BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.19
(2281 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 1137 0.0
CO982196 219 1e-56
TC211627 124 3e-54
BQ299538 129 2e-44
NP395548 reverse transcriptase [Glycine max] 175 2e-43
BI425021 169 1e-41
NP395547 reverse transcriptase [Glycine max] 166 1e-40
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 144 3e-34
CF922488 144 4e-34
TC231779 weakly similar to UP|Q9SGV7 (Q9SGV7) F1N19.15, partial ... 143 1e-33
AW570005 140 8e-33
BI317507 136 1e-31
TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 114 2e-31
BQ627806 80 3e-30
BM731326 weakly similar to GP|21740635|em OSJNBb0043H09.2 {Oryza... 124 4e-28
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti... 104 2e-25
TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, parti... 114 4e-25
CD487724 113 8e-25
AW830191 113 1e-24
BI317638 weakly similar to GP|9294238|dbj| contains similarity t... 104 1e-24
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 1137 bits (2940), Expect = 0.0
Identities = 615/1510 (40%), Positives = 899/1510 (58%), Gaps = 10/1510 (0%)
Frame = +1
Query: 465 DRMEALEN-QMGSVTTALQELALQLQQQSLTLTELSKQMGR-KETGHEGDTPIADSHPGE 522
+R+EA + QM + Q Q + ++++ +++ + H +
Sbjct: 97 ERLEATNHAQMEKIEVMQSTNDSQFSQLNAVMSQVLQRLQNIPMSSHGASNSQKEQQRSS 276
Query: 523 SRLAGKKVKLPVFEGEDPVAWITRAEIYFDVQNTPDEMRVKLTRLSMEGSTIHWFNLLME 582
++ K+ P F+G++ + WI +AE +FD TPD R+ + + ++ + W+ +L +
Sbjct: 277 FQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQK 456
Query: 583 TEDNLSWEKLKRALIARYGGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQ 642
TE SW+ RAL +G + P L L Q +V+E+ F L ++V L +
Sbjct: 457 TEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEA 636
Query: 643 YLGYFMSGLKPAIRRRVRTLNPGTRMEMMRIAKDVEEELKEEDEDDGKKMVKRSGFDRSG 702
L F+SGL+ I R V+ + P T + + +AK EE+ K F
Sbjct: 637 ILDCFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPP--------KTKTFSNLA 792
Query: 703 QSNWAGSSANRVGLFSRDVTRFSKPGGSIPSRSMSSVGSTTNSAASLGSSTRKGENDLRT 762
++ + +SA + P + + N L + + K N LR
Sbjct: 793 RNFTSNTSATQ----------------KYPPTNQKNDNPKPNLPPLLPTPSTKPFN-LRN 921
Query: 763 GSSEKWKGVRSFQVDEIAERRAKGLCFKCGGKYHPTLHKCPERSLRVLILGDGETVDEEG 822
+ ++ EI RR K LC+ C K+ P HKCP R + +L L + + D+
Sbjct: 922 ------QNIKKISPAEIQLRREKNLCYFCDEKFSPA-HKCPNRQVMLLQLEETDE-DQTD 1077
Query: 823 EIVMLEGEPEVSEEDEAVVEYKLMGVLGRMEEHHTMKIEGQVDNVNLLVLIDSGASHNFI 882
E VM+ E + ++ + + G G T++ GQV + + +L+D G+S NFI
Sbjct: 1078 EQVMVTEEANMDDDTHHLSLNAMRGSNGV----GTIRFTGQVGGIAVKILVDGGSSDNFI 1245
Query: 883 SPAVTNALGLVITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIEVVIDALVLELGGLDM 942
P V L L + P + + +G+G + +G+ + + + EV + +L++ G D+
Sbjct: 1246 QPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADV 1425
Query: 943 VLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKGSNHSFLHSFLMDKQYRGGME 1002
+LG +WL+TLG V D+ LT++F ++ + LQG G + + LH F + + E
Sbjct: 1426 ILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEE 1605
Query: 1003 WWWSHLNSAEVT-NTEVETPR----ELMETLEEFQEVFRSKIQLPPERSKVHQIKLFPEQ 1057
+ L EV +T + P EL L + +VF LPP+R + H I L
Sbjct: 1606 CFAIQLIQKEVPEDTLKDLPTNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGS 1785
Query: 1058 ETINVRPYRYPHHQKEEIERQVAELMEAGIIRPSMSAYSSPVILVKKKDKSWRMCVDYRA 1117
+ VRPYRYPH QK++IE+ + E++ GII+PS S +S P++LVKKKD SWR C DYRA
Sbjct: 1786 GPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRA 1965
Query: 1118 LNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNGHYE 1177
LN T+ D +P+P VDELLDEL+GA FSK+DL+SGYHQI V +D EKTAFRTH+GHYE
Sbjct: 1966 LNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYE 2145
Query: 1178 YLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVLSVLL 1237
+LVMPFGL NAPATFQ +MN IF+ LRKFVLVFFDDILIYS +HL HL+ VL L
Sbjct: 2146 WLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLK 2325
Query: 1238 ANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGLTG 1297
+ A +KC FG +DYLGH +SG G++++ KV+ ++DWP P NVK +RGFLGLTG
Sbjct: 2326 QHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTG 2505
Query: 1298 YYRKFIKDYGKMANPLTELTKKDSFSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVE 1357
YYR+FIK Y +A PLT+L +KDSF W EA+ AF++LK+ MT PVL LP+F+ PF +E
Sbjct: 2506 YYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILE 2685
Query: 1358 CDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFI 1417
DA+G G+GAVL Q P+A+FSK L+ +S Y +EL+A+ ++ +RHYLLG +FI
Sbjct: 2686 TDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFI 2865
Query: 1418 VYTDHKSLKHFLQQKVSSPDQQCWLAKLMGYQFQVKYKPGLENKAADALSRRYDEV--EL 1475
+ TD +SLK + Q + +P+QQ WL K +GY F+++YKPG +N+AADALSR + E
Sbjct: 2866 IRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEP 3045
Query: 1476 HSLISFPLWNDRKRLLEEITQDPYIQDLQSAVQKDPASKPGFAVQHGVLLYHGRLVLSPT 1535
HS+ L R RL+ DP+++ L K A + V+ G+L + R+V+
Sbjct: 3046 HSIFLEEL---RARLI----SDPHLKQLME-TYKQGADASHYTVREGLLYWKDRVVIPAE 3201
Query: 1536 SPSIPWLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACDVCQRHKYSAL 1595
+ +L+E+H SP GGH+G RT RL YW MQ+ V+ Y++ C +CQ+ K +
Sbjct: 3202 EEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNT 3381
Query: 1596 SPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKS 1655
P GLLQPLPIP VWED+++DFITGLP S G ++VV+DRL+KY+HFI LK Y +K
Sbjct: 3382 LPAGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKV 3561
Query: 1656 IAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVI 1715
+AE F+ +V+LHGIP S++SDRD +F S FW LFKLQGT L MSSAYHP++DGQ+EV+
Sbjct: 3562 VAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVL 3741
Query: 1716 NRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQAPPIVKFLSN 1775
N+CLE YLRCF +HPK W + WAEFWYNT +H S+G TPF +YGR+ P + + +
Sbjct: 3742 NKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACS 3921
Query: 1776 ETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLRPHRQ 1835
A V +L++RD L +L+ +L +AQ+ M A+KKR D+SF +G+ V +KL+P+RQ
Sbjct: 3922 IDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQ 4101
Query: 1836 HSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHISLLKKAVGNYQVQG 1895
HS V R NQKL+ R++GPF++ AK+G VAY+L+LP+ ++IHPVFH+S LK G Q
Sbjct: 4102 HSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQ-DP 4278
Query: 1896 QLPADLGVDDTTDI-YPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDNVVLAGQF 1954
LP L V + + P I+ +R + G +++ Q LV+W++ +E TWED + +
Sbjct: 4279 YLPLPLTVTEMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASY 4458
Query: 1955 PEFCLEDKAV 1964
P F LEDK V
Sbjct: 4459 PTFNLEDKVV 4488
>CO982196
Length = 812
Score = 219 bits (557), Expect = 1e-56
Identities = 105/206 (50%), Positives = 142/206 (67%), Gaps = 3/206 (1%)
Frame = +1
Query: 1484 WNDRKRLL---EEITQDPYIQDLQSAVQKDPASKPGFAVQHGVLLYHGRLVLSPTSPSIP 1540
W R+ L EEI + ++ + KPG+A++ G L + RLVLS S IP
Sbjct: 193 WCKRRELADWEEEIQAYLELYEIYQGILTKTTKKPGYAIRGGKLYFKDRLVLSKNSTKIP 372
Query: 1541 WLLEEFHGSPSGGHSGFLRTYRRLATTLYWVGMQKRVRDYVRACDVCQRHKYSALSPGGL 1600
LL+E SP GGHSGF RT++R+A ++W GM+K RDYV AC++C+R+K S LSP GL
Sbjct: 373 LLLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYVAACEICRRNKTSTLSPAGL 552
Query: 1601 LQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVF 1660
L LPIP VW D+S+DFI GLPK++G + +LVVVDRL+KY+HF L HPYTAK +AE+F
Sbjct: 553 L*LLPIPTKVWTDISMDFIGGLPKAQGKDNILVVVDRLTKYAHFFALSHPYTAKEVAELF 732
Query: 1661 VREVVRLHGIPNSVISDRDPIFVSHF 1686
++E+VRLHG P S++SD +F+S F
Sbjct: 733 IKELVRLHGFPASIVSDXXRLFMSLF 810
Score = 32.3 bits (72), Expect = 2.4
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 1408 RHYLLGKEFIVYTDHKSLKHFLQQKVSSPDQQCW 1441
RHY +GK+FI+ T+ +S K +Q++ S +Q W
Sbjct: 53 RHYPVGKKFIIRTN*RSSKFLNEQRLMSEEQFKW 154
>TC211627
Length = 1034
Score = 124 bits (312), Expect(2) = 3e-54
Identities = 77/212 (36%), Positives = 111/212 (52%)
Frame = +3
Query: 1760 VVYGRQAPPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLS 1819
V+YG+ P + + + + V AV L L LQK Q+ M A+ RRDL+
Sbjct: 240 VMYGKPPPALPLYSAGTSTVEAVDAILHSLATIHHTLTCRLQKYQDSMKRIADSHRRDLT 419
Query: 1820 FAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVF 1879
F +G+WV+++L P+RQ S+ KL+ RFYGP+QI+A+VG VAYRL+LP SKIHP+F
Sbjct: 420 FNIGDWVYVRL*PYRQTSIQSTYT-KLSKRFYGPYQIQARVGQVAYRLQLPPTSKIHPIF 596
Query: 1880 HISLLKKAVGNYQVQGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSM 1939
H+SLLK G + + + P + + + Q LV+W + +
Sbjct: 597 HVSLLKVHHGPIPPELLALPPFSTTNHPLVQPLQFLDWKMDESTTPPIPQVLVQWTNLAP 776
Query: 1940 EEVTWEDNVVLAGQFPEFCLEDKAVPMEGGID 1971
E+ TWE L + LEDK GGID
Sbjct: 777 EDTTWESWTQLKDIYD---LEDKVCFQTGGID 863
Score = 108 bits (269), Expect(2) = 3e-54
Identities = 49/79 (62%), Positives = 59/79 (74%)
Frame = +2
Query: 1681 IFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISW 1740
IF+S W ELF + GTKL+ S+AYHP+TDGQTEVINR LE YLR F DHP+ W ++S
Sbjct: 2 IFISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSL 181
Query: 1741 AEFWYNTTFHSSIGQTPFE 1759
AE YNT+ HS IG +PFE
Sbjct: 182 AE*CYNTSVHSGIGFSPFE 238
>BQ299538
Length = 426
Score = 129 bits (324), Expect(2) = 2e-44
Identities = 59/101 (58%), Positives = 74/101 (72%)
Frame = +3
Query: 1690 LFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTF 1749
+ KL GT LKMS++YHP DGQT +N CLE++LRCF +D PK W+SWAE+WYNT F
Sbjct: 129 IVKLPGTYLKMSTSYHP*IDGQT--VNHCLETFLRCFVADQPKM*VQWLSWAEYWYNTNF 302
Query: 1750 HSSIGQTPFEVVYGRQAPPIVKFLSNETKVAAVALELSERD 1790
H+S G TPFEVVYGR+ P + +FL E +V AV EL +RD
Sbjct: 303 HASTGTTPFEVVYGRKPPVLNRFLPGEVRVEAVRRELQDRD 425
Score = 71.2 bits (173), Expect(2) = 2e-44
Identities = 30/44 (68%), Positives = 37/44 (83%)
Frame = +1
Query: 1647 LKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSEL 1690
LKHPY+A+ +AE+F +EVV LHG+P SV+SD DPIFVS FW EL
Sbjct: 1 LKHPYSARVLAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 175 bits (443), Expect = 2e-43
Identities = 100/254 (39%), Positives = 140/254 (54%), Gaps = 19/254 (7%)
Frame = +1
Query: 1075 IERQVAELMEAGIIRP-SMSAYSSPVILVKKKD------------------KSWRMCVDY 1115
+ ++V +L+E G+I P S SA+ SPV++V KK+ SW++C+DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 1116 RALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNGH 1175
R LN+AT D +P+P +D++L+ L G + + +D GY+QI V D EK AF G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 1176 YEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVLSV 1235
+ Y +PFGL NAP TFQ M IF + K + VF DD ++ L L L++VL
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 1236 LLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGL 1295
+ V N KC F LGH IS G+ VD K+ I P P NVKG+R FLG
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1296 TGYYRKFIKDYGKM 1309
+YR+FIKD+ K+
Sbjct: 721 ARFYRRFIKDFTKV 762
>BI425021
Length = 426
Score = 169 bits (429), Expect = 1e-41
Identities = 76/142 (53%), Positives = 99/142 (69%)
Frame = -1
Query: 1601 LQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVF 1660
L PLP+P WEDLS+DFI GLP G + VVV+R SK H L +TA +A +F
Sbjct: 426 LCPLPVPQRPWEDLSMDFIVGLPPYHGHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASLF 247
Query: 1661 VREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLE 1720
+ V++LHG P S++SDRDP+F+SHFW +LF+L GT L+MSSAYHP+TDGQTEV+NR +E
Sbjct: 246 LNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVIE 67
Query: 1721 SYLRCFASDHPKSWSHWISWAE 1742
YLR F P++ +I W E
Sbjct: 66 QYLRAFVHGRPRNLGRFIPWVE 1
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 166 bits (420), Expect = 1e-40
Identities = 103/254 (40%), Positives = 137/254 (53%), Gaps = 19/254 (7%)
Frame = +1
Query: 1075 IERQVAELMEAGIIRP-SMSAYSSPVILVKKK--------DKS----------WRMCVDY 1115
+ ++V +L+EAG+I P S S++ SPV +V KK D++ WRMC+DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 1116 RALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNGH 1175
R LN+AT D YP+P +D++L L S + +D SGY+QI V D EKTAF
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 1176 YEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKDLPEHLTHLKLVLSV 1235
+ Y MPFGL NA TFQ M IF + K + VF DD + L +L+ VL
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 1236 LLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRGFLGL 1295
+ V N KC F LGH IS G+ V EK+ I P P NVKG+ FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1296 TGYYRKFIKDYGKM 1309
G+YR+FIKD+ K+
Sbjct: 721 VGFYRRFIKDFTKV 762
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 144 bits (364), Expect = 3e-34
Identities = 67/148 (45%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Frame = +1
Query: 1281 PVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKD-SFSWGPEADRAFLQLKRVM 1339
P K+V +R F GL +YR+F+ ++ +A+PL EL KK+ +F+WG + ++AF LK +
Sbjct: 97 PTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKL 276
Query: 1340 TSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMA 1399
T PVL LP+F+ FE+ECDA+G G+ AVL+Q P+A+FS+ L + L Y+KEL A
Sbjct: 277 TKAPVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYA 456
Query: 1400 LVLSIQHWRHYLLGKEFIVYTDHKSLKH 1427
L+ + Q W H+L+ KEF++++DH+SLK+
Sbjct: 457 LIRAPQTWEHFLVCKEFVIHSDHQSLKY 540
Score = 35.0 bits (79), Expect = 0.38
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +2
Query: 1254 SIDYLGHIISGAGMAVDPEKVKCIMDWPVPKNVKGVRG 1291
+I + G ++ G+ +DPEK+K I +WP P V + G
Sbjct: 14 NIFFSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEILG 127
>CF922488
Length = 741
Score = 144 bits (363), Expect = 4e-34
Identities = 92/246 (37%), Positives = 131/246 (52%), Gaps = 1/246 (0%)
Frame = +3
Query: 1102 VKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHE 1161
V K+D MCVDYR LN A+ DK+P+P ++ L+D S FS +D SGY+QI++
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 1162 DDIEKTAFRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYSKD 1221
+D+EKT F T G + Y M FGL N AT+Q M +F + K + V+ DD+++ S+
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 1222 LPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDPEKVKCIMDWP 1281
EHL +L+ + L N KC F S L I S G+ VD KVK I++
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 1282 VPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSF-SWGPEADRAFLQLKRVMT 1340
P K V+GFLG Y +FI PL L K+ F W + AF ++K+ +
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 1341 SPPVLI 1346
+P VL+
Sbjct: 723 NPHVLV 740
>TC231779 weakly similar to UP|Q9SGV7 (Q9SGV7) F1N19.15, partial (7%)
Length = 620
Score = 143 bits (360), Expect = 1e-33
Identities = 93/181 (51%), Positives = 109/181 (59%)
Frame = +3
Query: 2097 QNGLQKGCS*YSYLQFSY*WFMQNRESLSCLGAS**DACEGSTSQYNHL*FFIGCFMQEP 2156
+N K S*YS +QFSY*W +Q RE+ C + *DA + STS +HL F I CFMQ+P
Sbjct: 3 RNAA*KYGS*YSDVQFSY*WVVQIRENYFCFESYE*DAPQRSTS*CSHLHFLIRCFMQKP 182
Query: 2157 SC*QSNCIDQEN*RPGCSARFMHIQYTYGWTMQSWKT*GCARDFS*SFDKRLSYNCPYIY 2216
*Q NC EN SA ++HI TY W M WKT* C R FS S RL Y C IY
Sbjct: 183 KP*QGNCTIHENEETENSANYVHIHGTY*WIM*RWKT*ECTRAFSTSLG*RLLYRCLDIY 362
Query: 2217 CYDQWTL*RRLV**SVGLAVKNGN*GLYS*CYNF*IYYPFTL*KW*E*QG*ETSS*ND** 2276
C+DQW L*R V *S G VKNG L+ *C NF* +Y + *+ *+* G E S *ND *
Sbjct: 363 CHDQWAL*RGHVR*SFGHEVKNGRQWLHP*CCNF*NHYSLSF*EG*K**GRENSP*NDC* 542
Query: 2277 R 2277
R
Sbjct: 543 R 545
>AW570005
Length = 413
Score = 140 bits (352), Expect = 8e-33
Identities = 70/137 (51%), Positives = 88/137 (64%)
Frame = -2
Query: 1281 PVPKNVKGVRGFLGLTGYYRKFIKDYGKMANPLTELTKKDSFSWGPEADRAFLQLKRVMT 1340
P P+ + +RGFL LTG+YR+FIK Y MA PL+ L KDSF W PEAD AF LK V+T
Sbjct: 412 PPPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDSFVWSPEADVAFQALKNVVT 233
Query: 1341 SPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQPLAFFSKALSAGNLAKSVYEKELMAL 1400
+ VL LP+FT PF VE DA+G +GAVL Q+ P+AFFSK + S Y EL A+
Sbjct: 232 NTLVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYVHELAAI 53
Query: 1401 VLSIQHWRHYLLGKEFI 1417
++ WR YLLG +
Sbjct: 52 TNVVKKWRQYLLGHHLV 2
>BI317507
Length = 359
Score = 136 bits (342), Expect = 1e-31
Identities = 68/115 (59%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Frame = -1
Query: 1212 FDDILIYSKDLPEHLTHLKLVLSVLLANCFVANQTKCKFGCASIDYLGHIISGAGMAVDP 1271
F +ILIYS D H+ HL VL VL VAN+ KC F +I+YLGH+IS +A+D
Sbjct: 359 FYNILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDS 180
Query: 1272 EKVKCIMDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKMA-NPLTELTKKDSFSWG 1325
KVK +++WPVPKNVK V FL LTGYYRKFIKDYGK+A PLT+LTK D F WG
Sbjct: 179 NKVKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLTKNDGFKWG 15
>TC211973 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (4%)
Length = 730
Score = 114 bits (285), Expect(2) = 2e-31
Identities = 56/102 (54%), Positives = 75/102 (72%)
Frame = +1
Query: 1789 RDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAA 1848
RD L LR +L K+ + M NK+RRD+ + VG+ VFLK++P+R+ S+ KRIN+KL+
Sbjct: 43 RDGLLATLRENLLKS*DIM*ANTNKRRRDIEYVVGD*VFLKMQPYRRRSLAKRINEKLSP 222
Query: 1849 RFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHISLLKKAVGN 1890
RFY PFQ+ KVG +AY+L LP+ KIHPVFH+SLLKKA N
Sbjct: 223 RFYAPFQVFNKVGTIAYKLDLPSHIKIHPVFHVSLLKKASPN 348
Score = 42.4 bits (98), Expect(2) = 2e-31
Identities = 30/111 (27%), Positives = 52/111 (46%)
Frame = +3
Query: 1897 LPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSMEEVTWEDNVVLAGQFPE 1956
LP L D Y + ++ +R ++ G+ +V L++WK+ E +WE L F
Sbjct: 351 LPPMLSEDWKLQTYSDSVLDSRELQPGNVKV---LIQWKNLPPSENSWESVAKLQEIFSI 521
Query: 1957 FCLEDKAVPMEGGIDRNLNEEVGLVVNASVGQEENRPKVWQVYRRKRGKAA 2007
+ LEDK + GGID++ +++P + +VY RK + A
Sbjct: 522 YHLEDKVSLLGGGIDKH----------------KHKPPIPKVYTRKHPRGA 626
>BQ627806
Length = 435
Score = 80.5 bits (197), Expect(2) = 3e-30
Identities = 34/83 (40%), Positives = 54/83 (64%)
Frame = +1
Query: 1375 PLAFFSKALSAGNLAKSVYEKELMALVLSIQHWRHYLLGKEFIVYTDHKSLKHFLQQKVS 1434
PL F + L S Y +EL A+ ++++ WR YLLG F++ TDH+SLK + Q V
Sbjct: 181 PLPFSFMPFCSKLLRASTYVRELAAITVAVKKWRQYLLGHHFVILTDHRSLKELMSQAVQ 360
Query: 1435 SPDQQCWLAKLMGYQFQVKYKPG 1457
+P+QQ +LA+LMG+ + ++Y+ G
Sbjct: 361 TPEQQIYLARLMGFDYTIQYRAG 429
Score = 72.4 bits (176), Expect(2) = 3e-30
Identities = 37/68 (54%), Positives = 43/68 (62%)
Frame = +3
Query: 1316 LTKKDSFSWGPEADRAFLQLKRVMTSPPVLILPNFTLPFEVECDAAGRGIGAVLMQQRQP 1375
L KD F W EADRAF QLK + PVL LP+F F VE DA+G G+GA+L Q P
Sbjct: 3 LLVKDQFHWNEEADRAFSQLKLALCQAPVLGLPDFNSSFVVETDASGIGMGAILSQNHHP 182
Query: 1376 LAFFSKAL 1383
LAFF A+
Sbjct: 183 LAFFIYAI 206
>BM731326 weakly similar to GP|21740635|em OSJNBb0043H09.2 {Oryza sativa
(japonica cultivar-group)}, partial (3%)
Length = 424
Score = 124 bits (312), Expect = 4e-28
Identities = 63/135 (46%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = +1
Query: 1800 LQKAQEQMAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAK 1859
L++AQ M +AN RR VG+WV+LK+RPHRQ S+ R++ KL ARFYGP+ + +
Sbjct: 25 LERAQSLMVKHANNHRRPHDINVGDWVYLKIRPHRQGSMPPRLHPKLTARFYGPYLVMRQ 204
Query: 1860 VGAVAYRLKLPAESKIHPVFHISLLKKAVGNYQVQGQLPADLGVDDTTDIY-PEVIVGTR 1918
VGAVA++L+LP+E++IHPVFH+S LK+A+GN+Q Q +LP DL + ++Y P I+ R
Sbjct: 205 VGAVAFQLQLPSEARIHPVFHVSQLKRALGNHQAQEELPPDL--EHQAELYFPVQILKIR 378
Query: 1919 TVRLGDSEVHQSLVK 1933
V+ Q L++
Sbjct: 379 EVQKQHEVERQVLIR 423
>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
Length = 810
Score = 104 bits (260), Expect(2) = 2e-25
Identities = 50/104 (48%), Positives = 72/104 (69%)
Frame = +3
Query: 1807 MAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYR 1866
M YA++ RR ++ +VG+WV+LKL+P+R S+ K+ N+KL+ RFYGP+QI+ ++G VA+
Sbjct: 3 MKAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFE 182
Query: 1867 LKLPAESKIHPVFHISLLKKAVGNYQVQGQLPADLGVDDTTDIY 1910
L LP KIHPVFH SLLKKAV LP L D +++ +
Sbjct: 183 LDLPPARKIHPVFHASLLKKAVAATANPQPLPLMLSEDLSSEFF 314
Score = 31.6 bits (70), Expect(2) = 2e-25
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 1941 EVTWEDNVVLAGQFPEFCLEDKAVPMEGGI 1970
E TWE V+ QFP F LEDK V + GG+
Sbjct: 395 EATWESVEVIKEQFPSFHLEDK-VTLLGGV 481
>TC213413 weakly similar to UP|Q84ZV5 (Q84ZV5) Polyprotein, partial (5%)
Length = 761
Score = 114 bits (286), Expect = 4e-25
Identities = 62/158 (39%), Positives = 95/158 (59%), Gaps = 2/158 (1%)
Frame = +1
Query: 1822 VGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHI 1881
+G+WV +KLRPHRQ S + KL R+YGPF+++ ++G V YRLKL A S+IHPVFH+
Sbjct: 4 IGDWVLVKLRPHRQGSASETTYSKLTKRYYGPFEVQERLGKVVYRLKLTAHSRIHPVFHV 183
Query: 1882 SLLKKAVGNYQV--QGQLPADLGVDDTTDIYPEVIVGTRTVRLGDSEVHQSLVKWKHKSM 1939
SLLK VG+ + G LP + ++ T+ P ++ ++ V + LV+W S
Sbjct: 184 SLLKAFVGDPETTHAGPLPV-MRTEEATNT-PLTVIDSKLVPADNGPRRMVLVQWPSASR 357
Query: 1940 EEVTWEDNVVLAGQFPEFCLEDKAVPMEGGIDRNLNEE 1977
++ +WED VL ++ LEDK + E G D ++ +E
Sbjct: 358 QDASWEDWQVLRERYN---LEDKVLSEERGDDTHVEDE 462
>CD487724
Length = 676
Score = 113 bits (283), Expect = 8e-25
Identities = 64/219 (29%), Positives = 114/219 (51%), Gaps = 3/219 (1%)
Frame = +3
Query: 869 LLVLIDSGASHNFISPAVTNALGLVITPIASRHIRLGDGHRVVTQGVCKGIKARLGKIEV 928
L+ L+D G++HNF+ + + LGL + +G+GH + +C+ I + IE
Sbjct: 24 LVYLVDGGSTHNFVQQPLVSQLGLPCRSTPPLRVMVGNGHHLKCTTICEAIPISIQNIEF 203
Query: 929 VIDALVLELGGLDMVLGVSWLSTLGKVVMDWKLLTMQFVHGNQVVKLQGLGGKGSNHSFL 988
++ VL + G ++VLGV WL TLG +++D+ L+MQF + +++V+L+ G + L
Sbjct: 204 LVHLYVLPIVGANIVLGVQWLKTLGPILVDYNSLSMQFFYQHRLVQLK--GESEAQLGLL 377
Query: 989 HSFLMDKQYRGGMEWWWSH---LNSAEVTNTEVETPRELMETLEEFQEVFRSKIQLPPER 1045
+ + + ++ + H L + P+ + L++F +F+ LPP R
Sbjct: 378 NHHQLRRLHQTHEPVTYFHIAILTENTSPTSSPPLPQPIQHLLDQFSALFQ*PQGLPPAR 557
Query: 1046 SKVHQIKLFPEQETINVRPYRYPHHQKEEIERQVAELME 1084
H I L P E +N+R Y YPH+ EIE QV +++
Sbjct: 558 ETDHHIHLLP*SEPVNMRLY*YPHY*NNEIEHQVNLMLQ 674
>AW830191
Length = 372
Score = 113 bits (282), Expect = 1e-24
Identities = 51/123 (41%), Positives = 80/123 (64%)
Frame = +3
Query: 1723 LRCFASDHPKSWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQAPPIVKFLSNETKVAAV 1782
LRC P+ W +SWAEFW+NT +++S+ TPF+V+YG P ++K + V
Sbjct: 6 LRCLTGTKPQQWPKRLSWAEFWFNTNYNNSLKLTPFKVLYGCDPPHLLKGAIISSTAEEV 185
Query: 1783 ALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRI 1842
+ ++RD+ L L+G+L KAQ QM YA++ RR + VG+WV+LKL+P+RQ S+ ++
Sbjct: 186 NVMTNDRDQMLHDLKGNLAKAQNQMK-YADRSRRSIPLNVGDWVYLKLQPYRQRSLARKT 362
Query: 1843 NQK 1845
N+K
Sbjct: 363 NEK 371
>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
partial (5%)
Length = 420
Score = 104 bits (259), Expect(2) = 1e-24
Identities = 54/108 (50%), Positives = 68/108 (62%)
Frame = -2
Query: 1584 CDVCQRHKYSALSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGFEAVLVVVDRLSKYSH 1643
C CQ KY LL PL +P+ WEDLSLDFITGL A+LVVVD SK H
Sbjct: 326 CLDCQHTKYETKRIVDLLCPLLVPHRPWEDLSLDFITGLLPYHVHTAILVVVDHFSKGIH 147
Query: 1644 FILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELF 1691
+L +TA ++A +F+ V +LHG+P S++SD D +FVSHFW ELF
Sbjct: 146 LGMLPSSHTAHTVACLFIDSVAKLHGLPRSLVSDCDLLFVSHFWQELF 3
Score = 29.3 bits (64), Expect(2) = 1e-24
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 1551 SGGHSGFLRTYRRLATTLYWVGMQKRV 1577
+GGH+G +T L+ +YW GM+ V
Sbjct: 414 TGGHTGIAKTLA*LSKNIYWFGMRTDV 334
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.336 0.147 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,108,989
Number of Sequences: 63676
Number of extensions: 1467164
Number of successful extensions: 11396
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 10684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11354
length of query: 2281
length of database: 12,639,632
effective HSP length: 112
effective length of query: 2169
effective length of database: 5,507,920
effective search space: 11946678480
effective search space used: 11946678480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0074.19