BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0071.7
(393 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230125 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arab... 544 e-155
TC217958 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arab... 538 e-153
TC214392 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {A... 308 2e-84
TC217957 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arab... 257 6e-69
TC214325 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {A... 211 3e-55
TC209597 similar to GB|AAN73219.1|25360983|AY150294 MRS2-10 {Ara... 200 8e-52
TC219597 similar to UP|Q93ZD7 (Q93ZD7) AT3g58970/F17J16_20 (MRS2... 192 3e-49
TC214077 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {A... 167 3e-49
AW568179 128 5e-30
TC209576 similar to GB|AAN73219.1|25360983|AY150294 MRS2-10 {Ara... 121 5e-28
TC214456 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {A... 116 2e-26
BF425590 108 4e-24
BG725260 100 1e-21
CA853409 similar to GP|16209702|gb| AT3g58970/F17J16_20 {Arabido... 94 8e-20
CK768810 83 2e-16
TC234164 similar to UP|Q8H1H0 (Q8H1H0) MRS2-5, partial (12%) 77 1e-14
BE805433 76 2e-14
TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor... 29 3.2
TC203799 homologue to UP|Q8L7T3 (Q8L7T3) Ubiquitin-conjugating e... 29 4.2
TC221232 similar to UP|Q70IJ2 (Q70IJ2) Low affinity calcium tran... 28 5.5
>TC230125 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arabidopsis
thaliana;} , partial (70%)
Length = 1025
Score = 544 bits (1401), Expect = e-155
Identities = 277/314 (88%), Positives = 296/314 (94%)
Frame = +3
Query: 80 LNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKVSSLHQQQGDGQEYVSSQHDTE 139
LNLEHIKAIITAEEVLLRDPTDENV+PVV ELQRRLP++ + +Q+GDG+EY+ Q+D E
Sbjct: 3 LNLEHIKAIITAEEVLLRDPTDENVIPVVAELQRRLPRLGAGLKQEGDGKEYLGGQNDAE 182
Query: 140 AAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKS 199
AAEEDESPFEFRALEVALEAICSFLAART+ELEMAAYPALDELTSKISSRNLDRVRKLKS
Sbjct: 183 AAEEDESPFEFRALEVALEAICSFLAARTSELEMAAYPALDELTSKISSRNLDRVRKLKS 362
Query: 200 AMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSSSPVSGSGAANWFGGSPTIGSKI 259
AMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGS+SPVSGSGAANWF SPTIGSKI
Sbjct: 363 AMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSASPVSGSGAANWFAASPTIGSKI 542
Query: 260 SRASRASLATVRFDENDVEELEMLLEAYFMQIDGTFNKLTTLREYIDDTEDYINIQLDNH 319
SRASLATVR +ENDVEELEMLLEAYF +ID T NKLTTLREYIDDTEDYINIQLDNH
Sbjct: 543 ---SRASLATVRLEENDVEELEMLLEAYFSEIDHTLNKLTTLREYIDDTEDYINIQLDNH 713
Query: 320 RNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWNDNHGFMFKWVVIVSGVFSAIMFL 379
RNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPY+WN+NHG+MFKWVVIVSGVFSA+MFL
Sbjct: 714 RNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYTWNENHGYMFKWVVIVSGVFSAVMFL 893
Query: 380 LIIVYARKKGLVGS 393
+I YARKKGL+GS
Sbjct: 894 MITAYARKKGLIGS 935
>TC217958 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arabidopsis
thaliana;} , partial (75%)
Length = 1327
Score = 538 bits (1387), Expect = e-153
Identities = 293/395 (74%), Positives = 322/395 (81%), Gaps = 2/395 (0%)
Frame = +3
Query: 1 MARDGSVLPADPQAVAVVKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRI 60
MA SV+ P +V KKKT SRSWIL D G+G++LD DKYAIM VQIHARDLRI
Sbjct: 18 MALASSVVELQPSSV---KKKTAVSRSWILLDHYGKGTVLDADKYAIMRLVQIHARDLRI 188
Query: 61 LDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKVSS 120
LDPLLSYPSTILGREK IVLNLEHIKAIITA+EVLLRDPTD++VVP+VEEL+RRLPKVS+
Sbjct: 189 LDPLLSYPSTILGREKVIVLNLEHIKAIITADEVLLRDPTDDDVVPIVEELRRRLPKVSA 368
Query: 121 LHQQQGDGQEYVSSQHDTEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALD 180
+QG G+E +Q D E EE+E PFE RALEV EAICSFL ART ELE +AYPALD
Sbjct: 369 --AEQGQGKEEACAQ-DGEGGEENELPFEIRALEVLFEAICSFLDARTRELETSAYPALD 539
Query: 181 ELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK-AGSSSP 239
ELTSKISSRNLDRVRKLK AMTRLT RVQK+RDELE LLDDDDDMADLYLSRK A SSSP
Sbjct: 540 ELTSKISSRNLDRVRKLKCAMTRLTIRVQKIRDELENLLDDDDDMADLYLSRKLAASSSP 719
Query: 240 VSGSGAANWFGGSPTIGSKISRASRASLATVRFDENDVEELEMLLEAYFMQIDGTFNKLT 299
S S A W GSP GSK ++SRAS TV+ ENDVEELEMLLEAYFMQIDGT NKL
Sbjct: 720 TSSSDAPYWLYGSPNTGSKRHKSSRASGTTVQ-RENDVEELEMLLEAYFMQIDGTLNKLA 896
Query: 300 TLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWN-DN 358
TLREYIDDTEDYINIQLDNHRNQLIQLELF+S+GTVC+S YSLVAAIFGMNIPY+W
Sbjct: 897 TLREYIDDTEDYINIQLDNHRNQLIQLELFISAGTVCMSLYSLVAAIFGMNIPYTWKAPG 1076
Query: 359 HGFMFKWVVIVSGVFSAIMFLLIIVYARKKGLVGS 393
H +FKWVVI G+ A +FL I+ YAR+KGLVGS
Sbjct: 1077HEHVFKWVVIFGGMVCASLFLSIVSYARRKGLVGS 1181
>TC214392 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
thaliana;} , partial (67%)
Length = 1330
Score = 308 bits (790), Expect = 2e-84
Identities = 180/403 (44%), Positives = 248/403 (60%), Gaps = 22/403 (5%)
Frame = +2
Query: 5 GSVLPADPQAVAVVKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPL 64
G + + ++ ++KK R W++ D G+ +++ K+AIM R + ARDLRILDPL
Sbjct: 14 GRMRGGEERSTTGIRKKGSGVRQWLVLDGKGETEVVEAGKHAIMRRTGLPARDLRILDPL 193
Query: 65 LSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKVSSLHQQ 124
LSYPST+LGRE+AIV+NLEHIKAIITA+E+LL + D +V P + ELQ R+ + H
Sbjct: 194 LSYPSTLLGRERAIVINLEHIKAIITAQELLLLNSRDPSVTPFLHELQARIIR----HHN 361
Query: 125 QGDGQEYVSSQHDTEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTS 184
Q D + + PFEF +LE LEA CS L LE A+PALD+LTS
Sbjct: 362 QADADPNPNPNDAIKIL-----PFEFVSLEACLEAACSVLENEAKTLEQEAHPALDKLTS 526
Query: 185 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSSSPVSG-- 242
KIS+ NL+RVR++KS + +T RVQKVRDELE LLDDD+DMA++YLS K + G
Sbjct: 527 KISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLSEKLAEQQVLDGDV 706
Query: 243 ------------SGAANWFGGSP-------TIGSKISRASRASLATVRFDENDVEELEML 283
S A N P + + + R S + A + + DVEELEML
Sbjct: 707 VVVDDDDDDDDTSSADNGDLLQPHRTAPELSFDNVLGRDSASFSAVTK--QLDVEELEML 880
Query: 284 LEAYFMQIDGTFNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLV 343
LEAYF+QIDGT NKL+TLREY+DDTEDYINI LD+ +N L+Q+ + L++ T+ +S + +V
Sbjct: 881 LEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVV 1060
Query: 344 AAIFGMNIPYS-WNDNHGFMFKWVVIVSGVFSAIMFLLIIVYA 385
A IFGMNI ++D M +++ V G + +FL ++ A
Sbjct: 1061AGIFGMNIHIELFDDQKAGMTQFLWTVGGSTAGTIFLYVVAIA 1189
>TC217957 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arabidopsis
thaliana;} , partial (44%)
Length = 1049
Score = 257 bits (657), Expect = 6e-69
Identities = 136/185 (73%), Positives = 148/185 (79%), Gaps = 2/185 (1%)
Frame = +3
Query: 211 VRDELEQLLDDDDDMADLYLSRKA-GSSSPVSGSGAANWFGGSPTIGSKISRASRASLAT 269
+RDELE LLDDDDDMADLYLSRK SSSP S S A W GSP GSK ++SR S T
Sbjct: 321 IRDELESLLDDDDDMADLYLSRKLDASSSPTSSSDAPYWLYGSPNTGSKRHKSSRVSGTT 500
Query: 270 VRFDENDVEELEMLLEAYFMQIDGTFNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELF 329
V+ ENDVEELEMLLEAYFMQIDGT NKL TLREYIDDTEDYINIQLDNHRNQLIQLELF
Sbjct: 501 VQ-RENDVEELEMLLEAYFMQIDGTLNKLATLREYIDDTEDYINIQLDNHRNQLIQLELF 677
Query: 330 LSSGTVCLSFYSLVAAIFGMNIPYSWN-DNHGFMFKWVVIVSGVFSAIMFLLIIVYARKK 388
+S GTVC+S YSLVAAIFGMNIPY+W H +FKWVVI G+ A +FL I+ YAR+K
Sbjct: 678 ISVGTVCMSLYSLVAAIFGMNIPYTWKAPGHEHVFKWVVIFGGMVCASLFLSIVSYARRK 857
Query: 389 GLVGS 393
GLVGS
Sbjct: 858 GLVGS 872
Score = 34.3 bits (77), Expect = 0.10
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 193 RVRKLKSAMTRLTARVQKV 211
RVRKLK AMTRLT RVQKV
Sbjct: 3 RVRKLKCAMTRLTIRVQKV 59
>TC214325 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
thaliana;} , partial (48%)
Length = 1186
Score = 211 bits (538), Expect = 3e-55
Identities = 130/301 (43%), Positives = 184/301 (60%), Gaps = 15/301 (4%)
Frame = +1
Query: 100 TDENVVPVVEELQRRLPKVSSLHQQQGDGQEYVSSQHDTEAAEEDESPFEFRALEVALEA 159
+D +V P ++ELQ R+ + HQ D ++ + +A + PFEF ALE LEA
Sbjct: 55 SDLSVTPFLQELQARI--LRHHHQTLAD-----ANPNPDDAIKI--LPFEFVALEACLEA 207
Query: 160 ICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLL 219
CS L LE A+PALD+LTSKIS+ NL+RVR++KS + +T RVQKVRDELE LL
Sbjct: 208 ACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLL 387
Query: 220 DDDDDMADLYLSRKAG----------SSSPVSGSGAANWFGGSPTIGSKISRASRASLAT 269
DDDDDMA++YLS K +SS + ++ + + R S + +
Sbjct: 388 DDDDDMAEMYLSEKLAEQDDLEKAEDTSSADDVDDHIDRTAPEISLDNVVGRDSHGTRDS 567
Query: 270 VRFD----ENDVEELEMLLEAYFMQIDGTFNKLTTLREYIDDTEDYINIQLDNHRNQLIQ 325
+ + DVEELEMLLEAYF+QIDGT NKL+TLREY+DDTEDYINI LD+ +N L+Q
Sbjct: 568 ATYSAVTKQLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQ 747
Query: 326 LELFLSSGTVCLSFYSLVAAIFGMNIPYS-WNDNHGFMFKWVVIVSGVFSAIMFLLIIVY 384
+ + L++ T+ +S + +VA IFGMNI ++D M +++ V G + +FL ++
Sbjct: 748 MGVMLTTATLVVSAFVVVAGIFGMNIHIELFDDQKAGMTQFLWTVGGSTAGTIFLYVVAI 927
Query: 385 A 385
A
Sbjct: 928 A 930
>TC209597 similar to GB|AAN73219.1|25360983|AY150294 MRS2-10 {Arabidopsis
thaliana;} , partial (55%)
Length = 1006
Score = 200 bits (509), Expect = 8e-52
Identities = 118/251 (47%), Positives = 157/251 (62%), Gaps = 21/251 (8%)
Frame = +3
Query: 162 SFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 221
+FL ++ ELE+ AYP LDELTSKIS+ NL+RVR+LKS + LT RVQKVRDE+EQL+DD
Sbjct: 3 TFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDD 182
Query: 222 DDDMADLYLSRKA--------GSSSPV---SGSGAANWFGGSPTIGS----------KIS 260
D DMA++YL+ K G S V S GA+ SP I+
Sbjct: 183 DGDMAEMYLTEKKRRMELSFYGDQSMVGYKSVDGASISAPVSPVSSPLDSRKLEKCFSIA 362
Query: 261 RASRASLATVRFDENDVEELEMLLEAYFMQIDGTFNKLTTLREYIDDTEDYINIQLDNHR 320
R+ S+ + +EELEMLLEAYF+ ID T NKLT+L+EYIDDTED+INIQLDN R
Sbjct: 363 RSRHESMRSSESTTESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVR 542
Query: 321 NQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWNDNHGFMFKWVVIVSGVFSAIMFLL 380
NQLIQ EL L++ T ++ + +VA IFGMN D F+WV+I++GV +F
Sbjct: 543 NQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIELFDVPS-AFQWVLIITGVCGVFIFSA 719
Query: 381 IIVYARKKGLV 391
+ + + + L+
Sbjct: 720 FVWFFKYRRLM 752
>TC219597 similar to UP|Q93ZD7 (Q93ZD7) AT3g58970/F17J16_20 (MRS2-4), partial
(40%)
Length = 1003
Score = 192 bits (487), Expect = 3e-49
Identities = 105/213 (49%), Positives = 146/213 (68%), Gaps = 5/213 (2%)
Frame = +2
Query: 186 ISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSSSPVS---- 241
+S++NL+ VR LKS +TRL ARVQKVRDE+E LLDD++DMA LYL+RK +
Sbjct: 5 VSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAQLYLTRKWLQNQQFEEAHL 184
Query: 242 GSGAANWFGGSPTIGSKISRASRASLATVRF-DENDVEELEMLLEAYFMQIDGTFNKLTT 300
G+ +N F + ++ SL T + D+N+VE+LEMLL+AYFMQ+DGT NK+ +
Sbjct: 185 GATTSNNFPNTSRSVRRLGSNRSESLVTCHYEDDNNVEDLEMLLDAYFMQLDGTRNKILS 364
Query: 301 LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWNDNHG 360
+REYIDDTEDY+NIQLDNHRN+LIQL+L L+ + ++ +++A FGMNIP + G
Sbjct: 365 VREYIDDTEDYVNIQLDNHRNELIQLQLTLTIASFAIAIETMIAGAFGMNIPCNLYHIDG 544
Query: 361 FMFKWVVIVSGVFSAIMFLLIIVYARKKGLVGS 393
+ +V I S ++FLLI+ YAR K L+GS
Sbjct: 545 VFWPFVWITSAA-CVLLFLLILAYARWKKLLGS 640
>TC214077 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
thaliana;} , partial (50%)
Length = 1125
Score = 167 bits (423), Expect(2) = 3e-49
Identities = 94/186 (50%), Positives = 125/186 (66%)
Frame = +3
Query: 18 VKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKA 77
++KK R W++ D G+ +++ K+AIM R + ARDLRILDPLLSYPST+LGRE+A
Sbjct: 60 IRKKGSGVRQWLVLDGRGETEVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTLLGRERA 239
Query: 78 IVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKVSSLHQQQGDGQEYVSSQHD 137
IV+NLEHIKAIITA EVLL + D +V P ++ELQ R+ + HQ D ++ +
Sbjct: 240 IVINLEHIKAIITAHEVLLLNSRDPSVTPFLQELQARI--LRHHHQTLAD-----ANPNP 398
Query: 138 TEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKL 197
+A + PFEF ALE LEA CS L LE A+PALD+LTSKIS+ NL+RVR++
Sbjct: 399 DDAIK--ILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQI 572
Query: 198 KSAMTR 203
KS + R
Sbjct: 573 KSRLVR 590
Score = 48.1 bits (113), Expect = 7e-06
Identities = 22/26 (84%), Positives = 25/26 (95%)
Frame = +2
Query: 276 DVEELEMLLEAYFMQIDGTFNKLTTL 301
DVEELEMLLEAYF+QIDGT NKL+T+
Sbjct: 806 DVEELEMLLEAYFVQIDGTLNKLSTV 883
Score = 46.2 bits (108), Expect(2) = 3e-49
Identities = 22/31 (70%), Positives = 26/31 (82%)
Frame = +1
Query: 196 KLKSAMTRLTARVQKVRDELEQLLDDDDDMA 226
KL++ + +T RVQKVRDELE LLDDDDDMA
Sbjct: 568 KLRAD*SAITGRVQKVRDELEHLLDDDDDMA 660
>AW568179
Length = 433
Score = 128 bits (321), Expect = 5e-30
Identities = 70/96 (72%), Positives = 76/96 (78%)
Frame = +2
Query: 1 MARDGSVLPADPQAVAVVKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRI 60
MA SV+ P +V KKKT SRSWIL D G+G++LD DKYAIM VQIHARDLRI
Sbjct: 116 MALASSVVELQPSSV---KKKTAVSRSWILLDHYGKGTVLDADKYAIMRLVQIHARDLRI 286
Query: 61 LDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLL 96
LDPLLSYPSTILGREK IVLNLEHIKAIITA+EV L
Sbjct: 287 LDPLLSYPSTILGREKVIVLNLEHIKAIITADEVPL 394
>TC209576 similar to GB|AAN73219.1|25360983|AY150294 MRS2-10 {Arabidopsis
thaliana;} , partial (35%)
Length = 763
Score = 121 bits (304), Expect = 5e-28
Identities = 71/145 (48%), Positives = 87/145 (59%), Gaps = 6/145 (4%)
Frame = +2
Query: 18 VKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKA 77
+KK+ Q RSWI D G ++VDK+ +M R + ARDLR+LDPL YPSTILGREKA
Sbjct: 329 LKKRGQGLRSWIRVDTSGNSQAIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKA 508
Query: 78 IVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPK--VSSLHQQQGDGQEYVSSQ 135
IV+NLE I+ IITA+EVLL + D V+ V ELQRRL V + Q
Sbjct: 509 IVVNLEQIRCIITADEVLLLNSLDSYVLHYVMELQRRLTTTGVGEVXQSXSSDMNRKRGS 688
Query: 136 HDTE----AAEEDESPFEFRALEVA 156
+ E + D PFEFRALEVA
Sbjct: 689 RNFENVFSNSSPDYLPFEFRALEVA 763
>TC214456 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
thaliana;} , partial (22%)
Length = 421
Score = 116 bits (290), Expect = 2e-26
Identities = 56/98 (57%), Positives = 74/98 (75%)
Frame = +1
Query: 18 VKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKA 77
++KK R W++ D G+ +++ K+AIM R + ARDLRILDPLLSYPST+LGRE+A
Sbjct: 16 IRKKGSGVRQWLVLDGRGETEVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTLLGRERA 195
Query: 78 IVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRL 115
IV+NLEHIKAIITA EVLL + D +V P ++ELQ R+
Sbjct: 196 IVINLEHIKAIITAHEVLLLNSRDPSVTPFLQELQARI 309
>BF425590
Length = 442
Score = 108 bits (270), Expect = 4e-24
Identities = 70/156 (44%), Positives = 91/156 (57%)
Frame = +2
Query: 78 IVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKVSSLHQQQGDGQEYVSSQHD 137
+V+NL+ IKAIITA +VLL D +V + +LQ R+ L + S D
Sbjct: 2 MVMNLDPIKAIITAHQVLLLISRDPSVSRFLHDLQARI-----LRHHHHTLADACPSPDD 166
Query: 138 TEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKL 197
PFEF ALE L+A CS L + L A+PALD+LTS IS+ N +RVR +
Sbjct: 167 AIKI----LPFEFVALEACLDAACSVLYNKAKTL*HEAHPALDKLTSTISALN*ERVRHI 334
Query: 198 KSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK 233
S + +T RV KV+DEL LLDDD+DMAD+YLS K
Sbjct: 335 NSRLVCITGRVHKVKDEL*HLLDDDEDMADMYLSEK 442
>BG725260
Length = 373
Score = 100 bits (248), Expect = 1e-21
Identities = 48/74 (64%), Positives = 59/74 (78%), Gaps = 1/74 (1%)
Frame = +3
Query: 321 NQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWN-DNHGFMFKWVVIVSGVFSAIMFL 379
+ L+QLELF+S+GTVC+S YSLVAAIFGMNIPY+W H +FKWVVI G+ A +FL
Sbjct: 96 HSLVQLELFISAGTVCMSLYSLVAAIFGMNIPYTWKAPGHEHVFKWVVIFGGMVCASLFL 275
Query: 380 LIIVYARKKGLVGS 393
I+ YAR+KGLVGS
Sbjct: 276 SIVSYARRKGLVGS 317
>CA853409 similar to GP|16209702|gb| AT3g58970/F17J16_20 {Arabidopsis
thaliana}, partial (16%)
Length = 542
Score = 94.4 bits (233), Expect = 8e-20
Identities = 49/90 (54%), Positives = 63/90 (69%)
Frame = +3
Query: 10 ADPQAVAVVKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPS 69
A A+ KKKT + R W+ FD G+ L++++K AI+ I ARDLRIL P+ S+ S
Sbjct: 246 AGSSALTKAKKKTGNVRLWMRFDRSGRSELVELEKNAIVRHAAIPARDLRILGPVFSHSS 425
Query: 70 TILGREKAIVLNLEHIKAIITAEEVLLRDP 99
IL REKA+V+NLE IKAI+TAEEVLL DP
Sbjct: 426 NILAREKAMVVNLEFIKAIVTAEEVLLLDP 515
>CK768810
Length = 652
Score = 82.8 bits (203), Expect = 2e-16
Identities = 42/94 (44%), Positives = 61/94 (64%)
Frame = +1
Query: 298 LTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWND 357
L L+EYIDDTED+INIQLDN RNQLIQ EL L++ T ++ + +VA IFGMN D
Sbjct: 43 LFQLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIQLFD 222
Query: 358 NHGFMFKWVVIVSGVFSAIMFLLIIVYARKKGLV 391
F+WV+I++G+ +F + + + + L+
Sbjct: 223 VPS-AFQWVLIITGICGVFIFSAFVWFFKYRRLM 321
>TC234164 similar to UP|Q8H1H0 (Q8H1H0) MRS2-5, partial (12%)
Length = 414
Score = 77.0 bits (188), Expect = 1e-14
Identities = 37/88 (42%), Positives = 59/88 (67%)
Frame = +3
Query: 301 LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWNDNHG 360
L+EYIDDTED+INI+L N +NQLIQ EL L++ T+ + ++ VA +FGMN + D +
Sbjct: 147 LKEYIDDTEDFINIKLGNIQNQLIQFELLLTAATLVAAVFAAVAGVFGMNFETTVFD-YP 323
Query: 361 FMFKWVVIVSGVFSAIMFLLIIVYARKK 388
F WV++++G+ ++ ++ Y R K
Sbjct: 324 SGFHWVLVITGIACIALYFALLFYFRYK 407
>BE805433
Length = 420
Score = 76.3 bits (186), Expect = 2e-14
Identities = 52/123 (42%), Positives = 66/123 (53%), Gaps = 21/123 (17%)
Frame = +2
Query: 204 LTARVQKVRDELEQLLDDDDDMADLYLSRKA--------GSSSPV---SGSGAANWFGGS 252
LT RVQKVRDE+EQL+DDD DMA++YL+ K G S V S GA+ S
Sbjct: 2 LTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMVGYKSVDGASISAPVS 181
Query: 253 PTIGS----------KISRASRASLATVRFDENDVEELEMLLEAYFMQIDGTFNKLTTLR 302
P I+R+ S+ + +EELEMLLEAYF+ ID T NKLT++
Sbjct: 182 PVSSPPDSRKLEKSFSIARSRHESMRSSESTTESIEELEMLLEAYFVVIDSTLNKLTSVN 361
Query: 303 EYI 305
I
Sbjct: 362 TVI 370
>TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor SC35
(CG5442-PB) (LD32469p), partial (6%)
Length = 1532
Score = 29.3 bits (64), Expect = 3.2
Identities = 52/284 (18%), Positives = 105/284 (36%), Gaps = 8/284 (2%)
Frame = +2
Query: 109 EELQRRLPKVSSLHQQQGDGQEYVSSQHDTEAAEEDESPFEFRALEVALEAICSFLAART 168
EE+++ ++ L D E + A D + A E I + A
Sbjct: 350 EEIKKLTAELDGLRSDGADRSEKIEELQREVAQSRDAAK--------ATEVIAARAADLE 505
Query: 169 TELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL--LDDDDDMA 226
TE+ + + E+T+ +R +L+ + +RV+ + +EL L + + D+
Sbjct: 506 TEVARLHHDMVAEMTAAEEARA--DAAELRKVLGETESRVESLENELAGLKKVKAESDVR 679
Query: 227 DLYLSRKAGSSSPVSGSGAANWFGGSPTIGSKISRASRASLATVRFDENDVEELEMLLEA 286
L RK G KI R ++ VEELE +
Sbjct: 680 VRDLERKIGVLETKEIEERNKRIRFEEETRDKIDEKERE----IKGYRQKVEELEKVAAE 847
Query: 287 YFMQIDGTFNKLTTLREYIDDTEDYIN------IQLDNHRNQLIQLELFLSSGTVCLSFY 340
++D + L E + ++E+ + +QL + ++ + L+ V
Sbjct: 848 KKTELDELVKQKLRLEEALRESEEKVTGLESSILQLRKEAKEAERVIISLNEKAV----E 1015
Query: 341 SLVAAIFGMNIPYSWNDNHGFMFKWVVIVSGVFSAIMFLLIIVY 384
++ + G+N +S G +W V+ +G A++ ++Y
Sbjct: 1016TVESIDRGLNGVHS-EGKKGLKLQWPVVAAGSTGAVVAAAAVIY 1144
>TC203799 homologue to UP|Q8L7T3 (Q8L7T3) Ubiquitin-conjugating enzyme
(At1g50490), partial (86%)
Length = 1178
Score = 28.9 bits (63), Expect = 4.2
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 1/72 (1%)
Frame = -3
Query: 218 LLDDDDDMADLY-LSRKAGSSSPVSGSGAANWFGGSPTIGSKISRASRASLATVRFDEND 276
LL D ADLY LS SS + S AA WF G GSK+ + R S + +
Sbjct: 1005 LLQD*YQFADLYNLSTIFLYSS*LLQSCAACWFSGELMFGSKLLQKKRRSKKQKQKRKQT 826
Query: 277 VEELEMLLEAYF 288
E + + +E +F
Sbjct: 825 *ESI*I*IECFF 790
>TC221232 similar to UP|Q70IJ2 (Q70IJ2) Low affinity calcium transporter CAX2
(Fragment), partial (45%)
Length = 1275
Score = 28.5 bits (62), Expect = 5.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2
Query: 224 DMADLYLSRKAGSSSPVSGSGAANWFGGSPTIGSKISRASRASLATVRFD 273
D D+ L GSS+ +S A W IG+ I A+ SLAT FD
Sbjct: 923 DKLDISLGVAIGSSTQISMFVPAGWLFYLLMIGTHIYLAAGRSLATSSFD 1072
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,187,864
Number of Sequences: 63676
Number of extensions: 172770
Number of successful extensions: 1015
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of query: 393
length of database: 12,639,632
effective HSP length: 99
effective length of query: 294
effective length of database: 6,335,708
effective search space: 1862698152
effective search space used: 1862698152
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0071.7