BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.6
(713 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CK606526 40 0.004
CK606020 37 0.040
BF010312 35 0.15
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 34 0.20
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 34 0.26
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 34 0.26
BI893356 33 0.34
AW597075 similar to PIR|T47436|T474 protein kinase-like protein ... 33 0.34
BI424681 homologue to GP|17016848|gb| wsv453 {shrimp white spot ... 33 0.44
TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial... 33 0.44
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 33 0.57
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 33 0.57
TC226211 UP|Q39862 (Q39862) Homeobox-leucine zipper protein, com... 32 0.75
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 32 0.75
TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 32 0.75
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 32 0.98
TC204250 similar to UP|O96030 (O96030) Neurotrophic factor artem... 32 0.98
CD403462 32 0.98
BG839096 30 2.8
>CK606526
Length = 513
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/67 (32%), Positives = 27/67 (39%)
Frame = +3
Query: 406 RPLHQSTQSTLDPKDRPAEKKKGHDNVPPTQPDSSALINRPPTPFTQAGPSSAIGGETPP 465
+P + + TL PK P KK G P P PPTP + P + GG PP
Sbjct: 15 KPWN*KKEKTLPPKQTPGGKKGGAPPEPRAPPQGEKTFGSPPTPNKKPPPENRGGGAPPP 194
Query: 466 LLSLSDP 472
S P
Sbjct: 195 KKIPSPP 215
>CK606020
Length = 340
Score = 36.6 bits (83), Expect = 0.040
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +1
Query: 650 IKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNN 709
+ D V DD++ L + +E E EEE+ E+ E+ ++E++E+E + +V
Sbjct: 148 LPDSPVANDDEIDPSLDEEEEEEEEEEEEEEEEEEEEIEEEEEEEEEEVEEEVEEEEVEG 327
Query: 710 DNV 712
+ V
Sbjct: 328 EEV 336
>BF010312
Length = 415
Score = 34.7 bits (78), Expect = 0.15
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 236 KVWQKKYFKV-MESPEMNNLFRDSDNNPLFPFYWTKNPR 273
++++ Y+KV + N F D NPLFPFYW + PR
Sbjct: 167 RIFKTGYYKVTIRLVVGKNFFYDLAGNPLFPFYWKQCPR 283
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 34.3 bits (77), Expect = 0.20
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 658 DDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQ 698
DDD D +D+ + +E+DG++ ++ +DED+++E PQ
Sbjct: 428 DDDEDDD-----DDDDDNDEDDGDEDDDDEEDEDEDEETPQ 535
Score = 30.4 bits (67), Expect = 2.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 658 DDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQ 698
DDD + + +D+ E +++D +D +E + DED + E +
Sbjct: 389 DDDPEANGGGESDDDDEDDDDDDDDNDEDDGDEDDDDEEDE 511
Score = 28.9 bits (63), Expect = 8.3
Identities = 19/64 (29%), Positives = 31/64 (47%)
Frame = +2
Query: 648 KDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDV 707
KD D + DDD D +D+ + E+ G+D E+ D D + E G S +D
Sbjct: 263 KDASDTEDDDDDDDVNDGEDGDDDDEDDEDFSGDDGGEE-ADSDDDPEANGGGESDDDDE 439
Query: 708 NNDN 711
++D+
Sbjct: 440 DDDD 451
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 33.9 bits (76), Expect = 0.26
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = -3
Query: 674 EPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNND 710
E E+EDG+D+++ ++D+D + E + G + D D
Sbjct: 448 EDEDEDGDDQDDDDEDDDDDDEEDEAGEEEDEDGAED 338
Score = 30.8 bits (68), Expect = 2.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 651 KDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEK 694
+DG DDD D + ++ E E+EDG + E +DE+ E+
Sbjct: 436 EDGDDQDDDDEDDDDDDEEDEAGEEEDEDGAEDEENEEDEEDEE 305
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 33.9 bits (76), Expect = 0.26
Identities = 20/77 (25%), Positives = 36/77 (45%)
Frame = +1
Query: 627 AAKEQIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQ 686
A+ +Q+++ EP D +D D+ D +DES+ +E+D E+ + +
Sbjct: 130 ASAKQVKIVEPKKDNEEDSDDDSDEDDDFGSSDEEMEDADSDSDDESDDKEDDDEETHPK 309
Query: 687 NKDEDQEKENPQVGTSQ 703
NK D K+ P S+
Sbjct: 310 NKKADLGKKRPNESASK 360
>BI893356
Length = 434
Score = 33.5 bits (75), Expect = 0.34
Identities = 26/78 (33%), Positives = 33/78 (41%), Gaps = 10/78 (12%)
Frame = +3
Query: 18 LTSPSTEGKVSAPTVI-----EIHSSPSTHEDSGPAGSVDSILSSNG-----DLSSPEWR 67
LTS + K + P I HS ED GP GS S SS+ D P+ R
Sbjct: 21 LTSDMSAFKAANPGAIFEDFIRWHSPGDWEEDDGPEGSKSSSSSSHDIKKSKDSWPPQGR 200
Query: 68 SNAHLVEDKCLWRSIWCS 85
+ + E LWR +W S
Sbjct: 201LSKRMSEHGNLWRKLWNS 254
>AW597075 similar to PIR|T47436|T474 protein kinase-like protein -
Arabidopsis thaliana, partial (8%)
Length = 380
Score = 33.5 bits (75), Expect = 0.34
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 433 PPTQPDSSALINRPPTPFTQAGPSSAIGGETPPLLSLSDP 472
PPT P +++ PPTP AGP S TPP + S P
Sbjct: 212 PPTSPPTASPTRPPPTP---AGPPSTGSDRTPPAAASSPP 322
>BI424681 homologue to GP|17016848|gb| wsv453 {shrimp white spot syndrome
virus} [Shrimp white spot syndrome virus], partial (11%)
Length = 460
Score = 33.1 bits (74), Expect = 0.44
Identities = 17/49 (34%), Positives = 27/49 (54%)
Frame = +3
Query: 657 GDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGN 705
GDDDVS +E EE+ E R+EQ +++ +EKE + + G+
Sbjct: 252 GDDDVSKKQRVDEENEKSVEEQRLEKRDEQEEEKGEEKEEEEEKEASGS 398
>TC228249 similar to UP|Q9M9V0 (Q9M9V0) F6A14.10 protein, partial (82%)
Length = 1066
Score = 33.1 bits (74), Expect = 0.44
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 659 DDVSLDLLPQFNDESEPEEEDGE---DRNEQNKDEDQEKENPQVGTSQGN 705
DD+ + L FN+E + E+ D E + N+++ ED ++E G+ GN
Sbjct: 699 DDLWPNPLTYFNNELDEEDVDSEADDEENDEDDSEDDDQEENDAGSEDGN 848
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 32.7 bits (73), Expect = 0.57
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 658 DDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNNDN 711
D+D D D+++ EE+D D + + DED E+E + +D +ND+
Sbjct: 338 DEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDDNDS 499
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 649 DIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDED 691
D++ G DDD D +D + E+ED ED EQ ++ED
Sbjct: 455 DVQRGGEPDDDDNDSD-----DDSDDDEDEDEEDEEEQGEEED 568
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 32.7 bits (73), Expect = 0.57
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 671 DESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGN 705
+E E EEE+ E+ E+ ++E++E+E + +GN
Sbjct: 34 EEKEEEEEEEEEEEEEEEEEEEEEEKEEEEEEEGN 138
>TC226211 UP|Q39862 (Q39862) Homeobox-leucine zipper protein, complete
Length = 1249
Score = 32.3 bits (72), Expect = 0.75
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 433 PPTQPDSSALINRPPTPFTQAGPSSAIGGETPPLLSLSDP 472
PP+ S+ R PF A G TPPL+SL DP
Sbjct: 699 PPSDSRSTFSKTRSQPPFASASSLPFCSGTTPPLVSLEDP 580
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 32.3 bits (72), Expect = 0.75
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 671 DESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNNDN 711
DE + +E+D D + + DED+E+E+ + +D +ND+
Sbjct: 232 DEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDD 354
Score = 29.6 bits (65), Expect = 4.8
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 4/57 (7%)
Frame = +1
Query: 649 DIKDGQVIGDDDVSLDLLP----QFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGT 701
D DG GDDD D Q E + ++ D +D +E +DE+++ E +GT
Sbjct: 256 DAPDG---GDDDDDEDEEEESDVQRGGEPDDDDNDDDDEDEDEEDEEEQGEEADLGT 417
>TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (14%)
Length = 1433
Score = 32.3 bits (72), Expect = 0.75
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 355 PIKMKEYLAQSAAMVKKRAAEAEQKKKNEGT-SGSDNVRDPKRQKTSSATGGRPLHQSTQ 413
P+K ++ L ++AA K+R +A + KK G+ S SDN D + +KTS + + S
Sbjct: 263 PLKWEQKL-EAAAETKERKLKATKHKKRSGSDSDSDNDSDDESRKTSKRSHRKHRKHSHY 439
Query: 414 STLDPKDRPAEKKK 427
+ D + R + K
Sbjct: 440 DSGDHEKRKEKSSK 481
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 32.0 bits (71), Expect = 0.98
Identities = 13/42 (30%), Positives = 26/42 (60%)
Frame = +3
Query: 657 GDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQ 698
GDDD ++ + +E+DG++ +E D+D+++E+PQ
Sbjct: 438 GDDD----------EDDDNDEDDGDEDDEDEGDDDEDEESPQ 533
Score = 28.9 bits (63), Expect = 8.3
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Frame = +3
Query: 649 DIKDGQVIGDD---DVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGN 705
D +D GDD + D P+ N +++DG+D + + DED E+ + +G+
Sbjct: 336 DEEDEDFSGDDGGEEADSDDDPEANGGGGSDDDDGDDDEDDDNDEDDGDEDDE---DEGD 506
Query: 706 D 706
D
Sbjct: 507 D 509
>TC204250 similar to UP|O96030 (O96030) Neurotrophic factor artemin
(Pre-pro-neublastin) (Pre-pro-enovin precursor), partial
(8%)
Length = 891
Score = 32.0 bits (71), Expect = 0.98
Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
Frame = +3
Query: 414 STLDPKDRPAEKKKGHDNVPPTQPDSSALINRPPT-PFTQAGPSSAIGGETPP 465
STL + PA K PP P SA PPT T + PS + G +PP
Sbjct: 102 STLPAAEWPAPKPSSPSPPPPAPPSPSAATTSPPTRAST*SRPSPSNRGTSPP 260
>CD403462
Length = 423
Score = 32.0 bits (71), Expect = 0.98
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -3
Query: 670 NDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNNDNV 712
N ++E +EDG NE DED EN + +D N++N+
Sbjct: 406 NSDNEDCDEDGNSENEDCDDEDGNNENED--CDENDDKNDENI 284
>BG839096
Length = 754
Score = 30.4 bits (67), Expect = 2.8
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Frame = +1
Query: 360 EYLAQSAAMVKKRAAEAEQKKKNEGTSGSDNVRDPKRQKTSSATGGRPLHQSTQSTLDPK 419
E L+Q +K+ + +KKK S SDN ++P+ ++++S H+ +++D
Sbjct: 16 EVLSQLTRKTRKKMEKELKKKKKRHDSESDNEKEPQIRRSAS-------HKRDMNSMD-S 171
Query: 420 DRPAEK-----KKGHDNVPPTQPDSSALINRPPTPFTQAGPSSAIGGETPPLLSLSDPHF 474
D EK K+G+ ++ ++++ R + A S+ G E P L DPH
Sbjct: 172 DSNEEKLSSFIKQGNRSMKNKMFXNTSISAR--SKIQNATHQSSDGIEKP--LFGCDPHI 339
Query: 475 NG 476
+G
Sbjct: 340 HG 345
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,888,449
Number of Sequences: 63676
Number of extensions: 533598
Number of successful extensions: 3362
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 3083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3283
length of query: 713
length of database: 12,639,632
effective HSP length: 104
effective length of query: 609
effective length of database: 6,017,328
effective search space: 3664552752
effective search space used: 3664552752
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0067a.6