BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.8
(611 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221865 124 2e-28
TC231922 118 7e-27
TC211809 84 2e-26
TC222557 74 3e-26
TC213061 116 3e-26
CO979823 114 1e-25
TC233392 106 3e-23
CO986021 104 1e-22
BE660043 83 2e-20
TC231841 95 8e-20
TC233956 93 3e-19
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 92 7e-19
CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigr... 91 2e-18
CO984521 89 4e-18
TC222789 87 3e-17
TC222857 86 5e-17
BM891241 70 6e-16
BM891637 80 2e-15
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 80 3e-15
CA851073 80 3e-15
>TC221865
Length = 1045
Score = 124 bits (310), Expect = 2e-28
Identities = 73/252 (28%), Positives = 118/252 (45%), Gaps = 3/252 (1%)
Frame = -3
Query: 361 VGNGDSTQFWLEDWSGKGK-LDGRYHRLYNLSRQKYSRIVDMGEWVGAGWRWKFSWRRNL 419
VG GD +FW + G+G+ L +Y R+Y +S Q+ I +G W WKF WRR L
Sbjct: 923 VGCGDKFRFWEDKLVGEGETLMRKYPRMYQISCQQQQLIQQVGSHTETTWEWKFQWRRPL 744
Query: 420 SAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAYLFMQGD--EGEPDAAL 477
E E++ + ++ +D W W G Y+ +AY MQ + + D A
Sbjct: 743 FDNEVDTTIGFLEDISRFPIHRHLTDCWVWKSEPNGHYSTRSAYHLMQHEAAKANTDPAF 564
Query: 478 KRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLS 537
+ +W +P+ FA +L+ +R+P + L+RR V + C C E ++HL S
Sbjct: 563 EEIWKLKIPAKAAIFA*RLVKDRLPTKNNLRRRQV--QLNGTLCLFCRNYEEEASHLFFS 390
Query: 538 CSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEYAVWLALTWSVWLL 597
C+K +W + +N+ A S P HFL Q + W+ALT+++W
Sbjct: 389 CTKTQPVWWESLSWINTSGAFSANP-RHHFLQHSFGLLGLKQYNR*KCWWVALTFTIWQH 213
Query: 598 RNEILFGTAVYD 609
RN +F ++
Sbjct: 212 RNRTIFSNEPFN 177
>TC231922
Length = 803
Score = 118 bits (296), Expect = 7e-27
Identities = 76/257 (29%), Positives = 112/257 (43%), Gaps = 3/257 (1%)
Frame = -3
Query: 334 SPWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKG-KLDGRYHRLYNLSR 392
S WW+D++ + + + VG GD +FW + W +G L +Y++LY +SR
Sbjct: 777 SHWWKDLRRL-YNQPDFHSIHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISR 601
Query: 393 QKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPN 452
Q I MG++ W+F WRR L E E+ + + D W +
Sbjct: 600 Q*NLTISKMGKFSQNARSWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKAD 421
Query: 453 SEGFYTVNNAY-LFMQGDEGEPDAAL-KRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRR 510
S G Y+ +AY L M P + + LW +P F+W+L L+R+P R L RR
Sbjct: 420 SSGVYSTKSAYRLLMPSISPAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRR 241
Query: 511 GVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHF 570
+ D+ C LC + E + HL C GLW + I A P S HF+ F
Sbjct: 240 SI--PIQDIMCPLCGCQHEEAGHLFFHCKMTKGLWWESMRWIRVIGALPADPAS-HFIQF 70
Query: 571 PHHGRNATQRHGEYAVW 587
G AT H +W
Sbjct: 69 -CDGFAATSNHSRRGMW 22
>TC211809
Length = 895
Score = 84.0 bits (206), Expect(2) = 2e-26
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Frame = +2
Query: 451 PNSEGFYTVNNAYLFMQGDEGE--PDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQ 508
P G Y+ +AY + GE D LW +PS FAW+L+ +R+P L+
Sbjct: 188 PTLFGNYSTKSAYRLLMEATGEFPVDRTYVDLWNLKIPSKAIVFAWRLIKDRLPTWTNLR 367
Query: 509 RRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFL 568
R V +D C LC+ E +AHL C+K LW + +NS+ A P +HFL
Sbjct: 368 VRQV--ELNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNP-KDHFL 538
Query: 569 HFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILFGTAVYD 609
+ +W+ALTW +W RN ++F +D
Sbjct: 539 QHDNRSAGGVXARRWKCLWVALTWVIWKHRNGVVFHNHSFD 661
Score = 53.9 bits (128), Expect(2) = 2e-26
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +1
Query: 389 NLSRQKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWR 448
++S Q++ I MG GW FSWRR L E G + EE+ +V + Q+R DVW
Sbjct: 1 HISNQQHQSISSMGSQEDTGWE*NFSWRRPLFDNEIGMAAEFLEELAQVTIHQDRPDVWV 180
Query: 449 WPPNS 453
W +S
Sbjct: 181 WKADS 195
>TC222557
Length = 1002
Score = 74.3 bits (181), Expect(2) = 3e-26
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Frame = +1
Query: 474 DAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAH 533
D AL+ LW +P FAW+L+ RIP + L RR V +++ C C+ + E ++H
Sbjct: 421 DEALEDLWQLKIPLKATTFAWRLIKERIPTKGNLWRRRV--QLNNLMCPFCNRQEEEASH 594
Query: 534 LMLSCSKVLGLW--EACNTRLNSIYAPSLGPISEHFLH-FPHHGRNATQRHGEYAVWLAL 590
L +C ++L LW T+ +++P P + H G++ R + W+AL
Sbjct: 595 LFFNCPRILPLWWESLAWTKTVGVFSPI--PRQNYMQHTLISKGKHLQARWKCW--WVAL 762
Query: 591 TWSVWLLRNEILF 603
TWS+W RN I+F
Sbjct: 763 TWSIWRHRNRIVF 801
Score = 63.2 bits (152), Expect(2) = 3e-26
Identities = 34/112 (30%), Positives = 54/112 (47%), Gaps = 1/112 (0%)
Frame = +3
Query: 353 FEAGLAKVVGNGDSTQFWLEDWSGKGK-LDGRYHRLYNLSRQKYSRIVDMGEWVGAGWRW 411
F++ + VG GD +FW + W + + L +Y RLYN+S Q+ I+ MG W W
Sbjct: 51 FQSAIDWKVGCGDKIRFWEDCWLMEQEPLRAKYPRLYNISCQQQKLILVMGFHSANVWEW 230
Query: 412 KFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAY 463
K WRR+L E +++ + + D W W P G ++ +AY
Sbjct: 231 KLEWRRHLFDNEVQAAASFLDDISWGHIDRWTLDCWVWKPEPNGQFSTRSAY 386
>TC213061
Length = 823
Score = 116 bits (290), Expect = 3e-26
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Frame = +2
Query: 404 WVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAY 463
++ GW W+F WRR L E + +EV + + D W W S G Y +AY
Sbjct: 5 FIETGWEWQFQWRRPLFDSEIEMLVAFIQEVEGHKIRSDIEDQWVWAAESSGSYLARSAY 184
Query: 464 LFMQG--DEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSC 521
++ E E D K LW VP V FAW+L+ + +P R L+R+ V + C
Sbjct: 185 RVIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNLRRKRV--ELHEYVC 358
Query: 522 ALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQRH 581
LC E+++HL CSK+L +W + + + A FPHH R+ +H
Sbjct: 359 PLCRSMDESASHLFFHCSKILPIWWESLSWVKLVGA------------FPHHPRHHFHQH 502
Query: 582 GEYAV-----------WLALTWSVWLLRNEILFGTAVYD 609
WLALTW++W RN+I+F A ++
Sbjct: 503 SHEVYQGLQGNRWKWWWLALTWTIWKHRNDIIFSNATFN 619
>CO979823
Length = 853
Score = 114 bits (285), Expect = 1e-25
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Frame = -2
Query: 398 IVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFY 457
I +G +GW + +WRR E E+ + + R D W W P G Y
Sbjct: 843 IQQLGTITNSGWE*QLNWRRPXXDSEIAMADSFLGEITQQQIHPQREDKWLWKPEPGGHY 664
Query: 458 TVNNAYLFMQGD--EGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDA 515
+ + Y + G+ E DA +W +P+ FAW+L+ +R+P + L+RR V+
Sbjct: 663 STKSGYHVLWGELTEEIQDADFAEIWKLKIPTKAAVFAWRLVRDRLPTKSNLRRRQVM-- 490
Query: 516 QSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGR 575
D+ C LC+ E +AHL +C+K L LW + +N A P +HFL +
Sbjct: 489 VQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWESMSWVNLKTAMPQTP-RQHFLQYGTDIA 313
Query: 576 NATQRHGEYAVWLALTWSVWLLRNEILFGTAVY 608
+ + W+ALTW++W RN+++F A +
Sbjct: 312 DGLKSKRWKCWWIALTWTIWQHRNKVVFQNATF 214
>TC233392
Length = 1145
Score = 106 bits (265), Expect = 3e-23
Identities = 59/174 (33%), Positives = 92/174 (51%), Gaps = 5/174 (2%)
Frame = -1
Query: 441 QNRSDVWRWPPNSEGFYTVNNAYLFMQGD-EGEP-DAALKRLWAAPVPSNVKAFAWKLML 498
Q D W W Y+ +AY +QG EGE D AL+ LW +P+ FAW+L+
Sbjct: 668 QQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGALQDLWKLKIPAKASIFAWRLIR 489
Query: 499 NRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAP 558
+R+P + L RR V+ D C C E ++H+ L C+K+ LW T + S+
Sbjct: 488 DRLPTKSNLHRRQVV--LEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVRSL--- 324
Query: 559 SLGPIS--EHFLHFPHHGRNATQRHGEYAV-WLALTWSVWLLRNEILFGTAVYD 609
+ PI+ +HFL HG ++R+ + W+ALTWS+W RN+++F A ++
Sbjct: 323 GVSPINKRQHFLQHV-HGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQFN 165
>CO986021
Length = 900
Score = 104 bits (260), Expect = 1e-22
Identities = 63/200 (31%), Positives = 92/200 (45%), Gaps = 5/200 (2%)
Frame = -1
Query: 409 WRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAY--LFM 466
W W F WRRNL E +++ + + Q D W + G Y+ +AY L
Sbjct: 891 WNWDFKWRRNLFDHENEQAIAFMDDISAISIHQQLQDSMLWKADPTGIYSTKSAYRLLLP 712
Query: 467 QGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHE 526
G+ + K LW +P + F+W+L +R+ R L RR V A D+ C LC
Sbjct: 711 NNRPGQHSSNFKILWKLKIPPRAELFSWRLFRDRLSIRANLLRRHV--ALQDIMCPLCGN 538
Query: 527 EVETSAHLMLSCSKVLGL-WEACN-TRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEY 584
E + HL C +GL WE+ N TR + L + HF+ F G A + H
Sbjct: 537 HQEEAGHLFFHCRMTIGLWWESMNWTRTLGAF---LDDPAAHFIQF-SDGFGAQRNHNRR 370
Query: 585 AV-WLALTWSVWLLRNEILF 603
+ W+ALT ++W RN +LF
Sbjct: 369 CLWWIALTSTIWQHRNSLLF 310
>BE660043
Length = 714
Score = 82.8 bits (203), Expect(2) = 2e-20
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = -2
Query: 432 EEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAYLFMQG--DEGEPDAALKRLWAAPVPSNV 489
E++ L Q+ +D W W P S G+Y+ NAY+ +QG +EG D K LW +P+
Sbjct: 665 EDISHTALQQHAADSWVWKPESNGYYSSRNAYILLQGNSEEGNMDDIFKDLWKLKIPAKA 486
Query: 490 KAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSK 540
FA +L+ +R+P + +++R + +D C C + ET++HL CSK
Sbjct: 485 SIFAGRLIRDRLPTKSNMRKRQI--DINDSLCPFCSIKEETASHLFFDCSK 339
Score = 34.7 bits (78), Expect(2) = 2e-20
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -1
Query: 568 LHFPHH--GRNATQRHGEYAVW-LALTWSVWLLRNEILFGTAVYD 609
LHF H G +++ + W +AL WS+W RN+I+F A ++
Sbjct: 270 LHFLQHNNGMKGGKKYNRWKCWWVALNWSIWQHRNKIIFTNAPFN 136
>TC231841
Length = 791
Score = 95.1 bits (235), Expect = 8e-20
Identities = 52/170 (30%), Positives = 85/170 (49%), Gaps = 3/170 (1%)
Frame = +3
Query: 443 RSDVWRWPPNSEGFYTVNNAYLFMQGD--EGEPDAALKRLWAAPVPSNVKAFAWKLMLNR 500
+ D W W + G YT +AY + G+ E + D + LW +PS + FAW+L+ +R
Sbjct: 57 QGDQWVWKADPSGQYTAKSAYGVLWGEMFEEQQDGVFEELWKLKLPSKITIFAWRLIRDR 236
Query: 501 IPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSL 560
+P R L+R+ + D C C E++AHL CS++ +W + +N +
Sbjct: 237 LPTRSNLRRKQI--EVDDPRCPFCRSAEESAAHLFFHCSRIAPVWWESLSWVNLLGVFPN 410
Query: 561 GPISEHFLHFPHHGRNATQRHGEYA-VWLALTWSVWLLRNEILFGTAVYD 609
P +HFL +G A R + WLALTW++W RN ++F ++
Sbjct: 411 HP-RQHFLQH-IYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFN 554
>TC233956
Length = 757
Score = 93.2 bits (230), Expect = 3e-19
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
Frame = +2
Query: 429 KMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAYLFMQG---DEGEPDAALKRLWAAPV 485
K + + E+ L N +D W W S G + +AY ++ DEG+ K+LW V
Sbjct: 11 KFIDHIHEIRLNNNFNDTWVWRAESTGIISTKSAYQVIKSELDDEGQ-HLGFKKLWEIKV 187
Query: 486 PSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLW 545
P +F W+L+ +R+P + L +R I + D+ C CH + ET++HL +C K++ LW
Sbjct: 188 PPKALSFVWRLLWDRLPTKDNLIKRQ-IQVEDDL-CPFCHSQSETASHLFFTCGKIMPLW 361
Query: 546 EACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILFGT 605
+ + P+ H+ + W+A+T S+W LRN+I+F
Sbjct: 362 WEFLSWVKEDKVFHCRPMDNFLQHYSSAASKVSNTR-RTMWWIAVTNSIWRLRNDIIFQN 538
Query: 606 AVYD 609
D
Sbjct: 539 QTVD 550
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 92.0 bits (227), Expect = 7e-19
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Frame = +2
Query: 242 SYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGGLGLKDWLPFNTAV 301
S+F +P + + + + FLWGG + R+IAWV+W+ +C PK GGLG+KD FNT +
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 302 LGKCCWRYLCDTNSLWCQVIKAKY-------DQPGRIIESPWWRDVQAARVDMGGINWFE 354
LGK W W +V+++KY + +S WW+D+ + I
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKR 364
Query: 355 AGLAKVVGNGDSTQFWLEDWS 375
+ K VG GD +FW + W+
Sbjct: 365 ETIWK-VGGGDRIKFWEDLWT 424
>CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigrum
granulovirus}, partial (5%)
Length = 701
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/156 (30%), Positives = 88/156 (55%), Gaps = 3/156 (1%)
Frame = -1
Query: 457 YTVNNAYLFMQGDE--GEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVID 514
++ N+AY ++ D+ +P++ ++LW +P +FAW+L+ +R+P ++ L RR ++
Sbjct: 701 FSTNSAYNCIRPDQLFYQPNSGFRQLWEIKIPPTALSFAWRLLWDRLPSKENLIRRQIV- 525
Query: 515 AQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHG 574
Q+D+ C C +VE+++HL +C KV+ LW NT + P+ H G
Sbjct: 524 LQNDL-CPFCQSQVESASHLFFTCHKVMPLWWEFNTWVREDRVLHSKPMDNFLQHCSLAG 348
Query: 575 -RNATQRHGEYAVWLALTWSVWLLRNEILFGTAVYD 609
RN+ +R + W+A T S+W LRN+++F +D
Sbjct: 347 SRNSNRRRKIW--WIAATRSIWNLRNDMIFNNQPFD 246
>CO984521
Length = 716
Score = 89.4 bits (220), Expect = 4e-18
Identities = 54/170 (31%), Positives = 79/170 (45%), Gaps = 4/170 (2%)
Frame = -2
Query: 444 SDVWRWPPNSEGFYTVNNAYLFMQ----GDEGEPDAALKRLWAAPVPSNVKAFAWKLMLN 499
SD W+W G Y+ +AY + G+E D K LW VP V FAW+L+ +
Sbjct: 649 SDQWKWAAEPSGCYSTKSAYKALHHVTVGEE--QDGKFKELWKLRVPLKVAIFAWRLIQD 476
Query: 500 RIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPS 559
++P + L+++ V + C LC ET++HL CSKV LW + +N +
Sbjct: 475 KLPTKANLRKKRV--ELQEYLCPLCRSVEETASHLFFHCSKVSPLWWESQSWVNMMGVFP 302
Query: 560 LGPISEHFLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILFGTAVYD 609
P +HF Q W ALT+S+W RN I+F A +D
Sbjct: 301 YQP-DQHFSQHIFGASVGLQGKRWQWWWFALTYSIWKHRNSIIFSNANFD 155
>TC222789
Length = 954
Score = 86.7 bits (213), Expect = 3e-17
Identities = 54/157 (34%), Positives = 77/157 (48%), Gaps = 2/157 (1%)
Frame = +2
Query: 455 GFYT-VNNAYLFM-QGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGV 512
GF T VN AYL G EG D A ++LW VP + FAW+L+ +R+P + L RR +
Sbjct: 281 GFCTRVNYAYLMRGAGVEGIKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQI 460
Query: 513 IDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPH 572
D SC C E + HL CSK++ +W + +N A P +HFL
Sbjct: 461 --QVMDRSCPFCRNVEEDAGHLFFHCSKIIPIWWESLSWVNISGALPKDP-RQHFLQHDL 631
Query: 573 HGRNATQRHGEYAVWLALTWSVWLLRNEILFGTAVYD 609
+ WLA+TW++W RN+I+F +D
Sbjct: 632 IMAGGIRTTRWKCWWLAVTWTIWQQRNKIIFFNDSFD 742
>TC222857
Length = 657
Score = 85.9 bits (211), Expect = 5e-17
Identities = 43/132 (32%), Positives = 68/132 (50%)
Frame = -3
Query: 478 KRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLS 537
K LW +PS FAW+L+ +R+P + L+ R V SD++C C ET++H+ +
Sbjct: 619 KDLWKIKIPSKFLMFAWRLLWDRLPTKANLRARQV--QISDLTCPFCRRVEETASHMFIH 446
Query: 538 CSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEYAVWLALTWSVWLL 597
C K +W +N + P I++HF+ F + W+A+TWS+W L
Sbjct: 445 CIKTQPIWWETMNWIN-MQGPLPWSITDHFMQFSSLKEAGIRSRRWQWWWMAVTWSIWQL 269
Query: 598 RNEILFGTAVYD 609
RN I+F A +D
Sbjct: 268 RNSIVFSNATFD 233
>BM891241
Length = 407
Score = 70.1 bits (170), Expect(2) = 6e-16
Identities = 29/62 (46%), Positives = 38/62 (60%)
Frame = -2
Query: 264 GGSPEERRIAWVSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKA 323
GG + ++I WV WE +C PK GGLG+KD FN A+LGK W D LW ++I +
Sbjct: 406 GGDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227
Query: 324 KY 325
KY
Sbjct: 226 KY 221
Score = 32.3 bits (72), Expect(2) = 6e-16
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 334 SPWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKG-KLDGRYHRLY 388
S WWRD++ + F ++ VG GD FW + W G+ L+ +Y++L+
Sbjct: 174 SYWWRDLRKF-YHQSDHSIFHQYMSWKVGCGDKINFWTDKWLGEDYTLEQKYNQLF 10
>BM891637
Length = 427
Score = 80.5 bits (197), Expect = 2e-15
Identities = 51/148 (34%), Positives = 73/148 (48%), Gaps = 14/148 (9%)
Frame = -1
Query: 268 EERRIAWVSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKY-- 325
E ++IAW+SW + C D GGLG+KD N A+L K W + LW +++ +KY
Sbjct: 424 EGKKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKG 245
Query: 326 ----DQ-PGRIIESPWWRDVQAARVDMGGINWFEAGLAK------VVGNGDSTQFWLEDW 374
DQ P + SPWW D++A IN ++ +A VG GD FW + W
Sbjct: 244 WRGLDQGPQKYYFSPWWADLRA-------INQHQSMIAASNQFCWKVGRGDQILFWEDSW 86
Query: 375 SGKG-KLDGRYHRLYNLSRQKYSRIVDM 401
G L ++ LY LS Q+ + DM
Sbjct: 85 VDDGTPLKDQFPELYRLSSQRNFIMADM 2
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 80.1 bits (196), Expect = 3e-15
Identities = 44/131 (33%), Positives = 65/131 (49%)
Frame = +2
Query: 479 RLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSC 538
+L + VP+ + F W+L+ +R+P R +LQRR V A D+SC C + E + HL C
Sbjct: 53 KL*SIKVPNKIAIFVWRLIRDRLPTRHKLQRRQVQVA--DMSCPFCRVKEENAGHLFFHC 226
Query: 539 SKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEYAVWLALTWSVWLLR 598
+K+ LW + +N A L P H + W+ALTWS+W R
Sbjct: 227 TKIQPLWWEAMSWINLKGAAPLTPKMNFNQHMGLQADGVRSNRWQ-CWWMALTWSIWKTR 403
Query: 599 NEILFGTAVYD 609
N I+F A +D
Sbjct: 404 NSIVFSNASFD 436
>CA851073
Length = 633
Score = 79.7 bits (195), Expect = 3e-15
Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Frame = +1
Query: 445 DVWRWPPNSEGFYTVNNAYLFMQGDEGEPDAA--LKRLWAAPVPSNVKAFAWKLMLNRIP 502
D W + G Y+ +AY + A K +W +P F+W+L+ +R+P
Sbjct: 28 DTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSWRLIKDRLP 207
Query: 503 CRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAP-SLG 561
R L RR V +++ C LC E E + HL +C GLW + R N I P S+
Sbjct: 208 TRHNLLRRNVSIQENE--CPLCGYEQEEADHLFFNCKMTRGLWWE-SMRWNQIVGPLSVS 378
Query: 562 PISEHFLHFPH---HGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
P S HF+ F GRN T+ G W+ALT S+W RN ++F
Sbjct: 379 PAS-HFVQFCDGFGAGRNHTRWCG---WWIALTSSIWKHRNLLIF 501
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.336 0.146 0.539
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,795,944
Number of Sequences: 63676
Number of extensions: 732955
Number of successful extensions: 6896
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 6545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6791
length of query: 611
length of database: 12,639,632
effective HSP length: 103
effective length of query: 508
effective length of database: 6,081,004
effective search space: 3089150032
effective search space used: 3089150032
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0067a.8