TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.13
         (50 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC208774 weakly similar to UP|Q6GKX4 (Q6GKX4) At5g24170, partial...    91  1e-19
TC220820 similar to UP|O48592 (O48592) GT2 protein, partial (11%)      25  6.6

>TC208774 weakly similar to UP|Q6GKX4 (Q6GKX4) At5g24170, partial (74%)
          Length = 887

 Score = 90.9 bits (224), Expect = 1e-19
 Identities = 43/49 (87%), Positives = 47/49 (95%)
 Frame = +1

Query: 1   MEKMSKAFEKVKIMVGMEVEDEEQQAAALDNDNSFAFMDEFNRNCTLST 49
           MEKM+KAFEKVKIMVGM+ EDEEQQAAAL+N NSFAFMD+FNRNCTLST
Sbjct: 142 MEKMNKAFEKVKIMVGMDAEDEEQQAAALNNSNSFAFMDDFNRNCTLST 288


>TC220820 similar to UP|O48592 (O48592) GT2 protein, partial (11%)
          Length = 646

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 22  EEQQAAALDNDNSFAFMDEFNRNCTLS 48
           ++QQ  +LD D  F F+D  N+ CT S
Sbjct: 366 QQQQVPSLDFDQ-F*FIDSHNKKCTTS 443


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,261,463
Number of Sequences: 63676
Number of extensions: 6259
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 50
length of database: 12,639,632
effective HSP length: 26
effective length of query: 24
effective length of database: 10,984,056
effective search space: 263617344
effective search space used: 263617344
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)