TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.3
         (267 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC227862 similar to UP|Q70FG7 (Q70FG7) 4,5-DOPA dioxygenase extr...   491  e-139
TC206620 similar to UP|Q70FG7 (Q70FG7) 4,5-DOPA dioxygenase extr...   414  e-116
TC206619 weakly similar to UP|Q70FG8 (Q70FG8) 4,5 dioxygenase ex...   186  7e-48
TC206618 similar to UP|Q70FG7 (Q70FG7) 4,5-DOPA dioxygenase extr...   184  3e-47
BI969015                                                              105  3e-23
BM522598                                                               44  6e-05
AW234036 similar to GP|21952793|dbj P0018C10.10 {Oryza sativa (j...    39  0.002
TC221115 similar to UP|Q9MSB5 (Q9MSB5) Phosphoenolpyruvate/phosp...    28  4.3
BE474820 similar to GP|6635838|gb|A amino acid/peptide transport...    28  5.6
TC208455 similar to UP|Q9LHJ0 (Q9LHJ0) Arabidopsis thaliana geno...    27  7.3
TC219068 similar to UP|O81138 (O81138) AP2 domain family transcr...    27  9.6
TC204391 homologue to UP|Q9ASR1 (Q9ASR1) At1g56070/T6H22_13 (Elo...    27  9.6
CA851802                                                               27  9.6

>TC227862 similar to UP|Q70FG7 (Q70FG7) 4,5-DOPA dioxygenase extradiol,
           partial (78%)
          Length = 1061

 Score =  491 bits (1265), Expect = e-139
 Identities = 234/264 (88%), Positives = 251/264 (94%)
 Frame = +2

Query: 1   MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV 60
           MALKDTFYISHGSPTLSIDES+ ARKFLQSWKK+VFP RP+SILVISGHW+TAVPTVNVV
Sbjct: 86  MALKDTFYISHGSPTLSIDESIQARKFLQSWKKDVFPQRPSSILVISGHWETAVPTVNVV 265

Query: 61  DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV 120
           DS NDTIYDFYGFPK MYQLKYPAPGAP LA+RVKELLK+ GFS VDED KRGLDHGAWV
Sbjct: 266 DSINDTIYDFYGFPKQMYQLKYPAPGAPQLARRVKELLKKSGFSHVDEDTKRGLDHGAWV 445

Query: 121 PLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERH 180
           PL LMYPEADIPVCQ+S+QS  DGT+HYN+GKALAPLKDEGVLI+GSGSAVHNLRALE H
Sbjct: 446 PLFLMYPEADIPVCQISIQSQQDGTYHYNLGKALAPLKDEGVLIMGSGSAVHNLRALEPH 625

Query: 181 ATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEN 240
           +TV APWA+EFDNWLK+ALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGE+
Sbjct: 626 STV-APWALEFDNWLKDALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGED 802

Query: 241 SKAKLIHSSIDLGSLSYASYQFTS 264
           +KAKLIHSSI+LGSLSYASYQFTS
Sbjct: 803 AKAKLIHSSIELGSLSYASYQFTS 874


>TC206620 similar to UP|Q70FG7 (Q70FG7) 4,5-DOPA dioxygenase extradiol,
           partial (78%)
          Length = 1189

 Score =  414 bits (1064), Expect = e-116
 Identities = 196/264 (74%), Positives = 226/264 (85%)
 Frame = +1

Query: 1   MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV 60
           + LK+TFY+SHG+PTL++D+S+ A  F  SWK++ FP RP+SIL+IS HWDT VPTVNVV
Sbjct: 130 LRLKETFYLSHGAPTLAVDDSIPAWNFFNSWKEQ-FPTRPSSILIISAHWDTHVPTVNVV 306

Query: 61  DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV 120
              NDTIYDFYGFPK MY+LKYPAPGAPHLAKRVKELL   GFS VDEDKKRGLDHGAWV
Sbjct: 307 HQ-NDTIYDFYGFPKSMYKLKYPAPGAPHLAKRVKELLLGSGFSHVDEDKKRGLDHGAWV 483

Query: 121 PLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERH 180
           PLLLMYPEADIPVCQLS+ SN  GT+HYN+GKALAPLKDEGVLIVGSGSA HNLRA+   
Sbjct: 484 PLLLMYPEADIPVCQLSISSNKGGTYHYNMGKALAPLKDEGVLIVGSGSATHNLRAIAPR 663

Query: 181 ATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEN 240
            T  APWA  F +WLK +LL+GRYE+VN YE+KAP+AK AHPWPDHF+PLHVA+GAAGEN
Sbjct: 664 GTPPAPWASAFMSWLKTSLLDGRYEEVNEYEEKAPYAKMAHPWPDHFFPLHVAMGAAGEN 843

Query: 241 SKAKLIHSSIDLGSLSYASYQFTS 264
           SKAK++H S D GS+SYAS+ FT+
Sbjct: 844 SKAKVVHDSWDGGSMSYASFGFTT 915


>TC206619 weakly similar to UP|Q70FG8 (Q70FG8) 4,5 dioxygenase extradiol,
           partial (36%)
          Length = 455

 Score =  186 bits (473), Expect = 7e-48
 Identities = 91/124 (73%), Positives = 103/124 (82%)
 Frame = +1

Query: 1   MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV 60
           + LK+TFY+SHG+P+L ID+S+ A  F  SWK++ FP +P+SILVIS HWDT VPTVNVV
Sbjct: 88  LKLKETFYLSHGAPSLVIDDSIPAWHFFNSWKEQ-FPTKPSSILVISAHWDTHVPTVNVV 264

Query: 61  DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV 120
           D  NDTIYDF GFPK MY+LKYPAPGAP LAKRVKELL   GFS VDEDKKRGLDHGAWV
Sbjct: 265 DQ-NDTIYDFSGFPKSMYKLKYPAPGAPQLAKRVKELLLGSGFSHVDEDKKRGLDHGAWV 441

Query: 121 PLLL 124
           PL L
Sbjct: 442 PLFL 453


>TC206618 similar to UP|Q70FG7 (Q70FG7) 4,5-DOPA dioxygenase extradiol,
           partial (40%)
          Length = 456

 Score =  184 bits (468), Expect = 3e-47
 Identities = 82/120 (68%), Positives = 103/120 (85%)
 Frame = +3

Query: 145 THHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERHATVAAPWAVEFDNWLKEALLEGRY 204
           T+HYN+GKALAPLKDEGVLI+GSGSA HNLRA+    +  APWA  F +WL+ +LL+GRY
Sbjct: 3   TYHYNMGKALAPLKDEGVLIIGSGSATHNLRAMAPRGSPPAPWASAFMSWLETSLLDGRY 182

Query: 205 EDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGENSKAKLIHSSIDLGSLSYASYQFTS 264
           E+VN +E+KAP+AK AHPWPDHF+PLHVA+GAAGEN+KAK++H S D GS+SYAS+ FT+
Sbjct: 183 EEVNEFEEKAPYAKMAHPWPDHFFPLHVAMGAAGENAKAKVVHDSWDAGSISYASFGFTT 362


>BI969015 
          Length = 733

 Score =  105 bits (261), Expect = 3e-23
 Identities = 44/62 (70%), Positives = 56/62 (89%)
 Frame = -3

Query: 203 RYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGENSKAKLIHSSIDLGSLSYASYQF 262
           RYE+VN +E+KAP+AK AHPWPDHF+PLHVA+GAAGEN+KAK++H S D GS+SYAS+ F
Sbjct: 299 RYEEVNEFEEKAPYAKMAHPWPDHFFPLHVAMGAAGENAKAKVVHDSWDAGSISYASFGF 120

Query: 263 TS 264
           T+
Sbjct: 119 TT 114


>BM522598 
          Length = 373

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 186 PWAVEFDNWLKE--ALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGENSKA 243
           PWA EF  W+ +  AL     E       K P  ++AHP  +H+ P+  A+GAA    K 
Sbjct: 85  PWAKEFAAWVHKSAALPAPEREAALLQYAKQPTFRRAHPREEHWMPIFFALGAADSQEKV 264

Query: 244 KLIHSSIDLGSLSYAS 259
           +++   I  GSL+ ++
Sbjct: 265 QILADRILCGSLAVST 312


>AW234036 similar to GP|21952793|dbj P0018C10.10 {Oryza sativa (japonica
           cultivar-group)}, partial (6%)
          Length = 407

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 78  YQLKYPAPGAPHLAKRVKE 96
           +QLKYPAPGAP LAKRVKE
Sbjct: 350 WQLKYPAPGAPQLAKRVKE 406


>TC221115 similar to UP|Q9MSB5 (Q9MSB5) Phosphoenolpyruvate/phosphate
           translocator, partial (18%)
          Length = 515

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 224 PDHFYPLHVAIGAAGENSKAKLIHSSIDLGSL 255
           P HF+P H    +  E+S    + ++++LG+L
Sbjct: 218 PSHFHPFHARATSVPESSAGNTLLNTLELGAL 313


>BE474820 similar to GP|6635838|gb|A amino acid/peptide transporter {Prunus
           dulcis}, partial (17%)
          Length = 319

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 209 HYEQKAP-HAKKAHPWPDHFYPLHVA 233
           H ++K P +A K   WP HF P+HV+
Sbjct: 164 HRQRKGPFNAAKNGNWPFHFSPVHVS 241


>TC208455 similar to UP|Q9LHJ0 (Q9LHJ0) Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MMP21, partial (18%)
          Length = 1350

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 116 HGAWVPLLLMYPEADIPVCQLS 137
           H  W+PL+ M PE  +  CQLS
Sbjct: 355 HQIWLPLVQMLPELLVRKCQLS 420


>TC219068 similar to UP|O81138 (O81138) AP2 domain family transcription
           factor homolog (AP2 domain transcription factor)
           (ABI4:abscisic acid-insensitive 4 ) (ABI4), partial
           (25%)
          Length = 1064

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -2

Query: 186 PWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAG 238
           PW  + +   + +L   RY DV   + K PH   AH     +Y  +    AAG
Sbjct: 679 PWKTKPNPRRRNSLPPPRYSDVAAVDSKKPHVALAHAHGYCYY*YYPENHAAG 521


>TC204391 homologue to UP|Q9ASR1 (Q9ASR1) At1g56070/T6H22_13 (Elongation
           factor EF-2), complete
          Length = 2941

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 3   LKDTFYISHGSPTLSIDE-SLVARKFLQSWKKEVFPPRP 40
           L D        PTL+    S++A  FL  W KEVF P P
Sbjct: 963 LLDGLVTELNKPTLAGSRTSILAGPFLCGWIKEVFTPEP 847


>CA851802 
          Length = 612

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 211 EQKAPH-AKKAHPWPDHFYPLHVAIGA 236
           E++APH A     +PDHF+ LH  I +
Sbjct: 64  EKRAPHPAATGTSFPDHFFVLHCRIAS 144


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,031,523
Number of Sequences: 63676
Number of extensions: 194057
Number of successful extensions: 925
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of query: 267
length of database: 12,639,632
effective HSP length: 96
effective length of query: 171
effective length of database: 6,526,736
effective search space: 1116071856
effective search space used: 1116071856
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)