BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.7
(141 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224762 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 35 0.009
TC224573 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 35 0.009
TC224734 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 35 0.012
TC224753 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich gly... 35 0.012
BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - ... 35 0.012
TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protei... 34 0.020
TC224744 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glyco... 34 0.020
BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycopr... 34 0.026
BI892521 similar to PIR|T03236|T032 extensin precursor - common ... 33 0.034
AI736941 similar to GP|19699067|gb| AT5g20250/F5O24_140 {Arabido... 33 0.045
AW164667 33 0.045
TC224723 hydroxyproline-rich glycoprotein 33 0.058
TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 33 0.058
TC224768 similar to UP|Q39835 (Q39835) Extensin, partial (33%) 32 0.076
AI441847 homologue to PIR|T11622|T11 extensin class 1 precursor ... 32 0.076
TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), parti... 32 0.076
TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 32 0.076
BE474755 32 0.099
TC224791 similar to UP|Q41707 (Q41707) Extensin class 1 protein ... 32 0.099
AW102421 similar to PIR|S54156|S54 extensin-like protein - cowpe... 32 0.099
>TC224762 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (38%)
Length = 422
Score = 35.4 bits (80), Expect = 0.009
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P DPS PP PP YY K P S S YY + P SP
Sbjct: 212 YYKSPPPPDPSPPPPYYYRSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVS 391
Query: 118 YP 119
+P
Sbjct: 392 HP 397
Score = 35.0 bits (79), Expect = 0.012
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 74 YYPEDPKEDPSVPP---WMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYP 119
YY P DPS PP + SPP DPS YY + P SP P
Sbjct: 20 YYKSPPPPDPSPPPSYYYKSPPP---PDPSPPPPYYYKSPPPPSPSPPP 157
Score = 32.3 bits (72), Expect = 0.076
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P DPS PP PP YY K P S S YY + P P
Sbjct: 68 YYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPHYYYKSPPPPDPSP 247
Query: 118 YP 119
P
Sbjct: 248 PP 253
>TC224573 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (44%)
Length = 1112
Score = 35.4 bits (80), Expect = 0.009
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P DPS PP PP YY K P S S YY + P SP
Sbjct: 357 YYKSPPPPDPSPPPPYYYRSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVS 536
Query: 118 YP 119
+P
Sbjct: 537 HP 542
Score = 33.5 bits (75), Expect = 0.034
Identities = 20/51 (39%), Positives = 21/51 (40%), Gaps = 5/51 (9%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P DPS PP YY K P S S YY + P SP P
Sbjct: 69 YYKSPPPPDPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 206
Score = 32.3 bits (72), Expect = 0.076
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P DPS PP PP YY K P S S YY + P P
Sbjct: 213 YYKSPPPPDPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPHYYYKSPPPPDPSP 392
Query: 118 YP 119
P
Sbjct: 393 PP 398
Score = 31.2 bits (69), Expect = 0.17
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNK-----DPSSKSSSYYSAEDPTSPKEYP 119
YY P PS PP YY K DPS YY + P SP P
Sbjct: 21 YYKSPPPPSPS-----PPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPP 158
Score = 30.0 bits (66), Expect = 0.38
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 16/62 (25%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNK-----DPSSKSSSYYSAEDPTSPKE 117
YY P PS PP PP YY K DPS YY + P P
Sbjct: 117 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPDPSP 296
Query: 118 YP 119
P
Sbjct: 297 PP 302
Score = 25.4 bits (54), Expect = 9.3
Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 17/63 (26%)
Frame = +3
Query: 74 YYPEDPKEDPSVPP------------WMSPPQYYNKDPSSKSS-----SYYSAEDPTSPK 116
YY P PS PP PP YY P S S Y S PT
Sbjct: 453 YYKSPPPPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPSTPSPPPPYQYVSPPPPTKSP 632
Query: 117 EYP 119
P
Sbjct: 633 PPP 641
>TC224734 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (48%)
Length = 990
Score = 35.0 bits (79), Expect = 0.012
Identities = 21/53 (39%), Positives = 22/53 (40%), Gaps = 7/53 (13%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPW--MSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP PP YY K P S S YY + P SP P
Sbjct: 44 YYKSPPPPSPSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 202
Score = 33.1 bits (74), Expect = 0.045
Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 209 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVS 388
Query: 118 YP 119
+P
Sbjct: 389 HP 394
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 113 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP 292
Query: 118 YP 119
P
Sbjct: 293 PP 298
Score = 26.6 bits (57), Expect = 4.2
Identities = 16/51 (31%), Positives = 17/51 (32%), Gaps = 11/51 (21%)
Frame = +2
Query: 80 KEDPSVPPWMSPPQYYNK-----------DPSSKSSSYYSAEDPTSPKEYP 119
K P P PP YY DPS YY + P SP P
Sbjct: 2 KSPPPPSPSPPPPYYYKSPPPPSPSPPPPDPSPPPPYYYKSPPPPSPSPPP 154
Score = 25.4 bits (54), Expect = 9.3
Identities = 18/61 (29%), Positives = 19/61 (30%), Gaps = 15/61 (24%)
Frame = +2
Query: 74 YYPEDPKEDPSVPP------------WMSPPQYYNKDP---SSKSSSYYSAEDPTSPKEY 118
YY P PS PP PP YY P SS Y+ P K
Sbjct: 305 YYKSPPPPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSPPPPYHYVSPPPPTKSP 484
Query: 119 P 119
P
Sbjct: 485 P 487
>TC224753 homologue to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (48%)
Length = 1088
Score = 35.0 bits (79), Expect = 0.012
Identities = 20/51 (39%), Positives = 22/51 (42%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P DPS PP YY K P S S YY + P SP +P
Sbjct: 332 YYKSPPPPDPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVSHP 469
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNK-----DPSSKSSSYYSAEDPTSPKE 117
YY P PS PP PP YY K DPS YY + P SP
Sbjct: 236 YYKSPPPPSPSPPPPYYYKSPPPPSPAPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSP 415
Query: 118 YP 119
P
Sbjct: 416 PP 421
Score = 29.3 bits (64), Expect = 0.64
Identities = 20/61 (32%), Positives = 22/61 (35%), Gaps = 16/61 (26%)
Frame = +2
Query: 75 YPEDPKEDPSVPPWMS-----------PPQYYNKDPSSKSSS-----YYSAEDPTSPKEY 118
Y P PS PP + PP YY K P S S YY + P SP
Sbjct: 143 YKSPPPPSPSPPPPYNYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPAPP 322
Query: 119 P 119
P
Sbjct: 323 P 325
Score = 25.4 bits (54), Expect = 9.3
Identities = 18/61 (29%), Positives = 19/61 (30%), Gaps = 15/61 (24%)
Frame = +2
Query: 74 YYPEDPKEDPSVPP------------WMSPPQYYNKDP---SSKSSSYYSAEDPTSPKEY 118
YY P PS PP PP YY P SS Y+ P K
Sbjct: 380 YYKSPPPPSPSPPPPYYYKSPPPPSPVSHPPYYYKSPPPPTSSPPPPYHYVSPPPPTKSP 559
Query: 119 P 119
P
Sbjct: 560 P 562
Score = 25.4 bits (54), Expect = 9.3
Identities = 17/46 (36%), Positives = 20/46 (42%), Gaps = 2/46 (4%)
Frame = +2
Query: 76 PEDPKEDPSVPPWMS--PPQYYNKDPSSKSSSYYSAEDPTSPKEYP 119
P P E S PP PP Y +KDP + Y + P SP P
Sbjct: 56 PPPPYEYKSPPPPSPSPPPPYEHKDPHYQ----YKSPPPPSPSPPP 181
>BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (24%)
Length = 354
Score = 35.0 bits (79), Expect = 0.012
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 17/63 (26%)
Frame = +1
Query: 74 YYPEDPKEDPSVPP------------WMSPPQYYNKDPSSKSSS-----YYSAEDPTSPK 116
YY P PS PP PPQYY K P S S S YY + P SP
Sbjct: 67 YYHSPPPPSPSPPPPYYYKSPPPPSSSSPPPQYYYKSPFSPSPSPPPHYYY*SPPPPSPA 246
Query: 117 EYP 119
+P
Sbjct: 247 PHP 255
Score = 27.7 bits (60), Expect = 1.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = +1
Query: 91 PPQYYNKDPSSKSSS----YYSAEDPTSPKEYP 119
PP YYN P K + YY + P SP P
Sbjct: 10 PPYYYNSPPPPKEDAQPPYYYHSPPPPSPSPPP 108
>TC224645 homologue to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (58%)
Length = 856
Score = 34.3 bits (77), Expect = 0.020
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +2
Query: 65 SPDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
SP H Y+P + P P PP YY K P S S YY + P SP P
Sbjct: 140 SPPPPHKDPYHPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 319
Score = 33.9 bits (76), Expect = 0.026
Identities = 22/62 (35%), Positives = 23/62 (36%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P DPS PP PP YY K P S S YY + P SP
Sbjct: 518 YYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP 697
Query: 118 YP 119
P
Sbjct: 698 PP 703
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 614 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP 793
Query: 118 YP 119
P
Sbjct: 794 PP 799
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 278 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP 457
Query: 118 YP 119
P
Sbjct: 458 PP 463
Score = 30.0 bits (66), Expect = 0.38
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P P
Sbjct: 374 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPDPSP 553
Query: 118 YP 119
P
Sbjct: 554 PP 559
Score = 28.9 bits (63), Expect = 0.84
Identities = 21/57 (36%), Positives = 23/57 (39%), Gaps = 10/57 (17%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSA-----EDPTSPKEYPK 120
YY P PP SPP YY K P S S YY + +DP P Y K
Sbjct: 38 YYKSPP------PPSPSPPPYYYKSPPPPSPSPPSPYYYKSPPPPHKDPYHPPYYYK 190
Score = 26.6 bits (57), Expect = 4.2
Identities = 13/29 (44%), Positives = 14/29 (47%), Gaps = 4/29 (13%)
Frame = +2
Query: 91 PPQYYNKDPSSKSSS----YYSAEDPTSP 115
PP YY K P S S YY + P SP
Sbjct: 26 PPSYYYKSPPPPSPSPPPYYYKSPPPPSP 112
>TC224744 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (30%)
Length = 592
Score = 34.3 bits (77), Expect = 0.020
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 4/44 (9%)
Frame = +1
Query: 86 PPWMSPPQYYNK----DPSSKSSSYYSAEDPTSPKEYPKVESSS 125
PP SPP YY P K YY + P SPK P E+ +
Sbjct: 310 PPVKSPPYYYQSPPPPSPKPKPPYYYKSPPPPSPKPKPPYEAKA 441
>BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycoprotein (clone
Hyp2.13) - kidney bean (fragment), partial (38%)
Length = 422
Score = 33.9 bits (76), Expect = 0.026
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = +1
Query: 74 YYPEDPKEDPSVPP---WMSPPQYYNKDPSSKSSS----YYSAEDPTSP 115
YY P PS PP + SPP YY P S YY + P++P
Sbjct: 271 YYRSPPPPSPSPPPPYYYKSPPYYYKSPPPPSPVSHPPYYYKSPPPSTP 417
Score = 33.5 bits (75), Expect = 0.034
Identities = 20/51 (39%), Positives = 21/51 (40%), Gaps = 5/51 (9%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P DPS PP YY K P S S YY + P SP P
Sbjct: 79 YYKSPPPPDPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 216
Score = 33.1 bits (74), Expect = 0.045
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Frame = +1
Query: 74 YYPEDPKEDPSVPP-----------WMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYP 119
YY P DPS PP PP YY K P YY + P SP +P
Sbjct: 223 YYKSPPPPDPSPPPPYYYRSPPPPSPSPPPPYYYKSP----PYYYKSPPPPSPVSHP 381
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNK-----DPSSKSSSYYSAEDPTSPKE 117
YY P PS PP PP YY K DPS YY + P SP
Sbjct: 127 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPHYYYKSPPPPDPSPPPPYYYRSPPPPSPSP 306
Query: 118 YP 119
P
Sbjct: 307 PP 312
Score = 31.2 bits (69), Expect = 0.17
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNK-----DPSSKSSSYYSAEDPTSPKEYP 119
YY P PS PP YY K DPS YY + P SP P
Sbjct: 31 YYKSPPPPSPS-----PPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPP 168
>BI892521 similar to PIR|T03236|T032 extensin precursor - common tobacco,
partial (30%)
Length = 426
Score = 33.5 bits (75), Expect = 0.034
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = +3
Query: 66 PDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPK---EYPKVE 122
P +K + YY P P PP P YY+ P K YY + P SP + P +
Sbjct: 117 PPKKPY--YYHSPP---PPSPPPPKKPYYYHSPPPPKKPYYYHSPPPPSPPPPYKKPYIY 281
Query: 123 SS---SYAQLHNSSKYWHY 138
+S Y H S +Y Y
Sbjct: 282 ASPPPPYHY*HTSYRYEEY 338
>AI736941 similar to GP|19699067|gb| AT5g20250/F5O24_140 {Arabidopsis
thaliana}, partial (11%)
Length = 431
Score = 33.1 bits (74), Expect = 0.045
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Frame = -1
Query: 78 DPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS-YAQLHNS 132
+P +P +PP MSPP + P+ +S S+ + + PK +V SSS Y L +S
Sbjct: 227 NPLREPFLPPSMSPP----RSPAFRSKSFAPSPPASPPKHEQQVLSSSLYLPLRSS 72
>AW164667
Length = 234
Score = 33.1 bits (74), Expect = 0.045
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSP 115
YY P PP+ P Y++ P K YY + P SP
Sbjct: 20 YYYHSPPPPSPPPPYKKPYYYHSPPPPKKKPYYYHSPPPPSP 145
Score = 31.6 bits (70), Expect = 0.13
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPK 120
YY P PS PP P YY+ P K YY P PK
Sbjct: 23 YYHSPPP--PSPPPPYKKPYYYHSPPPPKKKPYYYHSPPPPSPPPPK 157
>TC224723 hydroxyproline-rich glycoprotein
Length = 2345
Score = 32.7 bits (73), Expect = 0.058
Identities = 20/51 (39%), Positives = 21/51 (40%), Gaps = 5/51 (9%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS P PP YY K P S S YY + P SP P
Sbjct: 817 YYYHSPPPPPSPSP---PPPYYYKSPPPPSPSPPPPYYYHSPPPPSPSPPP 960
Score = 32.0 bits (71), Expect = 0.099
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSY--YSAEDPTSPKEYP 119
YY P PS PP P YY P +S+ Y + P P YP
Sbjct: 1015 YYKSPPPPSPSPPP----PYYYQSPPPPSPTSHPPYYYKSPPPPTSYP 1146
Score = 30.8 bits (68), Expect = 0.22
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Frame = +1
Query: 66 PDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSS-----SYYSAEDPTSPKEYP 119
P+ YY P PS PP P YY+ P K Y+S P SP P
Sbjct: 700 PNSARAPYYYKSPPPPSPSPPP----PYYYHSPPPPKEHVHPPYYYHSPPPPPSPSPPP 864
>TC224546 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (67%)
Length = 1240
Score = 32.7 bits (73), Expect = 0.058
Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 16/62 (25%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 627 YYHSPPPPSPSPPPPYYYHSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSPTP 806
Query: 118 YP 119
+P
Sbjct: 807 HP 812
Score = 31.2 bits (69), Expect = 0.17
Identities = 20/55 (36%), Positives = 21/55 (37%), Gaps = 5/55 (9%)
Frame = +3
Query: 70 HFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
H YY P PS PP YY K P S S YY + P SP P
Sbjct: 519 HPPYYYHSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYHSPPPPSPSPPP 668
Score = 30.8 bits (68), Expect = 0.22
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 339 YYHSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 476
Score = 30.4 bits (67), Expect = 0.29
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 99 YYHSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKP 236
Score = 28.9 bits (63), Expect = 0.84
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 16/62 (25%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWM------------SPPQYYNKDPSSKSSS----YYSAEDPTSPKE 117
YY P PS PP PP YY+ P S YY + P SP
Sbjct: 147 YYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYHSPPPPSPSPPPPYYYKSPPPPSPVP 326
Query: 118 YP 119
P
Sbjct: 327 KP 332
Score = 28.9 bits (63), Expect = 0.84
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS----YYSAEDPTSPKEYP 119
YY + P VP PP YY+ P S YY + P SP P
Sbjct: 288 YYYKSPPPPSPVP---KPPYYYHSPPPPSPSPPPPYYYKSPPPPSPSPPP 428
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS---YYSAEDPTSPKEY 118
YY P PS PP YY K P S S Y P PKE+
Sbjct: 387 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYHSPPPPKEH 515
Score = 26.9 bits (58), Expect = 3.2
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = +3
Query: 80 KEDPSVPPWMSPPQYYNK----DPSSKSSSYYSAEDPTSPKEYP 119
K P P PP YY P K YY + P SP P
Sbjct: 9 KSPPPPSPVPKPPYYYQSPPPPSPIPKPPYYYHSPPPPSPSPPP 140
>TC224768 similar to UP|Q39835 (Q39835) Extensin, partial (33%)
Length = 483
Score = 32.3 bits (72), Expect = 0.076
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 66 PDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSP 115
P +K + YY P P PP P YY+ P K YY + P SP
Sbjct: 123 PPKKPY--YYHSPP---PPSPPPPKKPYYYHSPPPPKKPYYYHSPPPPSP 257
Score = 29.6 bits (65), Expect = 0.49
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +3
Query: 65 SPDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYY--SAEDPTSPKEYPK 120
SP + YY P P PP P YY+ P YY S P+ P Y K
Sbjct: 252 SPPPPYKKPYYYHSPP--PPSPPPPKKPYYYHSPPPPPKKPYYYHSPPPPSPPPPYKK 419
>AI441847 homologue to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (29%)
Length = 429
Score = 32.3 bits (72), Expect = 0.076
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +2
Query: 75 YPEDPKEDP---SVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEY 118
+P P P PP SP YY K P YY + P SP Y
Sbjct: 101 HPPPPSPTPYYYKSPPPPSPTPYYYKSPPPPPPYYYKSPPPPSPAPY 241
Score = 32.0 bits (71), Expect = 0.099
Identities = 22/60 (36%), Positives = 26/60 (42%), Gaps = 6/60 (10%)
Frame = +2
Query: 65 SPDRKHFALYYPEDPKEDPSVPPWM----SPPQYYNKDPSSKSSS--YYSAEDPTSPKEY 118
SP A YY + P P PP+ PP YY K P S + YY + P SP Y
Sbjct: 212 SPPPPSPAPYYYKSP---PPPPPYYYKSPPPPPYYYKSPPPPSPTPYYYKSPPPPSPTPY 382
Score = 30.4 bits (67), Expect = 0.29
Identities = 18/53 (33%), Positives = 19/53 (34%), Gaps = 6/53 (11%)
Frame = +2
Query: 74 YYPEDPKEDP------SVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPK 120
YY P P S PP PP YY P + YY P P Y K
Sbjct: 131 YYKSPPPPSPTPYYYKSPPP--PPPYYYKSPPPPSPAPYYYKSPPPPPPYYYK 283
Score = 29.6 bits (65), Expect = 0.49
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Frame = +2
Query: 74 YYPEDPKEDP----SVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEY 118
YY + P P S PP P YY P + YY P P Y
Sbjct: 272 YYYKSPPPPPYYYKSPPPPSPTPYYYKSPPPPSPTPYYYKSTPPPPYYY 418
Score = 29.3 bits (64), Expect = 0.64
Identities = 17/40 (42%), Positives = 18/40 (44%)
Frame = +1
Query: 86 PPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS 125
PP SP YY K P YY + P P Y K SSS
Sbjct: 1 PPPPSPAPYYYKSPPPPPPYYY--KSPPPPPYYYKSSSSS 114
Score = 28.9 bits (63), Expect = 0.84
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 6/51 (11%)
Frame = +2
Query: 74 YYPEDPKEDP------SVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEY 118
YY P P S PP PP YY K P YY + P SP Y
Sbjct: 203 YYKSPPPPSPAPYYYKSPPP---PPPYYYKSP-PPPPYYYKSPPPPSPTPY 343
Score = 28.1 bits (61), Expect = 1.4
Identities = 15/42 (35%), Positives = 16/42 (37%), Gaps = 3/42 (7%)
Frame = +2
Query: 74 YYPEDPKEDP---SVPPWMSPPQYYNKDPSSKSSSYYSAEDP 112
YY P P PP SP YY K P YY + P
Sbjct: 170 YYKSPPPPPPYYYKSPPPPSPAPYYYKSPPPPPPYYYKSPPP 295
Score = 26.9 bits (58), Expect = 3.2
Identities = 12/35 (34%), Positives = 13/35 (36%)
Frame = +2
Query: 86 PPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPK 120
PP P YY P + YY P P Y K
Sbjct: 107 PPPSPTPYYYKSPPPPSPTPYYYKSPPPPPPYYYK 211
>TC224765 similar to UP|Q09082 (Q09082) Extensin (Class I), partial (46%)
Length = 708
Score = 32.3 bits (72), Expect = 0.076
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = +3
Query: 86 PPWMSPPQYYNK----DPSSKSSSYYSAEDPTSPKEYP 119
PP SPP YY P K YY + P SPK P
Sbjct: 177 PPVKSPPYYYQSPPPPSPKPKPPYYYKSPPPPSPKPKP 290
Score = 30.8 bits (68), Expect = 0.22
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 393 YYHSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 530
Score = 28.9 bits (63), Expect = 0.84
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS----YYSAEDPTSPKEYP 119
YY + P VP PP YY+ P S YY + P SP P
Sbjct: 342 YYYKSPPPPSPVP---KPPYYYHSPPPPSPSPPPPYYYKSPPPPSPSPPP 482
Score = 27.7 bits (60), Expect = 1.9
Identities = 19/58 (32%), Positives = 21/58 (35%), Gaps = 4/58 (6%)
Frame = +3
Query: 66 PDRKHFALYYPEDPKEDPSVPPWMSPPQYYNK----DPSSKSSSYYSAEDPTSPKEYP 119
P K YY + P P P PP YY P K YY + P SP P
Sbjct: 222 PSPKPKPPYYYKSP---PPPSPKPKPPYYYQSPPPPSPVPKPPYYYKSPPPPSPVPKP 386
Score = 25.8 bits (55), Expect = 7.1
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDP 112
YY P PS PP YY K P S S YY + P
Sbjct: 441 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYHSPPP 557
>TC230101 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (47%)
Length = 944
Score = 32.3 bits (72), Expect = 0.076
Identities = 18/53 (33%), Positives = 21/53 (38%), Gaps = 6/53 (11%)
Frame = +2
Query: 74 YYPEDPKEDP------SVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPK 120
YY P P S PP PP YY P+ ++ YY P P Y K
Sbjct: 764 YYKSPPTPSPTPYYYKSAPP--PPPYYYKSAPTPSAAPYYYESPPPPPPYYYK 916
Score = 31.6 bits (70), Expect = 0.13
Identities = 21/62 (33%), Positives = 21/62 (33%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPP-----------WMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY P SP
Sbjct: 482 YYKSPPPPSPSPPPPYYYKAPPPPSASPPPAYYYKSPPPPSPSPTPPYYYKTAPPPSPSP 661
Query: 118 YP 119
P
Sbjct: 662 PP 667
Score = 30.0 bits (66), Expect = 0.38
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Frame = +2
Query: 64 VSPDRKHFALYYPEDPKE--DPSVPPWM----------SPPQYYNKDPSSKSSS-----Y 106
VS + + Y P P + P PP++ PP YY K P S S Y
Sbjct: 158 VSVNADGYPYYSPPPPYQYTSPPPPPYLYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYY 337
Query: 107 YSAEDPTSPKEYP 119
Y + P SP P
Sbjct: 338 YKSPPPPSPSPPP 376
Score = 29.3 bits (64), Expect = 0.64
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY A P S P
Sbjct: 434 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKAPPPPSASPPP 571
Score = 29.3 bits (64), Expect = 0.64
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +2
Query: 79 PKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPK 120
P + S PP P YY P+ + YY P P Y K
Sbjct: 719 PYYNKSPPPPSPTPYYYKSPPTPSPTPYYYKSAPPPPPYYYK 844
Score = 26.9 bits (58), Expect = 3.2
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS---YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S Y + P P++ P
Sbjct: 287 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPEKSP 418
>BE474755
Length = 293
Score = 32.0 bits (71), Expect = 0.099
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSY--YSAEDPTSPKEYP 119
YY P PS PP P YY P +S+ Y + P P YP
Sbjct: 49 YYKSPPPPSPSPPP----PYYYQSPPPPSPTSHPPYYYKSPPPPTSYP 180
>TC224791 similar to UP|Q41707 (Q41707) Extensin class 1 protein precursor,
partial (40%)
Length = 607
Score = 32.0 bits (71), Expect = 0.099
Identities = 21/78 (26%), Positives = 27/78 (33%), Gaps = 5/78 (6%)
Frame = +2
Query: 66 PDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDP-----SSKSSSYYSAEDPTSPKEYPK 120
P H L P P PP YY K P S+ YY + P SP +P
Sbjct: 350 PHHHHLPLLLRRAYYHSPPPPSASPPPPYYYKSPPPT*TSTPPXYYYQSPPPPSPTPHPP 529
Query: 121 VESSSYAQLHNSSKYWHY 138
S + + +HY
Sbjct: 530 YYYKSPPPPTSHAPPYHY 583
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS---YYSAEDPTSPKEY 118
YY P PS PP YY K P S S Y P PKE+
Sbjct: 99 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYHSPPPPKEH 227
Score = 27.3 bits (59), Expect = 2.4
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +3
Query: 74 YY--PEDPKEDPSVPPWMSPPQYY--NKDPSSKSSSYYSAEDPTSPKEYP 119
YY P PK P PP YY + PS YY + P SP P
Sbjct: 12 YYHSPPPPKHSP-------PPPYYYHSPSPSPPPPYYYKSPPPPSPSPPP 140
>AW102421 similar to PIR|S54156|S54 extensin-like protein - cowpea
(fragment), partial (53%)
Length = 399
Score = 32.0 bits (71), Expect = 0.099
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS------YYSAEDPTSPK 116
YY P PS PP SPP YY K P S YY + P SP
Sbjct: 134 YYKSPPPPSPSPPPPYYYKSPPPPSPSSPPPYYYKSPPPPEKSPAPTPYYYKSPPPPSPS 313
Query: 117 EYP 119
P
Sbjct: 314 PPP 322
Score = 31.6 bits (70), Expect = 0.13
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 86 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSSPP 223
Score = 26.2 bits (56), Expect = 5.5
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDP 112
YY P PS PP YY K P S S YY + P
Sbjct: 281 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPP 397
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.307 0.127 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,449,763
Number of Sequences: 63676
Number of extensions: 117997
Number of successful extensions: 1196
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of query: 141
length of database: 12,639,632
effective HSP length: 88
effective length of query: 53
effective length of database: 7,036,144
effective search space: 372915632
effective search space used: 372915632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0074.7