BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0062.3
(108 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208265 similar to UP|Q6S7B0 (Q6S7B0) TAF5, partial (36%) 73 2e-14
TC228488 similar to UP|Q8LF96 (Q8LF96) PRL1 protein, partial (70%) 61 7e-11
TC222867 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Frag... 59 3e-10
AW830482 similar to GP|22022579|gb AT3g05090/T12H1_5 {Arabidopsi... 57 1e-09
BI787980 similar to SP|P25387|GBLP Guanine nucleotide-binding pr... 57 1e-09
BM886800 homologue to GP|13991907|gb receptor for activated prot... 55 7e-09
TC205059 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-... 54 1e-08
TC204561 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-... 54 1e-08
TC221163 53 2e-08
TC209377 similar to UP|Q9FLX9 (Q9FLX9) Notchless protein homolog... 52 3e-08
TC220739 weakly similar to UP|PRP4_HUMAN (O43172) U4/U6 small nu... 52 4e-08
TC229098 similar to PIR|T46032|T46032 WD-40 repeat regulatory pr... 52 6e-08
TC230191 weakly similar to GB|AAF44683.1|7271905|AF239765 nuclea... 50 2e-07
TC207354 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat prot... 50 2e-07
TC205974 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-inter... 50 2e-07
TC211342 similar to UP|Q9LVF2 (Q9LVF2) Arabidopsis thaliana geno... 48 6e-07
TC228105 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {A... 48 8e-07
TC228794 similar to UP|Q6V8V0 (Q6V8V0) Transducin-like (Fragment... 47 1e-06
BE661387 47 1e-06
TC206578 weakly similar to UP|Q8MSF3 (Q8MSF3) GM21396p, partial ... 47 1e-06
>TC208265 similar to UP|Q6S7B0 (Q6S7B0) TAF5, partial (36%)
Length = 1048
Score = 72.8 bits (177), Expect = 2e-14
Identities = 36/94 (38%), Positives = 50/94 (52%)
Frame = +2
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+ +G ++K VR+WD +SG GH I +L + GR+ SG D I +WDL
Sbjct: 284 IATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSG 463
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
RCL HT VW+LA +S S + SG D +V
Sbjct: 464 RCLTPLIGHTSCVWSLAFSSEGSVIASGSADCTV 565
Score = 46.6 bits (109), Expect = 2e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
M+ G + SG + + +WD SG L GHT + +L S G SGS+D ++
Sbjct: 389 MSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGSADCTVK 568
Query: 61 LWDL 64
LWD+
Sbjct: 569 LWDV 580
Score = 44.7 bits (104), Expect = 7e-06
Identities = 21/97 (21%), Positives = 42/97 (42%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G S ++ R+W + GH ++ + + + +GSSD +RLWD+
Sbjct: 149 GHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDV 328
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
C+ + H + +LA + ++ SG D ++
Sbjct: 329 QSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTI 439
Score = 40.0 bits (92), Expect = 2e-04
Identities = 20/97 (20%), Positives = 42/97 (42%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G ++S + +R+W + + + KGH + + G + S S D R+W +
Sbjct: 23 GDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSM 202
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
+ + L A H V + + +++ +G D +V
Sbjct: 203 DRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTV 313
>TC228488 similar to UP|Q8LF96 (Q8LF96) PRL1 protein, partial (70%)
Length = 1303
Score = 61.2 bits (147), Expect = 7e-11
Identities = 26/84 (30%), Positives = 43/84 (50%)
Frame = +3
Query: 15 KVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYA 74
+ +++WD SG + L GH + +R L + + + S D ++ WDL Q + + SY
Sbjct: 576 RTIKIWDLASGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYH 755
Query: 75 VHTDSVWALASTSTFSHVYSGGRD 98
H V+ LA T + +GGRD
Sbjct: 756 GHLSGVYCLALHPTIDVLLTGGRD 827
Score = 52.8 bits (125), Expect = 3e-08
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 6 TLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLG 65
T + S G +K V+ WD GH + L L T L+G DS+ R+WD+
Sbjct: 675 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIR 854
Query: 66 QQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
+ +H+ + H ++V ++ + T V +G D ++
Sbjct: 855 SKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTI 962
Score = 52.4 bits (124), Expect = 3e-08
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +3
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
+L++GG + V RVWD RS + L GH + + ++ T ++GS D+ I++WDL
Sbjct: 804 VLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKMWDLRY 983
Query: 67 QRCLHSYAVHTDSVWALA 84
+ + + H SV A+A
Sbjct: 984 GKTMSTLTNHKKSVRAMA 1037
>TC222867 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragment),
partial (23%)
Length = 591
Score = 59.3 bits (142), Expect = 3e-10
Identities = 29/98 (29%), Positives = 49/98 (49%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+V+ +K +R+W GS +GHT ++ L + G +S +D +++LW +
Sbjct: 94 VVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQIVSCGADGLVKLWTVKTN 273
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVF 105
C+ +Y H D VWALA + +GG D V+ F
Sbjct: 274 ECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWF 387
Score = 35.8 bits (81), Expect = 0.003
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = +1
Query: 19 VWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTD 78
VW + KGH I ++ + ++ S D IR+W + CL ++ HT
Sbjct: 1 VWRLPDLVSVVVFKGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTS 180
Query: 79 SVWALASTSTFSHVYSGGRD 98
SV + + + S G D
Sbjct: 181SVLRALFVTRGTQIVSCGAD 240
Score = 33.9 bits (76), Expect = 0.012
Identities = 15/58 (25%), Positives = 28/58 (47%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
GT +VS G + +V++W ++ H D + AL + +G D+++ LW
Sbjct: 211 GTQIVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLW 384
>AW830482 similar to GP|22022579|gb AT3g05090/T12H1_5 {Arabidopsis thaliana},
partial (14%)
Length = 388
Score = 57.4 bits (137), Expect = 1e-09
Identities = 26/30 (86%), Positives = 28/30 (92%)
Frame = +3
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMK 30
MNE GT+LVSGGTEKVVRVWD RSGSKT+K
Sbjct: 297 MNESGTILVSGGTEKVVRVWDTRSGSKTLK 386
Score = 36.2 bits (82), Expect = 0.002
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 32 KGHTDNIRALLLDSTGRFCLSGSSDSMIRLWD 63
KGH D++ AL ++ +G +SG ++ ++R+WD
Sbjct: 264 KGHKDSVYALAMNESGTILVSGGTEKVVRVWD 359
>BI787980 similar to SP|P25387|GBLP Guanine nucleotide-binding protein beta
subunit-like protein. {Chlamydomonas reinhardtii},
partial (33%)
Length = 421
Score = 57.0 bits (136), Expect = 1e-09
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Frame = +3
Query: 3 EGGTLLVSGGTEKVVRVWDPRS-----GSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDS 57
E LL++ +K + VW + G +L+GH+ + +++ S G+F LSGS D
Sbjct: 90 ENPNLLLTASRDKSLLVWQLSNDGEEYGFARRRLQGHSHYVEDVVISSDGQFALSGSWDG 269
Query: 58 MIRLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
+RLWDL + HT V ++A ++ + SG RD +V
Sbjct: 270 TLRLWDLNTGITTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTV 401
Score = 45.1 bits (105), Expect = 5e-06
Identities = 18/63 (28%), Positives = 35/63 (54%)
Frame = +3
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G +SG + +R+WD +G T + GHT ++ ++ + R +SGS D ++
Sbjct: 225 ISSDGQFALSGSWDGTLRLWDLNTGITTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTVK 404
Query: 61 LWD 63
LW+
Sbjct: 405 LWN 413
>BM886800 homologue to GP|13991907|gb receptor for activated protein kinase C
RACK1 {Heliothis virescens}, partial (43%)
Length = 428
Score = 54.7 bits (130), Expect = 7e-09
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = +1
Query: 7 LLVSGGTEKVVRVW-----DPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRL 61
+++S +K + VW D G +L GH+ + ++L S G + LSGS D +RL
Sbjct: 88 MILSCSRDKTLIVWKLTRDDHSYGIPQKRLYGHSHFVSDVVLSSDGNYALSGSWDKTLRL 267
Query: 62 WDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
WDL R + HT V ++A + + SG RD ++
Sbjct: 268 WDLAAGRSTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTI 387
Score = 46.2 bits (108), Expect = 2e-06
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +1
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G +SG +K +R+WD +G T + + HT ++ ++ R +SGS D I+
Sbjct: 211 LSSDGNYALSGSWDKTLRLWDLAAGRSTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIK 390
Query: 61 LWD 63
LW+
Sbjct: 391 LWN 399
>TC205059 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1492
Score = 53.5 bits (127), Expect = 1e-08
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Frame = +2
Query: 3 EGGTLLVSGGTEKVVRVW-----DPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDS 57
+ ++V+ +K + +W D G +L GH+ ++ ++L S G+F LSGS D
Sbjct: 296 DNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDG 475
Query: 58 MIRLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
+RLWDL + HT V ++A + + S RD ++
Sbjct: 476 ELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTI 607
Score = 44.7 bits (104), Expect = 7e-06
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +2
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+VS ++ V+VW+ + L GH + + + G C SG D +I LWDL +
Sbjct: 716 IVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 895
Query: 68 RCLHS 72
+ L+S
Sbjct: 896 KRLYS 910
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +2
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G +SG + +R+WD +G+ + GHT ++ ++ R +S S D I+
Sbjct: 431 LSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIK 610
Query: 61 LWD 63
LW+
Sbjct: 611 LWN 619
Score = 36.2 bits (82), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G+L SGG + V+ +WD G + L +I L S R+ L +++ I++WDL
Sbjct: 833 GSLCASGGKDGVILLWDLAEGKRLYSL--DAGSIIHALCFSPNRYWLCAATEQSIKIWDL 1006
Score = 27.7 bits (60), Expect = 0.88
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +2
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKG--HTDNIRALLLDSTGR--FCLSGSSDSMIRLWD 63
+VS ++ +++W+ K G H+D + + + +S S D +++W+
Sbjct: 578 IVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 757
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
L + ++ A H V +A + S SGG+D
Sbjct: 758 LTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKD 862
>TC204561 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1419
Score = 53.5 bits (127), Expect = 1e-08
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Frame = +1
Query: 3 EGGTLLVSGGTEKVVRVW-----DPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDS 57
+ ++V+ +K + +W D G +L GH+ ++ ++L S G+F LSGS D
Sbjct: 220 DNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDG 399
Query: 58 MIRLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
+RLWDL + HT V ++A + + S RD ++
Sbjct: 400 ELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTI 531
Score = 44.7 bits (104), Expect = 7e-06
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+VS ++ V+VW+ + L GH + + + G C SG D +I LWDL +
Sbjct: 640 IVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 819
Query: 68 RCLHS 72
+ L+S
Sbjct: 820 KRLYS 834
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +1
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G +SG + +R+WD +G+ + GHT ++ ++ R +S S D I+
Sbjct: 355 LSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIK 534
Query: 61 LWD 63
LW+
Sbjct: 535 LWN 543
Score = 36.2 bits (82), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G+L SGG + V+ +WD G + L +I L S R+ L +++ I++WDL
Sbjct: 757 GSLCASGGKDGVILLWDLAEGKRLYSL--DAGSIIHALCFSPNRYWLCAATEQSIKIWDL 930
Score = 27.7 bits (60), Expect = 0.88
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKG--HTDNIRALLLDSTGR--FCLSGSSDSMIRLWD 63
+VS ++ +++W+ K G H+D + + + +S S D +++W+
Sbjct: 502 IVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 681
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
L + ++ A H V +A + S SGG+D
Sbjct: 682 LTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKD 786
>TC221163
Length = 832
Score = 53.1 bits (126), Expect = 2e-08
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +3
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKG---HTDNIRALLLDSTGRFCLSGSSDSMIRL 61
G ++ +G + +R+W+P++G T ++G HT+ + L ++ST LSGS D + +
Sbjct: 105 GKIICTGSDDATLRIWNPKTGESTHVVRGHPYHTEGLTCLTINSTSTLALSGSKDGSVHI 284
Query: 62 WDLGQQRCL--HSYAVHTDSVWALASTSTFSHVYSGGRD 98
++ R + ++ A H+DS+ + + S GG D
Sbjct: 285 VNITTGRVVDNNALASHSDSIECVGFAPSGSWAAVGGMD 401
Score = 43.9 bits (102), Expect = 1e-05
Identities = 21/53 (39%), Positives = 31/53 (57%)
Frame = +3
Query: 4 GGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSD 56
G + + SG + VR+WD RSG LKGH+D I++L + S + +S S D
Sbjct: 489 GASYVASGCVDGKVRLWDSRSGECVKTLKGHSDAIQSLSVSSNRNYLVSASVD 647
Score = 38.5 bits (88), Expect = 5e-04
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +3
Query: 5 GTLLVSGGTEKVVRVWD-----PRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMI 59
G+ GG +K + +WD PR + H D + L + SG D +
Sbjct: 372 GSWAAVGGMDKKLIIWDIEHLLPRGTCE------HEDGVTCLAWLGAS-YVASGCVDGKV 530
Query: 60 RLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSA 103
RLWD C+ + H+D++ +L+ +S +++ S D + A
Sbjct: 531 RLWDSRSGECVKTLKGHSDAIQSLSVSSNRNYLVSASVDGTACA 662
>TC209377 similar to UP|Q9FLX9 (Q9FLX9) Notchless protein homolog
(At5g52820), partial (33%)
Length = 669
Score = 52.4 bits (124), Expect = 3e-08
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G + S +K V++W+ +G +GH + + + R LSGS DS +++WD+
Sbjct: 161 GQWVASASFDKSVKLWNGTTGKFVTAFRGHVGPVYQISWSADSRLLLSGSKDSTLKVWDI 340
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
++ H D V+++ + V SGG+D
Sbjct: 341 RTRKLKQDLPGHADEVFSVDWSPDGEKVASGGKD 442
Score = 41.2 bits (95), Expect = 8e-05
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
LL+SG + ++VWD R+ L GH D + ++ G SG D +++LW
Sbjct: 293 LLLSGSKDSTLKVWDIRTRKLKQDLPGHADEVFSVDWSPDGEKVASGGKDKVLKLW 460
Score = 30.4 bits (67), Expect = 0.14
Identities = 17/82 (20%), Positives = 39/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 19 VWDP--RSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVH 76
+W+P KT ++ GH + + G++ S S D ++LW+ + + ++ H
Sbjct: 74 LWEPFINKHPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVTAFRGH 250
Query: 77 TDSVWALASTSTFSHVYSGGRD 98
V+ ++ ++ + SG +D
Sbjct: 251 VGPVYQISWSADSRLLLSGSKD 316
>TC220739 weakly similar to UP|PRP4_HUMAN (O43172) U4/U6 small nuclear
ribonucleoprotein Prp4 (U4/U6 snRNP 60 kDa protein) (WD
splicing factor Prp4) (hPrp4), partial (34%)
Length = 1206
Score = 52.0 bits (123), Expect = 4e-08
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G+L S G + + RVWD R+G + L+GH + + G +G D+ R+WDL
Sbjct: 481 GSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 660
Query: 65 GQQRCLHSYAVHTDSV 80
+++ ++ H++ +
Sbjct: 661 RKKKSFYTIPAHSNLI 708
Score = 49.3 bits (116), Expect = 3e-07
Identities = 25/94 (26%), Positives = 45/94 (47%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L + +K R+WD +G + + +GH+ ++ L + G S DS+ R+WDL
Sbjct: 355 GKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHNDGSLAASCGLDSLARVWDL 534
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
R + + H V ++ + H+ +GG D
Sbjct: 535 RTGRSILALEGHVKPVLGISFSPNGYHLATGGED 636
Score = 37.0 bits (84), Expect = 0.001
Identities = 25/91 (27%), Positives = 41/91 (44%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
L + ++ + W+ S KT + GH D + + +G++ + S D RLWD+
Sbjct: 244 LATASADRTAKYWNQGSLLKTFE--GHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETG 417
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
L H+ SV+ LA + S S G D
Sbjct: 418 DELLLQEGHSRSVYGLAFHNDGSLAASCGLD 510
Score = 29.6 bits (65), Expect = 0.23
Identities = 15/58 (25%), Positives = 25/58 (42%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
G LV+ + +VW R L GH + ++ + G ++ S D I+LW
Sbjct: 736 GYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGSIVTVSHDRTIKLW 909
>TC229098 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
homolog - Arabidopsis thaliana {Arabidopsis thaliana;} ,
partial (59%)
Length = 580
Score = 51.6 bits (122), Expect = 6e-08
Identities = 23/69 (33%), Positives = 36/69 (51%)
Frame = +3
Query: 2 NEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRL 61
N ++VSG ++ VRVWD +SG L H+D + A+ + G +S S D + R+
Sbjct: 81 NPQSNIIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 260
Query: 62 WDLGQQRCL 70
WD C+
Sbjct: 261 WDASTGHCM 287
Score = 49.3 bits (116), Expect = 3e-07
Identities = 25/81 (30%), Positives = 39/81 (47%)
Frame = +3
Query: 18 RVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHT 77
R+WD +GS L GHT+ + + + +SGS D +R+WD+ +CL H+
Sbjct: 3 RLWDVPTGSLIKTLHGHTNYVFCVNFNPQSNIIVSGSFDETVRVWDVKSGKCLKVLPAHS 182
Query: 78 DSVWALASTSTFSHVYSGGRD 98
D V A+ S + S D
Sbjct: 183DPVTAVDFNRDGSLIVSSSYD 245
Score = 37.4 bits (85), Expect = 0.001
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDN---IRALLLDSTGRFCLSGSSDSMIRLWDL 64
++ G + +R+W+ +G GH ++ I + + G++ + GS ++ I LWDL
Sbjct: 354 ILVGTLDNTLRLWNYSTGKFLKTYTGHVNSKYCISSTFSTTNGKYIVGGSEENYIYLWDL 533
Query: 65 GQQRCLHSYAVHTDS 79
++ + H+D+
Sbjct: 534 QSRKIVQKLEGHSDA 578
Score = 30.0 bits (66), Expect = 0.18
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +3
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTD 36
G +V G E + +WD +S KL+GH+D
Sbjct: 480 GKYIVGGSEENYIYLWDLQSRKIVQKLEGHSD 575
>TC230191 weakly similar to GB|AAF44683.1|7271905|AF239765 nuclear protein
Ytm1p {Mus musculus;} , partial (6%)
Length = 1106
Score = 50.1 bits (118), Expect = 2e-07
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +2
Query: 3 EGGTLLVSGGTEKVVRVWDPR---SGSKTMKLKGHTDNIRALLL-DSTGRFCLSGSSDSM 58
EG L+ +GG++ V+R+WDPR + + + HT I A D + LS S D
Sbjct: 290 EGSALIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHTSWISACKWHDQSWFHLLSASYDGK 469
Query: 59 IRLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ LWDL L H+D V + A + V SGG D
Sbjct: 470 VMLWDLRTAWPLSVIESHSDKVLS-ADWWKSNSVISGGAD 586
>TC207354 weakly similar to UP|WDR5_HUMAN (P61964) WD-repeat protein 5,
partial (57%)
Length = 1124
Score = 49.7 bits (117), Expect = 2e-07
Identities = 25/94 (26%), Positives = 47/94 (49%), Gaps = 1/94 (1%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMK-LKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
+ S ++ +R+WD G +K L+GH D + + + + +SGS D I++WD+
Sbjct: 307 ICSASDDRTLRIWDATVGGGCIKILRGHDDAVFCVNFNPQSSYIVSGSFDETIKVWDVKT 486
Query: 67 QRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFS 100
+C+H+ HT V ++ + + S D S
Sbjct: 487 GKCVHTIKGHTMPVTSVHYNRDGNLIISASHDGS 588
Score = 48.1 bits (113), Expect = 6e-07
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
GTLL S +K + +W + + +L GH++ I L S + S S D +R+WD
Sbjct: 172 GTLLASASLDKTLIIWSSATLTLCHRLVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 351
Query: 65 G-QQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
C+ H D+V+ + S++ SG D ++
Sbjct: 352 TVGGGCIKILRGHDDAVFCVNFNPQSSYIVSGSFDETI 465
Score = 45.4 bits (106), Expect = 4e-06
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 2 NEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRL 61
N + +VSG ++ ++VWD ++G +KGHT + ++ + G +S S D ++
Sbjct: 418 NPQSSYIVSGSFDETIKVWDVKTGKCVHTIKGHTMPVTSVHYNRDGNLIISASHDGSCKI 597
Query: 62 WD 63
WD
Sbjct: 598 WD 603
>TC205974 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
protein 1, partial (57%)
Length = 783
Score = 49.7 bits (117), Expect = 2e-07
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Frame = +3
Query: 6 TLLVSGGTEKVVRVWDPRSGS---KTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
T ++S G + V+R+WD +G ++ K GH + +L + G L+GS D RLW
Sbjct: 63 TTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLW 242
Query: 63 DLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGG 96
D + +Y V V A+ + HV GG
Sbjct: 243 DTRSLTLIKTY-VTERPVNAVTMSPLLDHVVIGG 341
>TC211342 similar to UP|Q9LVF2 (Q9LVF2) Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MIL23, partial (29%)
Length = 862
Score = 48.1 bits (113), Expect = 6e-07
Identities = 22/101 (21%), Positives = 46/101 (44%)
Frame = +1
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G L+V+G +K +++W G + H D++ A+ + S D +++
Sbjct: 370 ISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVK 549
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
WD + L + H +W LA ++ + +G D S+
Sbjct: 550 YWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSI 672
Score = 42.0 bits (97), Expect = 5e-05
Identities = 22/70 (31%), Positives = 35/70 (49%)
Frame = +1
Query: 29 MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTDSVWALASTST 88
+ L GH + + + S G ++GS+D I++W L C S H DSV A+
Sbjct: 328 LSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPK 507
Query: 89 FSHVYSGGRD 98
+V+S G+D
Sbjct: 508 THYVFSVGKD 537
Score = 41.2 bits (95), Expect = 8e-05
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +1
Query: 10 SGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQR 68
S G +++V+ WD + L+GH +I L + + G F ++GS D IR WD +++
Sbjct: 523 SVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQ 699
Score = 29.6 bits (65), Expect = 0.23
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +1
Query: 25 GSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTDSVWALA 84
G+ L GH + L + G SGS D+ + LWD+ + L H D
Sbjct: 10 GTCETTLNGHKGAVTTLRYNKAGSLLASGSRDNDVILWDVVGETGLFRLRGHRDQAAKQL 189
Query: 85 STSTFS 90
+ S S
Sbjct: 190TVSNVS 207
>TC228105 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
thaliana;} , complete
Length = 1113
Score = 47.8 bits (112), Expect = 8e-07
Identities = 27/96 (28%), Positives = 44/96 (45%)
Frame = +3
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
LL + + V ++D + + GH + + + G +GSSD +RLWDL
Sbjct: 639 LLFTASDDGNVHMYDAEGKALIGTMSGHASWVLCVDVSPDGAAIATGSSDRSVRLWDLNM 818
Query: 67 QRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVS 102
+ + + + H+D VW +A GGR SVS
Sbjct: 819 RASVQTMSNHSDQVWGVAFRPPGGSDVRGGRLASVS 926
Score = 30.4 bits (67), Expect = 0.14
Identities = 21/87 (24%), Positives = 34/87 (38%), Gaps = 13/87 (14%)
Frame = +3
Query: 3 EGGTLLVSGGTEKVVRVWDPRS-------------GSKTMKLKGHTDNIRALLLDSTGRF 49
+G L V+GG V++WD S G K G + ++ G+
Sbjct: 333 KGAILAVAGGGSASVKLWDTSSWELVATLSIPRPEGQKPTDKSGSKKFVLSVAWSPDGKR 512
Query: 50 CLSGSSDSMIRLWDLGQQRCLHSYAVH 76
GS D I ++D+ + + LH H
Sbjct: 513 LACGSMDGTISVFDVPRAKFLHHLEGH 593
Score = 29.6 bits (65), Expect = 0.23
Identities = 16/65 (24%), Positives = 28/65 (42%), Gaps = 6/65 (9%)
Frame = +3
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLL------DSTGRFCLSGSSDSM 58
G + +G +++ VR+WD + + H+D + + D G S S D
Sbjct: 759 GAAIATGSSDRSVRLWDLNMRASVQTMSNHSDQVWGVAFRPPGGSDVRGGRLASVSDDKS 938
Query: 59 IRLWD 63
I L+D
Sbjct: 939 ISLYD 953
>TC228794 similar to UP|Q6V8V0 (Q6V8V0) Transducin-like (Fragment), complete
Length = 870
Score = 47.4 bits (111), Expect = 1e-06
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
+ +GG + V++WD R G TM L+GH D I A+ L G + L+ D + +W
Sbjct: 705 IFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITAMQLSPDGSYLLTNGMDCKLCIW 869
Score = 38.1 bits (87), Expect = 7e-04
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 2 NEGGTLLVSGGTEKVVRVWDPRSGSKT-MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
N G+++ SG ++ + +W+ K M LKGH + + L + G +S S D +R
Sbjct: 306 NPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDKTVR 485
Query: 61 LWDLGQQRCLHSYAVHTDSV 80
WD+ + + H V
Sbjct: 486 AWDVETGKQIKKMVEHLSYV 545
Score = 34.3 bits (77), Expect = 0.009
Identities = 20/95 (21%), Positives = 40/95 (42%)
Frame = +3
Query: 4 GGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWD 63
G L+VSG + ++WD R D++ + +G D+ +++WD
Sbjct: 570 GPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVGFSDASDKI-FTGGIDNDVKIWD 746
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
L + + H D + A+ + S++ + G D
Sbjct: 747 LRKGEVTMTLQGHQDMITAMQLSPDGSYLLTNGMD 851
Score = 29.6 bits (65), Expect = 0.23
Identities = 23/79 (29%), Positives = 34/79 (42%), Gaps = 1/79 (1%)
Frame = +3
Query: 26 SKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL-GQQRCLHSYAVHTDSVWALA 84
S M L GH I + + G SGS D I LW++ G + H ++V L
Sbjct: 252 SPIMLLSGHQSAIYTMKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLH 431
Query: 85 STSTFSHVYSGGRDFSVSA 103
T+ + + S D +V A
Sbjct: 432 WTTDGTQIVSASPDKTVRA 488
>BE661387
Length = 636
Score = 47.4 bits (111), Expect = 1e-06
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
L++G + +VWD ++ S L+GHT N+ A+ ++GS D +R+W
Sbjct: 127 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTY 306
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSG 95
R ++ + VWA+ + V G
Sbjct: 307 RLENTLNYGLERVWAIGYLKSSRRVVIG 390
>TC206578 weakly similar to UP|Q8MSF3 (Q8MSF3) GM21396p, partial (67%)
Length = 1363
Score = 47.4 bits (111), Expect = 1e-06
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVW--DPRSGSKT--MKLKGHTDNIRALLLD-STGRFCLSGSSDSMI 59
GT L SG ++ R+W +P K ++LKGHTD++ L D + S D +
Sbjct: 241 GTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTV 420
Query: 60 RLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLKK 108
RLWD +C + +++ + +HV G RD ++ + ++K
Sbjct: 421 RLWDARSGKCSQQAELSGENI-NITYKPDGTHVAVGNRDDELTILDVRK 564
Score = 40.0 bits (92), Expect = 2e-04
Identities = 23/73 (31%), Positives = 36/73 (48%)
Frame = +1
Query: 31 LKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTDSVWALASTSTFS 90
L HT + +D GR+ GS+DS++ LWD+ + C+ ++ T W + T
Sbjct: 706 LMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTF---TKLEWPV---RTIG 867
Query: 91 HVYSGGRDFSVSA 103
Y+G DF SA
Sbjct: 868 FNYTG--DFIASA 900
Score = 29.6 bits (65), Expect = 0.23
Identities = 16/65 (24%), Positives = 32/65 (48%)
Frame = +1
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
L+ + +K VR+WD RSG + + + +NI + G G+ D + + D+ +
Sbjct: 388 LIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHVAVGNRDDELTILDVRK 564
Query: 67 QRCLH 71
+ +H
Sbjct: 565 FKPIH 579
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,323,450
Number of Sequences: 63676
Number of extensions: 73167
Number of successful extensions: 595
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of query: 108
length of database: 12,639,632
effective HSP length: 84
effective length of query: 24
effective length of database: 7,290,848
effective search space: 174980352
effective search space used: 174980352
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0062.3