TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0065.1
         (378 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210521 weakly similar to UP|Q9LVE6 (Q9LVE6) Similarity to sene...   252  2e-67
TC213915                                                              148  3e-36
TC209123 similar to UP|O81657 (O81657) Senescence-associated pro...   113  1e-25
BF070134                                                               49  5e-06
AW306712                                                               38  0.009
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ...    30  1.8
TC216269 similar to UP|E6_GOSHI (Q01197) Protein E6, partial (17%)     29  4.0
TC206382 homologue to UP|O65501 (O65501) NAD+ dependent isocitra...    28  6.8
TC233090 similar to UP|Q9ZVN7 (Q9ZVN7) T7A14.10 protein, partial...    28  8.9

>TC210521 weakly similar to UP|Q9LVE6 (Q9LVE6) Similarity to
           senescence-associated protein, partial (36%)
          Length = 638

 Score =  252 bits (643), Expect = 2e-67
 Identities = 131/159 (82%), Positives = 142/159 (88%)
 Frame = +2

Query: 219 SNNKTADATKKNAMNENLKRVRQLTTMTEKLSKSLLDGVGIMSGSVMAPVLKSQPGQAFL 278
           S N  +DATK NA N+NLKRVR+LT MTE+L+KSLLDGVGIMSGSVM PVLKSQPGQAFL
Sbjct: 11  SMNHRSDATKNNATNDNLKRVRKLTNMTERLTKSLLDGVGIMSGSVMTPVLKSQPGQAFL 190

Query: 279 KMLPGEVLLASLDAVNKVFEATEAAQKQSLSATSQAATRMVSNRYGEEAGEATEHVFATA 338
            MLPGEVLLASLDAVN+VFEA EAA+KQ+ SATSQAATRMVSNR+GEEAGEATEHVFATA
Sbjct: 191 NMLPGEVLLASLDAVNRVFEAAEAAEKQTFSATSQAATRMVSNRFGEEAGEATEHVFATA 370

Query: 339 GHAANTAWNVSKIRKAINPVTPASTAGGALRNSIKNRNV 377
           GHA NTAWNVSKIRKAINP + +  A GALRNS KNRNV
Sbjct: 371 GHAVNTAWNVSKIRKAINPAS-SPNAAGALRNSAKNRNV 484


>TC213915 
          Length = 434

 Score =  148 bits (374), Expect = 3e-36
 Identities = 73/114 (64%), Positives = 90/114 (78%), Gaps = 1/114 (0%)
 Frame = +2

Query: 1   MGCSGSKPEEEE-PTMMRTSTLVPIAEYSKPKNLIRQEVLIQIPGCRVYLMDEGQAVELA 59
           MGC+ SK E       M       +AE+ KPK L ++EV++QIPGC+V+LMD+G+A+ELA
Sbjct: 95  MGCNSSKAEPPPLENTMHHHHHADVAEFQKPKTL-KEEVVLQIPGCKVHLMDQGEALELA 271

Query: 60  QGQFMIIKVMDDNVSLATIIKVGNGVQWPLTKDEPVVKVDTLHYLFTLPVKDGG 113
           QG F I+K+M+ NV+LATIIKVGN VQWPLTKDEPVVKVD LHYLF+LPVKDGG
Sbjct: 272 QGHFTIMKIMEQNVALATIIKVGNSVQWPLTKDEPVVKVDALHYLFSLPVKDGG 433


>TC209123 similar to UP|O81657 (O81657) Senescence-associated protein 12,
           partial (65%)
          Length = 672

 Score =  113 bits (283), Expect = 1e-25
 Identities = 59/141 (41%), Positives = 88/141 (61%), Gaps = 3/141 (2%)
 Frame = +3

Query: 234 ENLKRVRQLTTMTEKLSKSLLDGVGIMSGSVMAPVLKSQPGQAFLKMLPGEVLLASLDAV 293
           E++KRV++LT M+EK++  +L GV  +SG   + V+ S+ G+ F  +LPGE++LA++D  
Sbjct: 84  ESIKRVKKLTKMSEKVATGVLSGVVKVSGFFTSSVVNSKAGKKFFSLLPGEIVLATMDGF 263

Query: 294 NKVFEATEAAQKQSLSATSQAATRMVSNRYGEEAGEATEHVFATAGHAANTAWNVSKIRK 353
           NKV +A E A +  +S +S   T +VS++YGEEA   T      AGHA  TAW V K+ K
Sbjct: 264 NKVLDAAEVAGRNVMSTSSVVTTGLVSHKYGEEAAHVTNEGLDAAGHAIGTAWAVFKLGK 443

Query: 354 AINP---VTPASTAGGALRNS 371
           A+NP   + P + A  A   S
Sbjct: 444 ALNPKSAIKPTTLAKAAAEAS 506


>BF070134 
          Length = 195

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 23/61 (37%), Positives = 36/61 (58%)
 Frame = +1

Query: 43  PGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSLATIIKVGNGVQWPLTKDEPVVKVDTLH 102
           PG  ++L+++  +V LA G   I  + + +  +A +  VG+ VQWPL KD   VK+D  H
Sbjct: 10  PGAILHLIEKDSSVHLASGDLTISTLGEGDKVVAVLACVGDQVQWPLAKDVSAVKLDESH 189

Query: 103 Y 103
           Y
Sbjct: 190 Y 192


>AW306712 
          Length = 247

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 151 KKGGLDWEQFAPRVEDYNHFLAKAIAGGTGQIVKGIFMCSNAYTNQVQSG 200
           ++ G  W   AP VEDY+   A+ IA  +GQ+V+GI    +   + ++ G
Sbjct: 74  ERSGAYWTTLAPNVEDYSGSFARWIAPXSGQVVRGILWAGDVTVDTLKWG 223


>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
           (Corresponding sequence ZK643.8), partial (7%)
          Length = 762

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +2

Query: 302 AAQKQSLSATSQAATRMVSNRYGEEAGEATEHVFATAGHAANTAWNVSKIRKAINPVTPA 361
           AA   + SA + AAT   +      A  AT     TA  A + + N+S I  A  P +PA
Sbjct: 143 AATTTATSAAAAAATTAAAAAATPAATTATPSTTTTAATATDISANISSISSAAVPPSPA 322

Query: 362 STA 364
             A
Sbjct: 323 FAA 331


>TC216269 similar to UP|E6_GOSHI (Q01197) Protein E6, partial (17%)
          Length = 1139

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 190 SNAYTNQVQSGGQTILTDNKNNGLVRQSVSNNKTADATKKNAMNEN 235
           +N Y N  Q+  Q    ++  NG+   + +NN  A+  + N  N N
Sbjct: 475 NNKYHNSYQNNNQKYYNNDAANGIYSYNNNNNYNANNNRYNTYNNN 612


>TC206382 homologue to UP|O65501 (O65501) NAD+ dependent isocitrate
           dehydrogenase subunit 1 (AT4g35260/F23E12_180) , partial
           (51%)
          Length = 804

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = -1

Query: 149 TGKKGGLDWEQFAPRVEDYNHFLAKAIA 176
           T ++G LDW  F P    Y HFL   +A
Sbjct: 411 TREEGPLDWLSFVPLFYHYQHFLLTHLA 328


>TC233090 similar to UP|Q9ZVN7 (Q9ZVN7) T7A14.10 protein, partial (22%)
          Length = 594

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -1

Query: 31  KNLIRQEVLIQIPGCRVYLMDEGQAVELAQGQ 62
           +NL R  +L+++P  R+Y++++ Q + L QGQ
Sbjct: 396 RNLGRPYILLELP--RIYILEQEQYLHLYQGQ 307


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,100,750
Number of Sequences: 63676
Number of extensions: 147422
Number of successful extensions: 432
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of query: 378
length of database: 12,639,632
effective HSP length: 99
effective length of query: 279
effective length of database: 6,335,708
effective search space: 1767662532
effective search space used: 1767662532
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)