BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0064b.8
(192 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204787 similar to UP|Q84WK9 (Q84WK9) At4g33985, partial (61%) 37 0.004
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 37 0.006
TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruva... 37 0.007
TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxida... 36 0.010
BU927253 similar to GP|14194119|gb| At1g01540/F22L4_6 {Arabidops... 36 0.013
AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidop... 36 0.013
TC203433 similar to PIR|T09390|T09390 21K protein precursor - al... 35 0.016
TC232008 weakly similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine p... 35 0.016
BE659998 35 0.021
BG882553 similar to GP|1405348|dbj zinc-finger DNA-binding prote... 35 0.021
TC211099 similar to UP|NR41_HUMAN (P22736) Orphan nuclear recept... 35 0.028
TC215081 weakly similar to UP|DAN4_YEAST (P47179) Cell wall prot... 35 0.028
BM522706 homologue to GP|15029368|gb alpha tubulin subunit {Rosa... 35 0.028
TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partia... 34 0.036
TC230594 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP... 34 0.036
TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protei... 34 0.048
TC204788 similar to UP|Q84WK9 (Q84WK9) At4g33985, partial (61%) 34 0.048
TC221434 weakly similar to UP|Q6PAK2 (Q6PAK2) SERTA domain conta... 34 0.048
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 33 0.062
CK606020 33 0.11
>TC204787 similar to UP|Q84WK9 (Q84WK9) At4g33985, partial (61%)
Length = 977
Score = 37.4 bits (85), Expect = 0.004
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Frame = +3
Query: 17 TEDRHRRLHASSRRGD--HGAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMD 74
+ DR RR ++ RRG G A A ++P T +S SS + S+P R SS
Sbjct: 207 SSDRGRRTPSAMRRGSGARGTARTAAARASPMRTWTSSKPASSWASDSIPPPR-TSSINA 383
Query: 75 ATVLDPVVDLSDPV---------------PTPPSPMVE--LSPYAIPQQPSS 109
+ +L P+ + P P PP P+ L P A+P PSS
Sbjct: 384 SPILCPLSASTTPSTSATTTPSSPKPRRPPPPPPPIATAVLPPTAVPTPPSS 539
>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 1056
Score = 37.0 bits (84), Expect = 0.006
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +3
Query: 42 SSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSP------- 94
SSAP+++ SSP SS+ ++S S+ SS ++ P S P PPS
Sbjct: 339 SSAPSSSSSSPASSSSSSSSSSSSSSS*SSPSSSSSSSP---FSSAPPAPPSGAFFELLL 509
Query: 95 MVELSPYAIPQQPSSEETSGEESSSDHEREGSS 127
++EL PY PSS++ S S + SS
Sbjct: 510 LLELLPY---PPPSSDDNSSSPSPNPPSPSSSS 599
Score = 31.2 bits (69), Expect = 0.31
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +3
Query: 26 ASSRRGDHGAATQAVESSAPAATMSSPMVESSA-PAASVPSTRGESSAMDATVLDPVV-- 82
+SS +++ + SS+ +++ SSP SS+ P +S P + + +L ++
Sbjct: 351 SSSSSSPASSSSSSSSSSSSSSS*SSPSSSSSSSPFSSAPPAPPSGAFFELLLLLELLPY 530
Query: 83 -------DLSDPVPTPPSPMVELSP-YAIPQQPSS 109
+ S P P PPSP SP ++P PS+
Sbjct: 531 PPPSSDDNSSSPSPNPPSPSSSSSPSSSLPSSPSA 635
>TC218985 similar to UP|HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (35%)
Length = 598
Score = 36.6 bits (83), Expect = 0.007
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = +2
Query: 49 MSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIPQQPS 108
+S P +S+ P +S P+T SS + L P + P+P PP V P A+P P+
Sbjct: 230 ISPPETKSTPPTSSAPATSPSSSPLLTLPLSPP---APPLPPPPPFPVSTPPPALPSLPN 400
Query: 109 SEETS 113
+ S
Sbjct: 401 TASAS 415
>TC228611 weakly similar to GB|CAA72487.1|1890317|ATP26A peroxidase ATP26a
{Arabidopsis thaliana;} , partial (49%)
Length = 731
Score = 36.2 bits (82), Expect = 0.010
Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Frame = +3
Query: 16 GTEDRHRRLHASSRRGDHGAATQAVESSAPAAT--MSSPMVESSAPAASVPSTRGESSAM 73
GT + R A A++ SS A T SSP S P+A+ ST +
Sbjct: 141 GTPSQASRSPAPPPPPPRSASSSTTASSPTAVTPPSSSPPRPSPGPSATPTSTSPSPATP 320
Query: 74 DATVLDPVVDLSDPVPTP-------PSPMVELSP-YAIPQQPSSEETSGEESSS 119
+ P LS P PTP P P SP A P PSS + E S
Sbjct: 321 STSSSAPRPPLSSPAPTPSPAPTFSPPPPATSSPCSAAPSSPSSSAAATAEPPS 482
Score = 32.0 bits (71), Expect = 0.18
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 5/148 (3%)
Frame = +3
Query: 36 ATQAVESSAPAATMSSPM-VESSAPAAS--VPSTRGESSAMDATVLDPVVDLSDPVPTPP 92
AT + SSAP +SSP S AP S P+T SA ++ ++P PP
Sbjct: 312 ATPSTSSSAPRPPLSSPAPTPSPAPTFSPPPPATSSPCSAAPSSPSSSAAATAEPPSPPP 491
Query: 93 SPMVELSPYAIP-QQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDD 151
P P + P+S + S + G + D+ P +
Sbjct: 492 YPPTSPPPPCPSLKSPNSSPNAASPSKNSSPSVGPTPS--------DSLTAPSSSRTSPT 647
Query: 152 DLIQRVAPFPGGLMTCR-FSRIMLITRL 178
L P P L T R F R++ IT+L
Sbjct: 648 TL-----PPPTTLATLRGFKRLVQITKL 716
>BU927253 similar to GP|14194119|gb| At1g01540/F22L4_6 {Arabidopsis
thaliana}, partial (13%)
Length = 309
Score = 35.8 bits (81), Expect = 0.013
Identities = 24/79 (30%), Positives = 35/79 (43%)
Frame = +3
Query: 35 AATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSP 94
++ A+ SSA A+ SS SS P++S PS+ S++ A + P P P P
Sbjct: 87 SSPNALPSSASASGSSS--ASSSDPSSSSPSSSSPSASPPAAATTTTTTIRTPAPATPPP 260
Query: 95 MVELSPYAIPQQPSSEETS 113
P +PQ P S
Sbjct: 261 -----PSPLPQSPKKSSRS 302
>AI959820 similar to GP|14335118|gb| At1g30200/F12P21_1 {Arabidopsis
thaliana}, partial (19%)
Length = 342
Score = 35.8 bits (81), Expect = 0.013
Identities = 28/87 (32%), Positives = 37/87 (42%)
Frame = +2
Query: 27 SSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSD 86
SSRR ++ A +S+P T P ++PAA ++ SSA P V S
Sbjct: 59 SSRRSK--TSSSASTASSPTTTPLPPPPPPTSPAAPSGTSSASSSAES*NPSKPSVSSSA 232
Query: 87 PVPTPPSPMVELSPYAIPQQPSSEETS 113
P PP P L P P SE T+
Sbjct: 233 PNAPPPPPSRPLPPPPPPPPSPSEPTT 313
Score = 30.8 bits (68), Expect = 0.40
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 46 AATMSSPMVESSAPAASVPST-RGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIP 104
+AT +S+ AAS PS+ R ++S+ +T P + P+P PP P +P
Sbjct: 2 SATSKP*AAAASSRAASTPSSRRSKTSSSASTASSPT---TTPLPPPPPPTSPAAPSGTS 172
Query: 105 QQPSSEET 112
SS E+
Sbjct: 173 SASSSAES 196
Score = 28.1 bits (61), Expect = 2.6
Identities = 23/78 (29%), Positives = 28/78 (35%)
Frame = +2
Query: 35 AATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSP 94
+ T + SSA + S P V SSAP A P S P+P PP P
Sbjct: 161 SGTSSASSSAES*NPSKPSVSSSAPNAPPPPP------------------SRPLPPPPPP 286
Query: 95 MVELSPYAIPQQPSSEET 112
S P+S T
Sbjct: 287 PPSPSEPTTTPTPASPTT 340
>TC203433 similar to PIR|T09390|T09390 21K protein precursor - alfalfa
{Medicago sativa;} , partial (88%)
Length = 825
Score = 35.4 bits (80), Expect = 0.016
Identities = 25/81 (30%), Positives = 39/81 (47%), Gaps = 3/81 (3%)
Frame = +2
Query: 42 SSAPAAT---MSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVEL 98
SS+P +T S P SS+P A+ PST+ +S+ + P PSP
Sbjct: 77 SSSPPST*LPPSQPPPTSSSPPAAPPSTQPSASSPSPSTPPPSSKTPTSSSRQPSPSPST 256
Query: 99 SPYAIPQQPSSEETSGEESSS 119
+P P +PSS+ + E+S+
Sbjct: 257 TPR--PPKPSSQNATNSEASN 313
>TC232008 weakly similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein
kinase-like protein (At5g42440), partial (29%)
Length = 618
Score = 35.4 bits (80), Expect = 0.016
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +2
Query: 43 SAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYA 102
S+PA +SP+ SSA AAS STR S + P + PTP P
Sbjct: 344 SSPAPPTTSPLTSSSAMAASASSTRPVSPTV------PPSPSKNSPPTPSRASASSPPRW 505
Query: 103 IPQQPSSEETSGEESSSDHEREGSS 127
P S+ +TS + S++ + +S
Sbjct: 506 RP*AASATQTSSKSSATGPQARNAS 580
>BE659998
Length = 868
Score = 35.0 bits (79), Expect = 0.021
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -3
Query: 42 SSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPT 90
SS+P + SSP SS + +PST ++++DA P S P PT
Sbjct: 422 SSSPPLSSSSPTPASSRATSDLPSTASSAASVDAASSHPPSATSSPYPT 276
>BG882553 similar to GP|1405348|dbj zinc-finger DNA-binding protein {Homo
sapiens}, partial (1%)
Length = 399
Score = 35.0 bits (79), Expect = 0.021
Identities = 24/97 (24%), Positives = 42/97 (42%)
Frame = +2
Query: 89 PTPPSPMVELSPYAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHG 148
P PP P + P+ ++EE + ++ + E E EEE P G+ G
Sbjct: 5 PLPPLPRHKFKPW------TTEEENNDKDIIEKENEEEEEEEQFFS--------PSGSSG 142
Query: 149 GDDDLIQRVAPFPGGLMTCRFSRIMLITRLPGRGIHS 185
G+ + Q+ +P P G++ SR+ + + R S
Sbjct: 143 GNINKQQKSSPSPSGVVASS-SRVFHVDKFGSRSFTS 250
>TC211099 similar to UP|NR41_HUMAN (P22736) Orphan nuclear receptor NR4A1
(Orphan nuclear receptor HMR) (Early response protein
NAK1) (TR3 orphan receptor), partial (4%)
Length = 898
Score = 34.7 bits (78), Expect = 0.028
Identities = 29/108 (26%), Positives = 40/108 (36%), Gaps = 8/108 (7%)
Frame = +1
Query: 28 SRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATV--LDPVVDLS 85
SR HG ++ S SS +S+ A ++P T SSA T P S
Sbjct: 286 SRLRLHGGGSKPTPSRGSTPPPSSEHASTSSAATTLPGTTSSSSASQRTFSPATPPASAS 465
Query: 86 DPVPTPPS------PMVELSPYAIPQQPSSEETSGEESSSDHEREGSS 127
P+ PS P S P P++ + S S R GS+
Sbjct: 466 PSTPSAPSATTLSAPCASSSATCSPPTPTTPRPASAPSRSGARRGGST 609
>TC215081 weakly similar to UP|DAN4_YEAST (P47179) Cell wall protein DAN4
precursor, partial (3%)
Length = 597
Score = 34.7 bits (78), Expect = 0.028
Identities = 33/102 (32%), Positives = 42/102 (40%), Gaps = 8/102 (7%)
Frame = +3
Query: 26 ASSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPST--------RGESSAMDATV 77
AS+R G+A S AT +S SSAPAAS P+T +S +T
Sbjct: 219 ASARTNPRGSAC----SLTSPATTASFSTTSSAPAASTPTTSTTAVIPPSTPTSTTSSTS 386
Query: 78 LDPVVDLSDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSS 119
P + P PSP P + PS+ TS SSS
Sbjct: 387 STPSASPAAPTSATPSP-----P*SACSPPSAARTSSPNSSS 497
>BM522706 homologue to GP|15029368|gb alpha tubulin subunit {Rosa hybrid
cultivar}, partial (30%)
Length = 433
Score = 34.7 bits (78), Expect = 0.028
Identities = 36/129 (27%), Positives = 52/129 (39%), Gaps = 13/129 (10%)
Frame = +1
Query: 35 AATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVD-LSDP------ 87
A+ V SS +T P SAP++S SSA+ T P+ ++ P
Sbjct: 25 ASCSVVTSSPRMSTPPLPPSRPSAPSSSSTGAPPASSAVSTTSPPPLCPAVTSPRSSAPC 204
Query: 88 --VPTPPSPMVELSPYAIPQQ----PSSEETSGEESSSDHEREGSSEEEHILEEELDADV 141
PTPP P + SP + PS+ ++G E E S E + E D +
Sbjct: 205 A*SPTPP-PSLRSSPASTTSSTSCTPSAPSSTGTSVRVXEEGEFSEAREDLAALEKDYEE 381
Query: 142 VPEGAHGGD 150
V + GGD
Sbjct: 382 VGTESSGGD 408
>TC232621 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (33%)
Length = 1315
Score = 34.3 bits (77), Expect = 0.036
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 35 AATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTP-PS 93
A T A ++AP+ P SSAP A+ S++ +S L + S P+P P
Sbjct: 64 ANTSATSATAPSQFPLPPPPISSAPLATAASSKNSNSQSPTLTLTLPIPSSPTSPSPAPP 243
Query: 94 PMVELSPYAIPQQPS 108
P SP P PS
Sbjct: 244 PFPSSSPAPPPPLPS 288
>TC230594 homologue to UP|Q8LDR0 (Q8LDR0) Zinc finger protein OBP4-like,
partial (24%)
Length = 928
Score = 34.3 bits (77), Expect = 0.036
Identities = 30/92 (32%), Positives = 39/92 (41%)
Frame = +1
Query: 9 STSEDVEGTEDRHRRLHASSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTRG 68
S++ G R R SSRR + AAT + SSA T +SP S A +A G
Sbjct: 259 SSAAAATGG*GRTTRTTTSSRR*NAPAATHSTPSSATTTTTTSP---SRAISARTAVATG 429
Query: 69 ESSAMDATVLDPVVDLSDPVPTPPSPMVELSP 100
+A AT V + PT P P + P
Sbjct: 430 PKAASSATSPLAAVAGNQNAPTSPKPPPQPPP 525
>TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protein, partial
(25%)
Length = 1153
Score = 33.9 bits (76), Expect = 0.048
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = +3
Query: 34 GAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPS 93
G++ ++ +S P AT SSP S+ A +V SSA AT P PPS
Sbjct: 207 GSSRKSASTSPPGATPSSPPTSSATAAPTV------SSATSATWTKS--------PPPPS 344
Query: 94 PMVELSPYAIPQQPSSEETS 113
P S A P + S +S
Sbjct: 345 PSSSTSAIATPTKTSRHSSS 404
>TC204788 similar to UP|Q84WK9 (Q84WK9) At4g33985, partial (61%)
Length = 1517
Score = 33.9 bits (76), Expect = 0.048
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Frame = +1
Query: 5 KRSRSTSEDVEGTEDRHRRLHASSRRGD--HGAATQAVESSAPAATMSSPMVESSAPAAS 62
+R RS+S R RR +++RRG G A ++P T +S SS S
Sbjct: 187 RRRRSSSSG------RGRRTPSATRRGSAARGTGRTAAVRASPMRTWTSSRPASS*ALDS 348
Query: 63 VPSTRGES---------------SAMDATVLDPVVDLSDPVPTPPSPMVE---LSPYAIP 104
+P R S + +AT P P PP P + L+P A+P
Sbjct: 349 IPPPRSSSINASPILYPLSASTTPSTNATTTPLSPKPRRPPPPPPPPPIATALLAPTAVP 528
Query: 105 QQPSS 109
PSS
Sbjct: 529 TPPSS 543
>TC221434 weakly similar to UP|Q6PAK2 (Q6PAK2) SERTA domain containing 4,
partial (7%)
Length = 820
Score = 33.9 bits (76), Expect = 0.048
Identities = 34/138 (24%), Positives = 56/138 (39%), Gaps = 6/138 (4%)
Frame = +3
Query: 10 TSEDVEGTEDRHRRLHASSRRGDHGAA-TQAVESSAPAATMSSPMVESSAPAASVPSTRG 68
T ++ +DR R+ + A+ T ++E S + +S E S P + S
Sbjct: 21 TEAVIDSLKDREIRIPEVEQPPVRSASSTMSIEPSDKNDSHASNSHEISKPVETESSLLN 200
Query: 69 ESSAMDAT---VLDPVVDLSDPVPTPPSPMVELSPYAIPQQPSSE-ETSGEESSSDHERE 124
S +T L+P+ S+ + PSP+ LS IP P +TS S D E
Sbjct: 201 HSDKTISTSSDALEPLKTESNSISVIPSPVTSLSSSKIPSSPLPPLDTSSVTESGDTESA 380
Query: 125 GSSEEEHI-LEEELDADV 141
+ + L+ D D+
Sbjct: 381 STGNDSSASLQSSSDTDI 434
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 33.5 bits (75), Expect = 0.062
Identities = 30/94 (31%), Positives = 44/94 (45%), Gaps = 8/94 (8%)
Frame = +3
Query: 42 SSAPAATMSSPMVESSAPAASVPSTRGE-SSAMDATVLDPVVDLSDPVPTPPSP------ 94
SSAP+++ SSP SS+ ++S S+ SS ++ P S P PPS
Sbjct: 303 SSAPSSSSSSPPSSSSSSSSSSSSSSSS*SSPSSSSSSSP---FSSAPPAPPSGAFFELL 473
Query: 95 -MVELSPYAIPQQPSSEETSGEESSSDHEREGSS 127
++EL PY PSS++ S S + SS
Sbjct: 474 LLLELLPY---PPPSSDDNSSSPSPNPPSPSSSS 566
Score = 30.8 bits (68), Expect = 0.40
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +3
Query: 26 ASSRRGDHGAATQAVESSAPAATMSSPMVESSA-PAASVPSTRGESSAMDATVLDPVV-- 82
+SS +++ + SS+ +++ SSP SS+ P +S P + + +L ++
Sbjct: 318 SSSSSPPSSSSSSSSSSSSSSSS*SSPSSSSSSSPFSSAPPAPPSGAFFELLLLLELLPY 497
Query: 83 -------DLSDPVPTPPSPMVELSP-YAIPQQPSS 109
+ S P P PPSP SP ++P PS+
Sbjct: 498 PPPSSDDNSSSPSPNPPSPSSSSSPSSSLPSSPSA 602
>CK606020
Length = 340
Score = 32.7 bits (73), Expect = 0.11
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 86 DPVPTPPSPMV---ELSPYAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVV 142
+P+ P SP+ E+ P ++ EE EE + E E EEE EEE++ +V
Sbjct: 136 NPMSLPDSPVANDDEIDPSLDEEEEEEEEE--EEEEEEEEEEEIEEEEEEEEEEVEEEVE 309
Query: 143 PEGAHG 148
E G
Sbjct: 310 EEEVEG 327
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.307 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,102,257
Number of Sequences: 63676
Number of extensions: 102642
Number of successful extensions: 1882
Number of sequences better than 10.0: 300
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of query: 192
length of database: 12,639,632
effective HSP length: 92
effective length of query: 100
effective length of database: 6,781,440
effective search space: 678144000
effective search space used: 678144000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0064b.8