TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0075.14
         (356 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit...    82  4e-16
TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), p...    39  0.005
TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980...    37  0.010
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm...    37  0.018
TC210984                                                               28  4.9
CA800051                                                               28  6.4
TC204588 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosida...    28  6.4
TC215320 homologue to UP|Q6Z1N4 (Q6Z1N4) Type 1 membrane protein...    28  6.4
TC215319 similar to UP|Q6Z1N4 (Q6Z1N4) Type 1 membrane protein-l...    28  6.4
TC232154 weakly similar to GB|AAF86996.1|9295690|AC005292 F26F24...    28  8.3

>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
           ribosomal protein, partial (24%)
          Length = 689

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 66/208 (31%), Positives = 100/208 (47%), Gaps = 14/208 (6%)
 Frame = +3

Query: 100 LQRILQVSEQRGFPGMIGSIDCMHWEWKNCPKAWEGQFTRGDKGTTTVILEAVASHDLWI 159
           +Q ++Q+ E RGF  M+GSID +HW+ K C  AW+GQ+  GD G  T++L+ V S  L I
Sbjct: 12  IQYLMQICEIRGFQSMLGSIDYLHWK*KTCLVAWKGQYCHGD-GPPTIMLKVVVSQYLRI 188

Query: 160 WHAFFGCPGTLNDINVLDRSPVFDDVEQGKAPTVSFIVNQRP-----YNMAYYLA--DGI 212
            HA+ G  G+ N+INVL+ S V      G++P  +      P      +  +YL+  D  
Sbjct: 189 *HAYLGVEGSNNNINVLNESCV*RRY-GGRSPYCTICS**NPI*HGVLSDIWYLSRLDDA 365

Query: 213 YPSYPTFVKSIRLPQSEPDKLFAQVQERCRKDIERAFGVLQARFKIIREPARLWDIADLG 272
              +P  ++S +       K+   +    +K     +      F ++R     W    L 
Sbjct: 366 CEDHPKAIRS*K-------KIVYSISRSNKKGSHLKY------FNLVRN--YTWSCVWLE 500

Query: 273 -------IIMRSCIILHNMIVEDERDTF 293
                    M  CIILHNMIV+DE  T+
Sbjct: 501 HEHISSIYYMYVCIILHNMIVKDEPHTY 584


>TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), partial (50%)
          Length = 968

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
 Frame = +1

Query: 203 NMAYYLADGIYPSYPTFVKSI------------RLPQSEPDKLFAQVQERCRKDIERAFG 250
           N  Y+L D  Y + P F+                 PQ+  + LF       +  IER+FG
Sbjct: 472 NGKYFLVDAGYTNGPGFLTPY*RTRYHRNEWIGNTPQNYKE-LFNLRHASAKNVIERSFG 648

Query: 251 VLQARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDER 290
           VL+ R+ I+R P+  +DI     I+ +C +L N I ++++
Sbjct: 649 VLKKRWSILRTPS-FFDIKTQIRIINTCFMLRNFIRDEQQ 765


>TC234723 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980), partial
           (24%)
          Length = 837

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 34/128 (26%), Positives = 54/128 (41%), Gaps = 13/128 (10%)
 Frame = +2

Query: 206 YYLADGIYPSYPTFVK-------------SIRLPQSEPDKLFAQVQERCRKDIERAFGVL 252
           YY+ D  Y + P FV              S   PQ +  +LF Q     R  I+R FG+L
Sbjct: 143 YYIVDSKYQNVPGFVAPYSSTPYYSKEFLSDYHPQ-DASELFNQRHSLLRHVIDRTFGIL 319

Query: 253 QARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDERDTFAQRWTDFEQSGEGGSSTPQ 312
           +ARF I+           + +++ +C  LHN I  ++ D +  +   +E+       +  
Sbjct: 320 KARFPILMSAPSYPLQTQVKLVVAAC-ALHNYIRREKPDDWLFKM--YEEGSFPMEESQP 490

Query: 313 PYSTEVLP 320
           P   EV P
Sbjct: 491 PLEMEVPP 514


>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
           partial (45%)
          Length = 973

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 26/97 (26%), Positives = 47/97 (47%), Gaps = 12/97 (12%)
 Frame = +1

Query: 206 YYLADGIYPSYPTFVKSIR-----LPQSEPD-------KLFAQVQERCRKDIERAFGVLQ 253
           +YL D  YP++  F+ S       LPQ           ++F       +  IERAFG+ +
Sbjct: 514 FYLVDSCYPTFMGFLGSYNKTRYHLPQFRIGPRIRGRVEVFNYYHSSLQSTIERAFGLCK 693

Query: 254 ARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDER 290
           AR+KI+   +  + +     I+ +C+ +HN I  +++
Sbjct: 694 ARWKILGNMSP-FALKTQNQIIVACMTIHNFIQRNDK 801


>TC210984 
          Length = 1085

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 21/73 (28%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
 Frame = +3

Query: 232 KLFAQVQERCRKDIERAFGVLQARFKIIREPARLWDIADLGIIMRSCIILHNMIVEDER- 290
           +LF       R  IER FG+ ++RF I +            +++ +C  LHN + ++ R 
Sbjct: 426 ELFNLRHASLRNVIERIFGIFKSRFTIFKSAPPFLFKTQAELVL-ACAALHNFLRKECRS 602

Query: 291 DTFAQRWTDFEQS 303
           D F    TD   S
Sbjct: 603 DEFPVEPTDESSS 641


>CA800051 
          Length = 433

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (50%)
 Frame = +2

Query: 233 LFAQVQERCRKDIERAFGVLQARFKIIREPARLWDIADLGIIMRSCI 279
           LF Q  +RC + +   + VL+        P R+W + D G++ R C+
Sbjct: 161 LFNQRMDRCSQLLYS*YEVLET------SPIRIWVLEDRGLLYRCCL 283


>TC204588 similar to UP|Q7X9G7 (Q7X9G7) Alpha-L-arabinofuranosidase, partial
            (84%)
          Length = 2003

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 143  GTTTVILEAVASHDLWIWHAFFGCPGTLNDINVLDRSPVFDD 184
            GT T +        LWI   FFGC    + I   D S VF D
Sbjct: 1752 GTVTFMSFPTF*SRLWIGTTFFGCEKEFSSITFADVSTVFVD 1627


>TC215320 homologue to UP|Q6Z1N4 (Q6Z1N4) Type 1 membrane protein-like,
           partial (6%)
          Length = 603

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (50%)
 Frame = +1

Query: 233 LFAQVQERCRKDIERAFGVLQARFKIIREPARLWDIADLGIIMRSCI 279
           LF Q  +RC + +   + VL+        P R+W + D G++ R C+
Sbjct: 286 LFNQRMDRCSQLLYS*YEVLET------SPIRIWVLEDRGLLYRCCL 408


>TC215319 similar to UP|Q6Z1N4 (Q6Z1N4) Type 1 membrane protein-like, partial
           (12%)
          Length = 665

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (50%)
 Frame = +3

Query: 233 LFAQVQERCRKDIERAFGVLQARFKIIREPARLWDIADLGIIMRSCI 279
           LF Q  +RC + +   + VL+        P R+W + D G++ R C+
Sbjct: 357 LFNQRMDRCSQLLYS*YEVLET------SPIRIWVLEDRGLLYRCCL 479


>TC232154 weakly similar to GB|AAF86996.1|9295690|AC005292 F26F24.7
           {Arabidopsis thaliana;} , partial (40%)
          Length = 576

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 124 WEWKNCPKAWEGQFTRGDKGTTTVILEAVASHDLWIWHAF 163
           W+W+ C  AW    +    G+  ++L  +     W+W AF
Sbjct: 150 WDWEWCACAWPCYASLWSHGSALLVLVVLP----WLWKAF 43


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,265,531
Number of Sequences: 63676
Number of extensions: 219199
Number of successful extensions: 1366
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of query: 356
length of database: 12,639,632
effective HSP length: 98
effective length of query: 258
effective length of database: 6,399,384
effective search space: 1651041072
effective search space used: 1651041072
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)