame = +1

Query: 11  PILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPEDKWTKKEDDEAL 70
           PI +G NYD+W+ +M  +L S D   W  + +G+  P   S      E +  K +     
Sbjct: 133 PIFNGENYDFWRVKMETYLSSQD--LWDIVEEGFTIPADTSALNASQEKELKKNKQK--- 297

Query: 71  GNSKALNVIFNGVDKNMFRLINTCTVAKEAW 101
            NSK L  +       +F  I     AKEAW
Sbjct: 298 -NSKTLFTLQQAETDPIFPRIMGAKTAKEAW 387


>CF922727 
          Length = 791

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
 Frame = -2

Query: 11  PILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPEDKWTKKEDDEAL 70
           PIL G NY  WK R+++ L  MD       ++  + PVI  T+E    D + K E     
Sbjct: 430 PILKGDNYKVWKERVLLHLGWMDI---DYAIRKDEPPVITETSEPDVVDLYEKWE----- 275

Query: 71  GNSKALNVIFNGVDKNMFRLI-NTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTTQFETM 129
             S  L+V+F  +  N+   I  +     +  ++LK   E  +    S    L  QF ++
Sbjct: 274 -RSNRLSVMF--IKTNISTSIWGSVDQHDKVRDLLKAIDERFTTSEKSLASTLIMQFSSI 104

Query: 130 KMNEDESIYEFHMRIRDL 147
           K+     + E  MR+RD+
Sbjct: 103 KLTGTRGVREHIMRLRDI 50


>TC228567 
          Length = 1531

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 72/358 (20%), Positives = 141/358 (39%), Gaps = 14/358 (3%)
 Frame = +2

Query: 67  DEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTTQF 126
           D A+GN++        ++K    L       KEAW  ++ AH    +V+  +L  +  + 
Sbjct: 17  DIAIGNAEKTIAASKQIEKAAEDLTAEFIATKEAWNSMRPAH---*EVKQQRL*AVDQES 187

Query: 127 ETMKMNEDESIYEFHMRIRDLANSTFALGEPM-SEEKLARKILRSLPKRFDMKVTAIEEA 185
             +K+ E E + E   R+ +   ST  L   + S   L   +   L    + KV   EE 
Sbjct: 188 NNLKL-ELEQV*EELQRLNEQVLSTRVLKSKLESASSLLHGLKAELTAYMESKVN--EEF 358

Query: 186 QDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDED------QREKDTDANI 239
                 +V+EL  +++     +N     +  S++  S  EE++       Q E+   A +
Sbjct: 359 YKEQKEEVEELKLNIEKATSDVN---RLRVASVSLKSKLEEEKSVLASLKQSEEKASAAV 529

Query: 240 AEAVSLLNKALKSLG--RMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAIHVKALIGKC 297
               + L K+  ++   +M      + +++  K  +   K   E D  K++   A     
Sbjct: 530 VNLQAELEKSRSAIAFIQMKENEAREMMTELPKKLQ---KASQEADEAKSLAQAAQAELI 700

Query: 298 YSDAESSDGDEEELVETYKLLLAKWE-ESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEE 356
            +  E      +       LL A+ E E+    E + ++    + EK +    N + ++ 
Sbjct: 701 EAQEEVEQAKAKSSTLESSLLAAQKEIEAAKVAEMLARDAITAL-EKSESAKGNKNDKDS 877

Query: 357 VKTISKLREENEKLQITNAKLQEEVTLLNSKLEGMKKSIRMMN----KSTNVLEEILE 410
              ++   EE  +L     K +E+    N+++E     I++      +S   LEE+ E
Sbjct: 878 SSMVTLTLEEYHELSRRAYKAEEQA---NARIEAATSQIQIARESELRSLEKLEELNE 1042



 Score = 38.1 bits (87), Expect = 0.013
 Identities = 62/274 (22%), Positives = 114/274 (40%), Gaps = 3/274 (1%)
 Frame = +2

Query: 117 SKLQLLTTQFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFD 176
           SKL+   +   ++K +E+++         +L  S  A+     +E  AR+++  LPK+  
Sbjct: 458 SKLEEEKSVLASLKQSEEKASAAVVNLQAELEKSRSAIAFIQMKENEAREMMTELPKKLQ 637

Query: 177 MKVTAIEEAQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTD 236
                 +EA+ ++     ELI + +  E       + KAKS T  S+    + + E    
Sbjct: 638 KASQEADEAKSLAQAAQAELIEAQEEVE-------QAKAKSSTLESSLLAAQKEIEA--- 787

Query: 237 ANIAEAVSLLNKALKSLGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAIHVKALIGK 296
           A +AE   L   A+ +L +  +     N  D+       L++ HE           L  +
Sbjct: 788 AKVAE--MLARDAITALEKSESAKGNKNDKDSSSMVTLTLEEYHE-----------LSRR 928

Query: 297 CYSDAESSDGDEEELVETYKLLLAKWEESCMYGEKMRKEVKDLIAEKKQLQ--SNNSSLQ 354
            Y   E ++   E    T ++ +A+ E      EK+ +  ++L   ++ L+  + NS   
Sbjct: 929 AYKAEEQANARIE--AATSQIQIAR-ESELRSLEKLEELNEELSVRRESLKIATGNSEKA 1099

Query: 355 EEVKTISKLREENE-KLQITNAKLQEEVTLLNSK 387
            E     KL  E+E +      K QE+ T LN +
Sbjct: 1100NE----GKLAVEHELRTWRAEQKQQEKATELNEQ 1189


>TC232981 UP|Q9LLR0 (Q9LLR0) Carboxyl transferase alpha subunit  , complete
          Length = 2799

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 64/296 (21%), Positives = 124/296 (41%), Gaps = 24/296 (8%)
 Frame = +3

Query: 118  KLQLLTTQFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDM 177
            K  +  T  E  KMN +E +    ++ R +    F  G P+  ++ A        K+ D+
Sbjct: 1452 KKAIKETMDELTKMNTEELLKHRMLKFRKIGG--FQEGIPIDPKRKANM------KKRDL 1607

Query: 178  KVTAIEEAQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTDA 237
             +  I +A+    ++V++L    Q  E        K++  +    + +E   Q  ++ D 
Sbjct: 1608 SIAKIPDAE--LEVEVEKL--KQQVLEA-------KESSPVPPKLDLDEMLKQLAREVDL 1754

Query: 238  NIAEAVS---LLNKALKSLGRMSNTNVLDNVSDNVKNTEFQ-LKDKHENDTTKAIHVKAL 293
              +EAV    L +  LK    +S  N  + + D +   + + L+ + E     A +   L
Sbjct: 1755 EYSEAVKATGLTDSLLKLREEVSKANADNQIVDPLLEGKIEKLRVEFEQQLRAAPNYGRL 1934

Query: 294  IGKCYSDAES------SDGDEEELVETYKLLLAKWEESCMYGEKMRKEVKDLIAEKKQLQ 347
              K    +E       SDG +     T+K  L K  ++ +   K+R+  + L AE K + 
Sbjct: 1935 QNKLNYLSELCKVKLLSDGKKNNEAVTFKQELKKKIDNALSDPKIRETFEALKAEIKGVG 2114

Query: 348  SNNSS------------LQEEVKTISKLRE--ENEKLQITNAKLQEEVTLLNSKLE 389
            ++++S              +EVK + +++E  EN+   + N+    +  +L  KLE
Sbjct: 2115 ASSASDLDDELKKKIIEFIKEVKEVKEVKEVIENQIESLVNSSDDIKSKILQLKLE 2282


>TC232747 
          Length = 681

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
 Frame = +3

Query: 316 KLLLAKWEESCMYGE----KMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQ 371
           +LL+AK +E     +    ++R E   L+ ++K+ + N          +S LREENE LQ
Sbjct: 15  ELLIAKTKEVAAKSDAELGQVRSERNKLVEKEKEREGN----------VSVLREENEALQ 164

Query: 372 ITNAKLQEEVTLLNSKLE 389
              AK ++E   LN+K+E
Sbjct: 165 GMLAKARKESKDLNAKVE 218



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
 Frame = +3

Query: 288 IHVKALIGKCYSDAESSDGD-------EEELVETYK-----LLLAKWEESCMYG--EKMR 333
           + ++ LI K    A  SD +         +LVE  K     + + + E   + G   K R
Sbjct: 6   VKLELLIAKTKEVAAKSDAELGQVRSERNKLVEKEKEREGNVSVLREENEALQGMLAKAR 185

Query: 334 KEVKDLIAEKKQLQSNNSSLQEEVKTIS-------KLREENEKLQITNAKLQEEVTLLNS 386
           KE KDL A+ +   SN++     +KT +       K R  +E +   +    EE+     
Sbjct: 186 KESKDLNAKVEVWCSNSNKALSLLKTTAAALVCQHKERGGDEVVAAADENPVEEIQPYAQ 365

Query: 387 KLEGMKKSIRMMNKST-NVLEEILEVGKTVGD 417
           +L+ +KK+ +  ++   ++ ++++ + K+V +
Sbjct: 366 ELDAIKKAFKTKDEMVDDMKQQLVSLNKSVAE 461


>TC228842 
          Length = 1023

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 26/90 (28%), Positives = 47/90 (51%), Gaps = 9/90 (10%)
 Frame = +2

Query: 330 EKMRK--------EVKDLIAEKKQLQSNNSS-LQEEVKTISKLREENEKLQITNAKLQEE 380
           EKMR+        E+  ++  +K L+ + +  L + V+ +S+LREE +KL+ +   LQE+
Sbjct: 335 EKMRRDRLNDRFMELGSILDPRKPLKMDKAVILSDAVRVVSQLREEAQKLRESTENLQEK 514

Query: 381 VTLLNSKLEGMKKSIRMMNKSTNVLEEILE 410
           +  L  +    K  +R   +   V +E LE
Sbjct: 515 INALKDE----KNELRDEKQRLKVEKENLE 592


>TC223814 
          Length = 607

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 47/205 (22%), Positives = 73/205 (34%), Gaps = 1/205 (0%)
 Frame = +1

Query: 15  GTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPEDKWTKKEDDEALGNSK 74
           G NYD WK R++    +     W  +  G   P+     E  P   WTK    +    SK
Sbjct: 7   GQNYDNWKQRIIELFDACHIDMWDVVENGNYIPIDEKGGE-NPRSAWTKDHQTKYFLYSK 183

Query: 75  ALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTTQFETMKMNED 134
           A N           R  N C    +   I            M+ L+ L+   +    N D
Sbjct: 184 ARNT----------RPSNNCLDNSKVQNI------------MNNLRSLSKT*D----NHD 285

Query: 135 ESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAIEEAQDISNIKVD 194
           + I                            KIL+SL  +    V A+ +++D+ ++ V+
Sbjct: 286 DHI---------------------------TKILQSLLIQ*RP*VIALCDSKDLKSLPVE 384

Query: 195 ELIGSLQTFEMSL-NGRSEKKAKSI 218
           E  G+LQ  E+ L     ++K K I
Sbjct: 385 EFDGTLQVHELELMEDEGQRKGKFI 459


>BF595551 similar to GP|16974544|gb| At2g03500/T4M8.7 {Arabidopsis thaliana},
           partial (10%)
          Length = 418

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 344 KQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSKLEGMK----KSIRMMN 399
           + L +NN+        +S+L +E  K+     +L   + LLN  +  +K    K  R+  
Sbjct: 135 RHLSANNNHPATLRDFLSRLEDELRKIHAFKRELPLSMLLLNDAISVLKVESQKCCRVAR 314

Query: 400 KSTNVLEEILEVGKTVGD 417
            S  VLEE + + K +GD
Sbjct: 315 DSPPVLEEFIPLKKELGD 368


>TC228810 weakly similar to UP|Q9LIQ9 (Q9LIQ9) Arabidopsis thaliana genomic
           DNA, chromosome 3, BAC clone:F14O13, partial (30%)
          Length = 1277

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
 Frame = +3

Query: 343 KKQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSKL---EGMKKSIRMMN 399
           +KQL++    +    K +S L ++   LQ T   LQEE  +L SKL    G+ KSI    
Sbjct: 51  EKQLENAKEEISSYRKKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIENQT 230

Query: 400 KSTNV 404
              +V
Sbjct: 231 SKRDV 245


>BE802024 
          Length = 267

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/87 (25%), Positives = 45/87 (51%)
 Frame = +3

Query: 333 RKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSKLEGMK 392
           +  V+++  EK+QL+ +   L E+             LQ+ N   ++EVTL  S  +   
Sbjct: 18  KDHVREMKREKEQLKRDKRHLLEQ-------------LQVKN---EQEVTLRKSVEKLEA 149

Query: 393 KSIRMMNKSTNVLEEILEVGKTVGDME 419
           K+ +  ++  N+   ++++ KTVG++E
Sbjct: 150 KASKEESEKMNLTTTVVQLKKTVGELE 230


>BU964406 
          Length = 447

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +3

Query: 427 SANKSASSEKQTKQPMSDPMLHHSVRHVYPQFRKSKKSTWRCHHCGKLGHIRPYCYKLYG 486
           S + S SS  Q   P S+P++  +        ++ ++ST  CH+C + GH   YC     
Sbjct: 36  SFSHSPSSSSQAHSPQSNPLIPANC--CLELGKRMQQST--CHNCDQRGHWSYYC----- 188

Query: 487 YPQSHDQPRTNPQVAPTRKEWKPSGLK 513
                  P+T P  +P +    PS  K
Sbjct: 189 ---PSKSPKTKP-FSPGKDSTVPSNKK 257


>CA852083 
          Length = 829

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 35/179 (19%), Positives = 70/179 (38%), Gaps = 15/179 (8%)
 Frame = +1

Query: 411 VGKTVGDMEGIGFSYKSANKSASSEKQTKQPMSDPMLHHSVR-HVYPQFRKSKKSTWR-- 467
           +G    +M+    S K +N  +  E++ + P + P    S    V+    K+ +  W+  
Sbjct: 160 LGTATTNMQERAKSNKRSNAGSDEEEEARDPNAVPTDFTSREAKVWEAKSKATERNWKKR 339

Query: 468 ------CHHCGKLGHIRPYCYKLYGYPQSHDQ-----PRTNPQVAPTRKEWKPSGLKEKE 516
                 C  CG+ GH    C    G  +         P  +  V     E   S +++  
Sbjct: 340 KEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVRALFTEKVLSKIEKDV 519

Query: 517 KKEIVKAPRHFLMTNKD-VALLKSQSSGVDVMKEWRKKFVAASSLEGSNAPSTVHASIG 574
             +I    +  +++ KD + L K   +G  + +E  ++  ++S +  S +P  V   +G
Sbjct: 520 GCKIKMDEKFIIVSGKDRLILAKGVDAGHKIREEGDQRGSSSSQMTQSRSPEEVLLVLG 696


>BE659348 weakly similar to PIR|JC7809|JC78 sulfakinin receptor protein
           DSK-R1 - fruit fly (Drosophila melanogaster), partial
           (6%)
          Length = 770

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 468 CHHCGKLGHIRPYCYKLYGYP 488
           C +C ++GH +  CY ++G+P
Sbjct: 383 CSYCKRVGHTQDTCYSIHGFP 321


>TC213279 similar to UP|TRSF_DROHY (Q23949) Female-specific transformer
           protein, partial (11%)
          Length = 481

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 19/62 (30%), Positives = 33/62 (52%)
 Frame = +2

Query: 328 YGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSK 387
           YGE+   ++  L  E+ +L S N + +EE+K   KL  E + L+   A   E++  L  +
Sbjct: 194 YGEESATKIAALQRERDELVSENVARKEEIK---KLTAELDGLRSDGADKSEKIEELQRE 364

Query: 388 LE 389
           +E
Sbjct: 365 VE 370


>TC208034 weakly similar to UP|Q9LPJ0 (Q9LPJ0) F6N18.12, partial (46%)
          Length = 1183

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +3

Query: 323 EESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLRE---ENEKLQITNAKLQE 379
           +E   + +   ++++  +AEK+Q          E   + +LRE   E EK    NA+L+ 
Sbjct: 357 DEIDQFLQAQEEQLRRALAEKRQRHYRTLLRAAEESVLRRLREKEAELEKATRHNAELEA 536

Query: 380 EVTLLNSKLEGMKKSIRMMNKSTNVLEEILEVGKTVGDMEGIG 422
             T L+ + +  +   +    +   L+  L+    +GD E  G
Sbjct: 537 RATQLSVEAQLWQARAKAQEATAAALQAQLQQAMMIGDGENGG 665


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.311    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,797,531
Number of Sequences: 63676
Number of extensions: 330964
Number of successful extensions: 1684
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of query: 667
length of database: 12,639,632
effective HSP length: 104
effective length of query: 563
effective length of database: 6,017,328
effective search space: 3387755664
effective search space used: 3387755664
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)