BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0066.6
(137 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214036 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing ... 263 2e-71
TC214416 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing ... 166 5e-65
TC214122 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing ... 240 2e-64
TC204821 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing ... 240 2e-64
TC214283 similar to UP|ADF1_PETHY (Q9FVI2) Actin-depolymerizing ... 210 2e-55
BF597307 similar to SP|Q9FVI1|ADF2 Actin-depolymerizing factor 2... 194 1e-50
BE555117 similar to SP|Q9FVI1|ADF2_ Actin-depolymerizing factor ... 180 2e-46
AW233906 weakly similar to SP|Q39250|ADF1 Actin-depolymerizing f... 175 7e-45
TC215829 similar to UP|ADF_VITVI (Q8SAG3) Actin-depolymerizing f... 174 1e-44
TC215242 homologue to UP|Q9XEN2 (Q9XEN2) Actin depolymerizing fa... 169 5e-43
TC215243 homologue to UP|Q9XEN2 (Q9XEN2) Actin depolymerizing fa... 168 6e-43
TC226535 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing ... 166 4e-42
TC226534 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing ... 164 2e-41
TC208535 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing ... 164 2e-41
BM139543 135 8e-33
AW423860 similar to GP|4566614|gb| actin depolymerizing factor {... 134 1e-32
BM521702 similar to PIR|B84543|B84 actin depolymerizing factor 5... 88 1e-31
AW706683 similar to GP|4566614|gb| actin depolymerizing factor {... 130 2e-31
TC214425 homologue to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizin... 115 8e-27
TC214326 homologue to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizin... 106 4e-24
>TC214036 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (97%)
Length = 1011
Score = 263 bits (672), Expect = 2e-71
Identities = 130/139 (93%), Positives = 136/139 (97%), Gaps = 2/139 (1%)
Frame = +3
Query: 1 MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIED--KQVIVEKLGEPGQGYEDFTANL 58
MANAASGMAVHDDCKLRF+ELKTKRT+RFIV+KIE+ KQVIVEKLGEP QGYEDFTA+L
Sbjct: 132 MANAASGMAVHDDCKLRFLELKTKRTHRFIVFKIEEQQKQVIVEKLGEPAQGYEDFTASL 311
Query: 59 PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 118
PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQ+E
Sbjct: 312 PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 491
Query: 119 LQATDPTEMGLDVFKSRAN 137
LQATDPTEMGLDVFKSRAN
Sbjct: 492 LQATDPTEMGLDVFKSRAN 548
>TC214416 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (96%)
Length = 825
Score = 166 bits (419), Expect(2) = 5e-65
Identities = 80/89 (89%), Positives = 85/89 (94%), Gaps = 2/89 (2%)
Frame = +2
Query: 2 ANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIED--KQVIVEKLGEPGQGYEDFTANLP 59
ANAASGMAVHDDCKLRF+ELK KRT+RFIV+KIE+ KQVIVEKLGEP QGYEDFTA+LP
Sbjct: 182 ANAASGMAVHDDCKLRFLELKAKRTHRFIVFKIEEQQKQVIVEKLGEPAQGYEDFTASLP 361
Query: 60 ADECRYAVYDFEYLTEGNVPKSRIFFIAW 88
ADECRYAVYDFEYLTEGNVPKSRIFFIAW
Sbjct: 362 ADECRYAVYDFEYLTEGNVPKSRIFFIAW 448
Score = 98.2 bits (243), Expect(2) = 5e-65
Identities = 48/49 (97%), Positives = 49/49 (99%)
Frame = +1
Query: 89 SPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN 137
SPDTSRVRSKMIYASSKDRFKRELDGIQ+ELQATDPTEMGLDVFKSRAN
Sbjct: 535 SPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRAN 681
>TC214122 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (97%)
Length = 792
Score = 240 bits (612), Expect = 2e-64
Identities = 117/139 (84%), Positives = 130/139 (93%), Gaps = 2/139 (1%)
Frame = +1
Query: 1 MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANL 58
MANAASGMAVHD+CKL+F+ELK KRTYR+IV+KIE+K QVIVEKLG+P GY++F A+L
Sbjct: 115 MANAASGMAVHDECKLKFLELKAKRTYRYIVFKIEEKSKQVIVEKLGDPANGYDEFAASL 294
Query: 59 PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 118
PADECRYAVYDF+++TE N KSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE
Sbjct: 295 PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 474
Query: 119 LQATDPTEMGLDVFKSRAN 137
LQATDPTEMGLDVFKSRAN
Sbjct: 475 LQATDPTEMGLDVFKSRAN 531
>TC204821 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (97%)
Length = 780
Score = 240 bits (612), Expect = 2e-64
Identities = 117/139 (84%), Positives = 130/139 (93%), Gaps = 2/139 (1%)
Frame = +3
Query: 1 MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANL 58
MANAASGMAVHD+CKL+F+ELK KRTYR+IV+KIE+K QVIVEKLG+P GY++F A+L
Sbjct: 45 MANAASGMAVHDECKLKFLELKAKRTYRYIVFKIEEKSKQVIVEKLGDPANGYDEFAASL 224
Query: 59 PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 118
PADECRYAVYDF+++TE N KSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE
Sbjct: 225 PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 404
Query: 119 LQATDPTEMGLDVFKSRAN 137
LQATDPTEMGLDVFKSRAN
Sbjct: 405 LQATDPTEMGLDVFKSRAN 461
>TC214283 similar to UP|ADF1_PETHY (Q9FVI2) Actin-depolymerizing factor 1
(ADF 1), partial (87%)
Length = 884
Score = 210 bits (534), Expect = 2e-55
Identities = 103/121 (85%), Positives = 112/121 (92%), Gaps = 2/121 (1%)
Frame = +3
Query: 1 MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQ--VIVEKLGEPGQGYEDFTANL 58
MANAASGMAVHDDCKL+F+ELK KRTYRFIV+KIE+KQ VIVEKLGEP GY+DF A+L
Sbjct: 522 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPANGYDDFAASL 701
Query: 59 PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 118
PADECRYAVYDF+++TE N KSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE
Sbjct: 702 PADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 881
Query: 119 L 119
L
Sbjct: 882 L 884
>BF597307 similar to SP|Q9FVI1|ADF2 Actin-depolymerizing factor 2 (ADF 2).
[Petunia] {Petunia hybrida}, partial (86%)
Length = 400
Score = 194 bits (493), Expect = 1e-50
Identities = 104/134 (77%), Positives = 108/134 (79%), Gaps = 2/134 (1%)
Frame = +2
Query: 6 SGMAVHDDCKLRFMELKTKRTYRFIVYKIED--KQVIVEKLGEPGQGYEDFTANLPADEC 63
SGMAVHDDCKLRF K T FI +KIE+ KQVIVEKLGEP GYE TA+LPADEC
Sbjct: 2 SGMAVHDDCKLRFWS*SKKDT-PFIAFKIEEQQKQVIVEKLGEPAHGYEYITASLPADEC 178
Query: 64 RYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATD 123
RYAVYDFEYLTE NVPK RIF IAWSPDTSRVRS MIYASS RF ELDG Q+EL ATD
Sbjct: 179 RYAVYDFEYLTERNVPKCRIFVIAWSPDTSRVRS*MIYASSPYRFYMELDGYQVELLATD 358
Query: 124 PTEMGLDVFKSRAN 137
PTEMGLDVF SRAN
Sbjct: 359 PTEMGLDVFISRAN 400
>BE555117 similar to SP|Q9FVI1|ADF2_ Actin-depolymerizing factor 2 (ADF 2).
[Petunia] {Petunia hybrida}, partial (48%)
Length = 412
Score = 180 bits (456), Expect = 2e-46
Identities = 96/136 (70%), Positives = 105/136 (76%), Gaps = 2/136 (1%)
Frame = +2
Query: 2 ANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIED--KQVIVEKLGEPGQGYEDFTANLP 59
ANAASGMA HDDCKLRF+EL TKRT RFI IE+ KQVIVEKLGE GYED T +
Sbjct: 2 ANAASGMAGHDDCKLRFLELNTKRTLRFIFV*IEEQQKQVIVEKLGESAHGYEDLTVSRS 181
Query: 60 ADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIEL 119
ADECRYA YD EYLTEGNVPKS +F IAWS D+SRVRS MIYAS + ELD IQ EL
Sbjct: 182 ADECRYAAYDVEYLTEGNVPKS*MFIIAWSSDSSRVRSNMIYASYIEICI*ELDRIQEEL 361
Query: 120 QATDPTEMGLDVFKSR 135
+ATDPTE G+DVF +R
Sbjct: 362 RATDPTETGIDVFNNR 409
>AW233906 weakly similar to SP|Q39250|ADF1 Actin-depolymerizing factor 1
(ADF-1) (AtADF1). [Mouse-ear cress] {Arabidopsis
thaliana}, partial (94%)
Length = 415
Score = 175 bits (443), Expect = 7e-45
Identities = 86/138 (62%), Positives = 114/138 (82%), Gaps = 2/138 (1%)
Frame = +2
Query: 2 ANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLP 59
ANAASGMAVHD+CKL+F+ELK KRTYR+IV+KIE+K QVIVEKLG+P GY++F A+LP
Sbjct: 2 ANAASGMAVHDECKLKFLELKAKRTYRYIVFKIEEKSKQVIVEKLGDPANGYDEFAASLP 181
Query: 60 ADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIEL 119
ADEC YA+Y+ +T+ N K+ I FI S +TS+V++KMIYASSKDR K++ D +QI+L
Sbjct: 182 ADECXYAIYNCNGITKENDQKNXIVFIT*SANTSKVKNKMIYASSKDRCKKKADRMQIDL 361
Query: 120 QATDPTEMGLDVFKSRAN 137
QAT+ T++ L+VF+ RAN
Sbjct: 362 QATNATKINLNVFEKRAN 415
>TC215829 similar to UP|ADF_VITVI (Q8SAG3) Actin-depolymerizing factor (ADF),
partial (96%)
Length = 872
Score = 174 bits (441), Expect = 1e-44
Identities = 77/137 (56%), Positives = 110/137 (80%), Gaps = 2/137 (1%)
Frame = +2
Query: 3 NAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLPA 60
NA SGM V D K FMELK K+ +R++++K+++K +V+VEK G P + Y+DF A+LP
Sbjct: 92 NATSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPE 271
Query: 61 DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ 120
++CRYAV+D++++T N KS+IFFIAWSP TSR+R+KM+YA++KDRF+RELDG+ E+Q
Sbjct: 272 NDCRYAVFDYDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKDRFRRELDGVHYEIQ 451
Query: 121 ATDPTEMGLDVFKSRAN 137
ATDPTEM L+V + RA+
Sbjct: 452 ATDPTEMDLEVLRDRAH 502
>TC215242 homologue to UP|Q9XEN2 (Q9XEN2) Actin depolymerizing factor
(Fragment), complete
Length = 876
Score = 169 bits (427), Expect = 5e-43
Identities = 77/137 (56%), Positives = 108/137 (78%), Gaps = 2/137 (1%)
Frame = +3
Query: 3 NAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLPA 60
NA+SGM V + F+EL+ K+ +R++++KI++K +VIVEK G P + Y+DFTA+LP
Sbjct: 120 NASSGMGVAEHSVNTFLELQRKKVHRYVIFKIDEKKKEVIVEKTGGPAESYDDFTASLPE 299
Query: 61 DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ 120
++CRYAV+DF+++T N KS+IFFIAWSP +R+R KM+YA+SKDRF+REL GI E+Q
Sbjct: 300 NDCRYAVFDFDFVTSENCQKSKIFFIAWSPSVARIRPKMLYATSKDRFRRELQGIHYEIQ 479
Query: 121 ATDPTEMGLDVFKSRAN 137
ATDPTEM L+V + RAN
Sbjct: 480 ATDPTEMDLEVLRERAN 530
>TC215243 homologue to UP|Q9XEN2 (Q9XEN2) Actin depolymerizing factor
(Fragment), complete
Length = 1053
Score = 168 bits (426), Expect = 6e-43
Identities = 75/137 (54%), Positives = 108/137 (78%), Gaps = 2/137 (1%)
Frame = +3
Query: 3 NAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLPA 60
NA+SGM V + F+EL+ K+ +R++++KI++K +V+VEK G P + Y+DFTA+LP
Sbjct: 132 NASSGMGVAEHSVSTFLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPE 311
Query: 61 DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ 120
++CRYA++DF+++T N KS+IFFIAWSP +R+R KM+YA+SKDRF+REL GI E+Q
Sbjct: 312 NDCRYAIFDFDFVTSENCQKSKIFFIAWSPSVARIRPKMLYATSKDRFRRELQGIHYEIQ 491
Query: 121 ATDPTEMGLDVFKSRAN 137
ATDPTEM L+V + RAN
Sbjct: 492 ATDPTEMDLEVLRERAN 542
>TC226535 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing factor 5
(ADF-5) (AtADF5), complete
Length = 742
Score = 166 bits (419), Expect = 4e-42
Identities = 78/135 (57%), Positives = 104/135 (76%), Gaps = 2/135 (1%)
Frame = +1
Query: 4 AASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQ--VIVEKLGEPGQGYEDFTANLPAD 61
A +GM V D+CK FME+K K+ +R+IV+KI++K V V+K+G PG+ Y D A+LP D
Sbjct: 70 ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRLVTVDKVGGPGESYGDLAASLPDD 249
Query: 62 ECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQA 121
+CRYAV+DF+++T N KS+IFFIAWSP SR+R+KM+YA+SKD +R LDGI E+QA
Sbjct: 250 DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKMLYATSKDGLRRALDGISYEVQA 429
Query: 122 TDPTEMGLDVFKSRA 136
TDPTEMG DV + RA
Sbjct: 430 TDPTEMGFDVIQDRA 474
>TC226534 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing factor 5
(ADF-5) (AtADF5), complete
Length = 958
Score = 164 bits (414), Expect = 2e-41
Identities = 77/135 (57%), Positives = 103/135 (76%), Gaps = 2/135 (1%)
Frame = +1
Query: 4 AASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQ--VIVEKLGEPGQGYEDFTANLPAD 61
A +GM V D+CK FME+K K+ +R+IV+KI++K V V+K+G PG+ Y D A+LP D
Sbjct: 52 ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRLVTVDKVGGPGESYGDLAASLPDD 231
Query: 62 ECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQA 121
+CRYAV+DF+++T N KS+IFFIAWSP SR+R+KM+YA+SKD +R LDGI E+QA
Sbjct: 232 DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKMLYATSKDGLRRALDGISYEVQA 411
Query: 122 TDPTEMGLDVFKSRA 136
TDP EMG DV + RA
Sbjct: 412 TDPAEMGFDVIQDRA 456
>TC208535 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing factor 5
(ADF-5) (AtADF5), complete
Length = 799
Score = 164 bits (414), Expect = 2e-41
Identities = 77/135 (57%), Positives = 105/135 (77%), Gaps = 2/135 (1%)
Frame = +3
Query: 4 AASGMAVHDDCKLRFMELKTKRTYRFIVYKIED--KQVIVEKLGEPGQGYEDFTANLPAD 61
A +GM V D+CK FM++K K+ +R+IV+KI++ + V V+KLG P +GY+D TA+LP D
Sbjct: 54 ATTGMWVTDECKNSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPTD 233
Query: 62 ECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQA 121
+CRYAV+DF+++T N KS+IFFIAWSP SR+R+K++YA+SKD +R LDGI ELQA
Sbjct: 234 DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQA 413
Query: 122 TDPTEMGLDVFKSRA 136
TDPTEMG DV + A
Sbjct: 414 TDPTEMGFDVIRDIA 458
>BM139543
Length = 509
Score = 135 bits (339), Expect = 8e-33
Identities = 79/124 (63%), Positives = 92/124 (73%), Gaps = 4/124 (3%)
Frame = +3
Query: 1 MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIED--KQVIVEKLGEPGQGYEDFTANL 58
MANAASGMAVHDDCKLRF+ LKTKRT+RFIV+KIE+ KQVIVEKLGEP QGYEDFTA+L
Sbjct: 90 MANAASGMAVHDDCKLRFLGLKTKRTHRFIVFKIEEQQKQVIVEKLGEPAQGYEDFTASL 269
Query: 59 PADECRYAVYDFEYL-TEGNVPKSRIFFIAWSPDTSRVR-SKMIYASSKDRFKRELDGIQ 116
PA+E F +G K+ F IAWSPDTSRV ++ YASSKDRF+ +G
Sbjct: 270 PANELPLCCL*F*VS*LKGMSLKAEFFSIAWSPDTSRVEGAR*SYASSKDRFQ---EGSW 440
Query: 117 IELQ 120
+E Q
Sbjct: 441 MEFQ 452
Score = 45.8 bits (107), Expect = 6e-06
Identities = 32/59 (54%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +2
Query: 73 LTEGNVPKSRIFFIAWSP-DTSRVRSKMIYASSKDRFK-RELDGIQI-ELQATDPTEMG 128
LTEGNVPKSRIFF P RSKMI + + RELDGI I Q +PTEMG
Sbjct: 314 LTEGNVPKSRIFFHCMVP*HIKG*RSKMILCQLQRQIPGRELDGIPI*SCQPLNPTEMG 490
>AW423860 similar to GP|4566614|gb| actin depolymerizing factor {Populus x
canescens}, partial (93%)
Length = 397
Score = 134 bits (337), Expect = 1e-32
Identities = 63/129 (48%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Frame = +2
Query: 4 AASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLPAD 61
A+SGM V + F+EL+ K+ +R++++KI++K +V VEK G P + Y+DFTA+LP +
Sbjct: 2 ASSGMGVAEHSVSTFLELQRKKVHRYVIFKIDEKKKEVGVEKTGCPAESYDDFTASLPEN 181
Query: 62 ECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQA 121
+CRYA++ F+++T GN KS+I IAWS +R+R KM+YA+ KD +REL GI E+Q
Sbjct: 182 DCRYAIFYFDFVTSGNCQKSQIRCIAWSTSGARIRPKMLYATFKDACRRELQGIHYEIQG 361
Query: 122 TDPTEMGLD 130
TDPTEM L+
Sbjct: 362 TDPTEMDLE 388
>BM521702 similar to PIR|B84543|B84 actin depolymerizing factor 5
[imported] - Arabidopsis thaliana, partial (90%)
Length = 428
Score = 88.2 bits (217), Expect(2) = 1e-31
Identities = 41/79 (51%), Positives = 59/79 (73%), Gaps = 2/79 (2%)
Frame = +2
Query: 18 FMELKTKRTYRFIVYKIEDKQ--VIVEKLGEPGQGYEDFTANLPADECRYAVYDFEYLTE 75
FME+K K+ +R+IV+KI++K V V+K+G PG+ Y D A+LP D+CRYAV+DF+++T
Sbjct: 8 FMEMKWKKVHRYIVFKIDEKSRLVTVDKVGGPGESYGDLAASLPDDDCRYAVFDFDFVTV 187
Query: 76 GNVPKSRIFFIAWSPDTSR 94
N KS+IFFIA D S+
Sbjct: 188DNCRKSKIFFIACIKDKSK 244
Score = 63.9 bits (154), Expect(2) = 1e-31
Identities = 29/44 (65%), Positives = 36/44 (80%)
Frame = +3
Query: 93 SRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRA 136
SR+R+KM+YA+SKD +R LDGI E+QATDPTEMG DV + RA
Sbjct: 228 SRIRAKMLYATSKDGLRRALDGISYEVQATDPTEMGFDVIQDRA 359
>AW706683 similar to GP|4566614|gb| actin depolymerizing factor {Populus x
canescens}, partial (95%)
Length = 397
Score = 130 bits (327), Expect = 2e-31
Identities = 66/132 (50%), Positives = 90/132 (68%), Gaps = 2/132 (1%)
Frame = +2
Query: 8 MAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLPADECRY 65
M V D EL+ K+ +R + KI++K +V EK G P + Y+D TA+LP ++CRY
Sbjct: 2 MGVADHRVNALHELQRKKVHRDVRCKIDEKKKEVTREKTGGPAESYDDSTASLPENDCRY 181
Query: 66 AVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPT 125
AV D + +T N KS+IF IAWSP +R+R KM+YA+SKDRF++EL GI E+ ATDPT
Sbjct: 182 AVVDTDVVTSENCQKSKIFCIAWSPSEARIRPKMLYATSKDRFRKELHGIHYEIHATDPT 361
Query: 126 EMGLDVFKSRAN 137
EM L+V + RAN
Sbjct: 362 EMDLEVLRERAN 397
>TC214425 homologue to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (40%)
Length = 1333
Score = 115 bits (287), Expect = 8e-27
Identities = 56/58 (96%), Positives = 58/58 (99%)
Frame = -2
Query: 80 KSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN 137
KSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQ+ELQATDPTEMGLDVFKSRA+
Sbjct: 300 KSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRAH 127
>TC214326 homologue to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
(ADF 2), partial (36%)
Length = 504
Score = 106 bits (264), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (97%)
Frame = +2
Query: 85 FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN 137
FI WSPDTSRVRSKMIYASSKDRFKRELDGIQ+ELQATDPTEMGLDVFKSRAN
Sbjct: 89 FITWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRAN 247
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,367,431
Number of Sequences: 63676
Number of extensions: 44534
Number of successful extensions: 250
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of query: 137
length of database: 12,639,632
effective HSP length: 87
effective length of query: 50
effective length of database: 7,099,820
effective search space: 354991000
effective search space used: 354991000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0066.6