BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0066.1
(332 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231416 similar to UP|Q9FXF8 (Q9FXF8) F1N18.13 protein, partial... 448 e-126
BE022687 163 9e-41
TC219715 31 0.68
CF922465 29 2.6
BE190607 28 4.4
BI975030 similar to GP|20198067|gb| expressed protein {Arabidops... 28 5.8
TC218015 similar to UP|Q9FN02 (Q9FN02) Ser/thr protein phosphata... 28 7.5
CF922278 28 7.5
TC227491 similar to UP|Q38833 (Q38833) G4 protein (Chlorophyll s... 28 7.5
>TC231416 similar to UP|Q9FXF8 (Q9FXF8) F1N18.13 protein, partial (44%)
Length = 765
Score = 448 bits (1153), Expect = e-126
Identities = 223/255 (87%), Positives = 240/255 (93%)
Frame = +1
Query: 78 HEVIAQLACRLSRWDDRLFRKSIFGVADEIELKFMNRRNYEDLNLFVIILNQEIRKLSTQ 137
HEVIA LACRLSRWDDRLFRKSIFG ADEIELKFMNRRN+EDLNLF++ILNQEIRKLSTQ
Sbjct: 1 HEVIALLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNHEDLNLFILILNQEIRKLSTQ 180
Query: 138 VIRVKWSLHAREEIVFELLQHLKGIGARSLLEGIRKSTREMIEEQEAVRGRLFTIQDVTQ 197
VIRVKWSLHAR+EIVFELLQHLKG GAR+LLEGI+KSTREMIEEQEAVRGRLFTIQDV Q
Sbjct: 181 VIRVKWSLHARDEIVFELLQHLKGNGARTLLEGIKKSTREMIEEQEAVRGRLFTIQDVMQ 360
Query: 198 STVRAWLQDRSLRVTHNLAVFAGVGMVLTIITGLFGINVDGIPGAEHTPYAFGLFTAILV 257
STVRAWLQDRSLRVTHNLAVF GVG+VLTIITGLFGINVDGIPGAE TPYAFG+FTAILV
Sbjct: 361 STVRAWLQDRSLRVTHNLAVFGGVGVVLTIITGLFGINVDGIPGAEQTPYAFGVFTAILV 540
Query: 258 FIGAVLVVVGLVYLGLKKPIAEEKVEVRKLELQELVKMFQHEAETHAQVRKNVSRNNLPP 317
+G VL+ VG+VYLGLK P+ EE+VEVRKLELQELVKMFQHEAETHAQ+RKN+S NLPP
Sbjct: 541 VLGVVLIAVGMVYLGLKNPVVEEQVEVRKLELQELVKMFQHEAETHAQMRKNISPKNLPP 720
Query: 318 TAGDAFRRDVDYLLL 332
TAGDAFR D DYL++
Sbjct: 721 TAGDAFRSDADYLVI 765
>BE022687
Length = 417
Score = 163 bits (413), Expect = 9e-41
Identities = 92/137 (67%), Positives = 98/137 (71%), Gaps = 29/137 (21%)
Frame = +3
Query: 142 KWSLHAREEIVFELLQHLKGIGARSLLEGIRKSTREMIEEQEAVRGRLFTIQDVT----- 196
KWSLHAR EIVFELLQHLKG GAR+LLEGI+KSTREMIEEQEAV GRLFTIQ+
Sbjct: 6 KWSLHARNEIVFELLQHLKGNGARNLLEGIKKSTREMIEEQEAVHGRLFTIQNFHLECFA 185
Query: 197 -----------------------QSTVR-AWLQDRSLRVTHNLAVFAGVGMVLTIITGLF 232
S +R +QDRSLRVTHNLAVF GVG+VLTIITGLF
Sbjct: 186 FFFFTF***LEQLYIAHPRLT**LSCIR*ISMQDRSLRVTHNLAVFGGVGVVLTIITGLF 365
Query: 233 GINVDGIPGAEHTPYAF 249
GINVDGIPGAEHTPYAF
Sbjct: 366 GINVDGIPGAEHTPYAF 416
>TC219715
Length = 881
Score = 31.2 bits (69), Expect = 0.68
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 231 LFGINVDGIPGAEH-TPYAFGLFTAILVFIGAVLVVVGLVYLGLKKPIAEE 280
L+ N + +PG + +PY+ L + L I +V+ +YL +++P A++
Sbjct: 296 LYAFNHNILPGTSNLSPYSMTLVSGFLAVISVNVVIAFYIYLAMREPAADK 448
>CF922465
Length = 538
Score = 29.3 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 26 DDIPIVLRSWQAQNFLVTVMHIKGSVSRINVLGIAEVQELLSG 68
D P LRS+ AQ ++H K ++ +LG EV+E L G
Sbjct: 372 DLAPYALRSYSAQWNAPGILHDKHTLRSSRILGKMEVEETLQG 500
>BE190607
Length = 445
Score = 28.5 bits (62), Expect = 4.4
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +1
Query: 201 RAWLQDRSLRVTHNLAVFAGVGMVLTIITGLFGINVDGIPGA------EHTPYAFGLFTA 254
R ++DR ++T N A G++ I FG+ V G PGA +TP FG F
Sbjct: 181 RVKVRDRLHKLTDNGAA-TPAGLIFGFIGHAFGLFVGGFPGANIFGGRRNTPGNFGGFLG 357
Query: 255 ILVFI 259
++I
Sbjct: 358 GRIYI 372
>BI975030 similar to GP|20198067|gb| expressed protein {Arabidopsis
thaliana}, partial (31%)
Length = 437
Score = 28.1 bits (61), Expect = 5.8
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +3
Query: 239 IPGAEH-TPYAFGLFTAILVFIGAVLVVVGLVYLGLKKPIAEE 280
+ GA + +PY+ L + L I +V+ +YL L++P A++
Sbjct: 153 VSGASNLSPYSMTLVSGFLAVISVNVVIAFYIYLALREPTADK 281
>TC218015 similar to UP|Q9FN02 (Q9FN02) Ser/thr protein phosphatase catalytic
subunit-like protein, partial (41%)
Length = 881
Score = 27.7 bits (60), Expect = 7.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 203 WLQDRSLRVTHNLAVFAGVGMVLTIITGL 231
W++++ + VTHN +F + + IT L
Sbjct: 848 WIENQQISVTHNFTIFTDISLEYCAITEL 762
>CF922278
Length = 799
Score = 27.7 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +2
Query: 250 GLFTAILVFIGAVLVVVGLVYLGLKKP 276
G FTA++V + VL+V+G +K+P
Sbjct: 200 GCFTALVVILVVVLIVLGFTVYNVKEP 280
>TC227491 similar to UP|Q38833 (Q38833) G4 protein (Chlorophyll synthetase),
partial (79%)
Length = 1413
Score = 27.7 bits (60), Expect = 7.5
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Frame = +1
Query: 217 VFAGVGMVLTIITGLFGINVDGIPGAEHTPYAFGLFTAILVFIGAV----LVVVGLVYLG 272
+++ G+ + I+ + D G + P AFG TA + +GA+ L V G + LG
Sbjct: 658 LYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWICVGAIDITQLSVAGYL-LG 834
Query: 273 LKKP 276
KP
Sbjct: 835 ADKP 846
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.141 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,371,817
Number of Sequences: 63676
Number of extensions: 142733
Number of successful extensions: 642
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of query: 332
length of database: 12,639,632
effective HSP length: 98
effective length of query: 234
effective length of database: 6,399,384
effective search space: 1497455856
effective search space used: 1497455856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0066.1