BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0072a.9
(239 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203260 homologue to UP|Q41111 (Q41111) Dehydrin, partial (81%) 31 0.57
TC203830 homologue to UP|Q41111 (Q41111) Dehydrin, partial (37%) 31 0.57
TC226048 similar to UP|O24078 (O24078) Protein phosphatase 2C, p... 30 0.98
TC208520 similar to UP|Q6ZKQ7 (Q6ZKQ7) Auxin-induced protein-rel... 30 0.98
BU082048 30 1.3
TC226051 similar to UP|O24078 (O24078) Protein phosphatase 2C, p... 30 1.3
BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein... 28 2.8
TC208521 similar to UP|Q6ZKQ7 (Q6ZKQ7) Auxin-induced protein-rel... 28 4.8
TC215278 UP|143C_SOYBN (Q96452) 14-3-3-like protein C (SGF14C), ... 28 4.8
TC215276 UP|143C_SOYBN (Q96452) 14-3-3-like protein C (SGF14C), ... 28 4.8
TC234061 27 6.3
TC217617 similar to UP|Q9LYL2 (Q9LYL2) Alpha-galactosidase-like ... 27 6.3
TC203533 similar to UP|ENPL_CATRO (P35016) Endoplasmin homolog p... 27 8.3
TC227682 similar to GB|CAA55484.1|509419|ATABI1G ABI1 {Arabidops... 27 8.3
>TC203260 homologue to UP|Q41111 (Q41111) Dehydrin, partial (81%)
Length = 1057
Score = 30.8 bits (68), Expect = 0.57
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 1 MRGDRHYRQWLLKEGREGLGKEKDDHCSLVFAL 33
+R D+ WL + R G GK K + CSL+F +
Sbjct: 715 IRKDKREASWLSLQDRGGKGKGKGEWCSLIFKI 813
>TC203830 homologue to UP|Q41111 (Q41111) Dehydrin, partial (37%)
Length = 502
Score = 30.8 bits (68), Expect = 0.57
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 1 MRGDRHYRQWLLKEGREGLGKEKDDHCSLVFAL 33
+R D+ WL + R G GK K + CSL+F +
Sbjct: 256 IRKDKREASWLSLQDRGGKGKGKGEWCSLIFKI 354
>TC226048 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (39%)
Length = 754
Score = 30.0 bits (66), Expect = 0.98
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +3
Query: 3 GDRHYRQWLLKEGREGLGKEKDDHCSLVFALFIDGISDCVTYLQEINLLDGFLL---EGT 59
GDRH +QW+ E + + + +H L+ A DG+ D V+ + ++ FL+ +
Sbjct: 189 GDRHLKQWVTAEPETKVLRIEPEHDLLILA--SDGLWDKVSNQEAVDTARSFLVGNNKSQ 362
Query: 60 PLSVAYVK 67
PL +A K
Sbjct: 363 PLLLACKK 386
>TC208520 similar to UP|Q6ZKQ7 (Q6ZKQ7) Auxin-induced protein-related-like
protein, partial (26%)
Length = 726
Score = 30.0 bits (66), Expect = 0.98
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 158 CLGGYVCLFCQMSSMDSFVIL 178
C GGY C C+MSS+ S +IL
Sbjct: 101 CGGGYACCHCRMSSISSALIL 39
>BU082048
Length = 421
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -2
Query: 83 IECEGTFEENAGITIVYAFGYSLYLRVIRASTGDMIDR----MVRIDLLIVGHSEGKSRP 138
+E +G + AG+T+VY R G ++D+ +V+ + + H K+
Sbjct: 414 LESDGNYRTTAGVTLVY-----------RKPAGRLLDQKLKCIVKFSSIALNHVHAKNSA 268
Query: 139 AGLGLIRLCQGFDPCTCYLC 158
+ L+ L F T +LC
Sbjct: 267 SCSSLLPLNGAFIKITLFLC 208
>TC226051 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (86%)
Length = 1450
Score = 29.6 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 3 GDRHYRQWLLKEGREGLGKEKDDHCSLVFALFIDGISDCVTYLQEINLLDGFLL 56
GDRH +QW+ E + + + +H L+ A DG+ D V + +++ FL+
Sbjct: 761 GDRHLKQWVTAEPETKVLRIEPEHDLLILA--SDGLWDKVGNQEAVDIARSFLV 916
>BF425036 weakly similar to GP|9294274|dbj| mitochondrial protein-like
{Arabidopsis thaliana}, partial (15%)
Length = 416
Score = 28.5 bits (62), Expect = 2.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 167 CQMSSMDSFVILRRSGKTRSEMTTTEPSTWTRTSYMTRW 205
C +++ S + L R G RS + S W+RT RW
Sbjct: 300 CAVAAWTSMLALPRVGPMRSASSRGTTSAWSRTCCSRRW 184
>TC208521 similar to UP|Q6ZKQ7 (Q6ZKQ7) Auxin-induced protein-related-like
protein, partial (50%)
Length = 774
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 158 CLGGYVCLFCQMSSMDSFVIL 178
C GGY C C+MSS+ S + L
Sbjct: 189 CGGGYACCCCRMSSISSALTL 127
>TC215278 UP|143C_SOYBN (Q96452) 14-3-3-like protein C (SGF14C), partial
(45%)
Length = 730
Score = 27.7 bits (60), Expect = 4.8
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +1
Query: 124 IDLLIVGHSEGKSRPAGLGL----IRLCQGFDPCTCYLCL--GGYVCLFCQMSSMDSFVI 177
+ LLIV H + G+GL IRLC+ F C C+L L G +C+ + ++ F++
Sbjct: 472 VSLLIVYH*DVVIEH-GIGL*KITIRLCEPFILCVCFLLLETGVEICMVFGCNLVNFFIL 648
>TC215276 UP|143C_SOYBN (Q96452) 14-3-3-like protein C (SGF14C), complete
Length = 1379
Score = 27.7 bits (60), Expect = 4.8
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +1
Query: 124 IDLLIVGHSEGKSRPAGLGL----IRLCQGFDPCTCYLCL--GGYVCLFCQMSSMDSFVI 177
+ LLIV H + G+GL IRLC+ F C C+L L G +C+ + ++ F++
Sbjct: 1087 VSLLIVYH*DVVIEH-GIGL*KITIRLCEPFILCVCFLLLETGVEICMVFGCNLVNFFIL 1263
>TC234061
Length = 575
Score = 27.3 bits (59), Expect = 6.3
Identities = 20/63 (31%), Positives = 29/63 (45%)
Frame = -3
Query: 127 LIVGHSEGKSRPAGLGLIRLCQGFDPCTCYLCLGGYVCLFCQMSSMDSFVILRRSGKTRS 186
L++G +E K R G LCQ D C+ + GG CL Q + ++L T+S
Sbjct: 480 LLIGSNEYKQR----GPTTLCQMTDNCSPWQSPGGCFCLKEQPVGNEKVLLLPNFPFTQS 313
Query: 187 EMT 189
T
Sbjct: 312 SHT 304
>TC217617 similar to UP|Q9LYL2 (Q9LYL2) Alpha-galactosidase-like protein,
partial (89%)
Length = 1691
Score = 27.3 bits (59), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Frame = +2
Query: 37 GISDCVTYLQEINLLD---GFLLEGTPLSVAYVKFPCM 71
G+SDCV +LQ LLD L+ + +S+ K P M
Sbjct: 23 GLSDCVLFLQLHKLLDFLNSITLKNSVISIRNKKLPLM 136
>TC203533 similar to UP|ENPL_CATRO (P35016) Endoplasmin homolog precursor
(GRP94 homolog), partial (21%)
Length = 788
Score = 26.9 bits (58), Expect = 8.3
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Frame = -2
Query: 83 IECEGTFEENAGITIVYAFGYSLYLRVIRASTGDMID-RMVRIDL 126
I+ E TFEE + + ++L LRV+ S +++D R+ RIDL
Sbjct: 412 IKQEATFEECGLVHQLCCMFHTLILRVLYYSLSELLDNRVPRIDL 278
>TC227682 similar to GB|CAA55484.1|509419|ATABI1G ABI1 {Arabidopsis
thaliana;} , partial (51%)
Length = 1489
Score = 26.9 bits (58), Expect = 8.3
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = +1
Query: 3 GDRHYRQWLLKEGREGL-GKEKDDHCSLVFALFIDGISDCVT 43
GDR+ + W++ E + +EK+D C + L DG+ D +T
Sbjct: 916 GDRYLKPWIIPEPEVNIVRREKNDQCLI---LASDGLWDVMT 1032
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,825,189
Number of Sequences: 63676
Number of extensions: 169026
Number of successful extensions: 991
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of query: 239
length of database: 12,639,632
effective HSP length: 94
effective length of query: 145
effective length of database: 6,654,088
effective search space: 964842760
effective search space used: 964842760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0072a.9