BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.3
(388 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF009896 GP|14335162|gb At1g53910/T18A20_14 {Arabidopsis thalian... 31 1.1
TC206922 similar to UP|Q9LYY2 (Q9LYY2) DNAJ protein-like, partia... 28 5.4
BE059776 28 5.4
TC206165 28 5.4
TC220198 28 5.4
TC203847 homologue to UP|Q7PCX0 (Q7PCX0) ENSANGP00000000125 (AgC... 28 7.0
TC205944 28 7.0
TC205537 similar to GB|AAP37774.1|30725504|BT008415 At4g03260 {A... 28 7.0
TC210340 similar to GB|AAM47357.1|21360483|AY113049 AT5g64160/MH... 28 7.0
TC214844 homologue to UP|Q9FUP4 (Q9FUP4) 60S ribosomal protein L... 28 9.2
BE802991 28 9.2
TC208453 similar to UP|O04033 (O04033) F7G19.16 protein, partial... 28 9.2
TC216778 UP|O24431 (O24431) Calmodulin-like domain protein kinas... 28 9.2
BM732647 28 9.2
>BF009896 GP|14335162|gb At1g53910/T18A20_14 {Arabidopsis thaliana}, partial
(3%)
Length = 246
Score = 30.8 bits (68), Expect = 1.1
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +1
Query: 310 LYDGCFCYDVLHICS 324
LYD C CYDV+ ICS
Sbjct: 136 LYDPCLCYDVIFICS 180
>TC206922 similar to UP|Q9LYY2 (Q9LYY2) DNAJ protein-like, partial (98%)
Length = 752
Score = 28.5 bits (62), Expect = 5.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 172 LHPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSCRCYSELKVVNHGYSCSR 227
L P + L +I T Q GV I ++ W+ P+ S + V HGY+C R
Sbjct: 511 LKPVQAFLSIILTVQTGVLIRCQLLIF------WSSPN*FL*SHCEKVEHGYACIR 660
>BE059776
Length = 306
Score = 28.5 bits (62), Expect = 5.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 219 VNHGYSCSRCCRTMIMIFYFYRYRLNVHVSDGV--QSSVFIL 258
V++ + S C I+ F FYR L+V +SD V Q ++F L
Sbjct: 236 VSNIFRLSCVCEVEIVFFKFYRNLLHVXISDQVLSQKAIFFL 111
>TC206165
Length = 1199
Score = 28.5 bits (62), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 219 VNHGYSCSRCCRTMIMIFYFYRYRLNVHVSDGV 251
+ SCS CC +I + RY+LNV + G+
Sbjct: 1091 IRRSISCSDCCAKVIFLLLL-RYKLNVIIFSGI 1186
>TC220198
Length = 868
Score = 28.5 bits (62), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 153 VEYLGYRDSEFNLQDDFIHLHPAKTLLQLIHTEQRGVFIVQARI 196
V+YL + F ++ HL+ AK+LLQ I T + G I A +
Sbjct: 655 VDYLTIAITFFPIKMFIFHLYLAKSLLQKIQTSRTGCLISYASV 786
>TC203847 homologue to UP|Q7PCX0 (Q7PCX0) ENSANGP00000000125 (AgCP7259)
(Fragment), partial (95%)
Length = 1000
Score = 28.1 bits (61), Expect = 7.0
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -2
Query: 244 NVHVSDGVQSSVFILSDPEATHIIKKACEEFA 275
NVH SDG+ +SVF + D A ++ K E A
Sbjct: 660 NVHGSDGLAASVFSVGDSVANDVL*KDLENTA 565
>TC205944
Length = 609
Score = 28.1 bits (61), Expect = 7.0
Identities = 11/38 (28%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Frame = +1
Query: 16 LWPHI-WTIKVRVICLWKTPEEMLESSHSSLKMILIDR 52
LW H WT+ + ++C+W ++ L S ++M+ R
Sbjct: 286 LWDHQ*WTLTLALVCVWMLSQQQLVSISRVVEMLFCAR 399
>TC205537 similar to GB|AAP37774.1|30725504|BT008415 At4g03260 {Arabidopsis
thaliana;} , partial (33%)
Length = 1678
Score = 28.1 bits (61), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = +3
Query: 211 RCYSELKVVNHGYSCSRCC 229
RC S + +NH YSCS+ C
Sbjct: 1200 RCCSHTEAINHVYSCSQKC 1256
>TC210340 similar to GB|AAM47357.1|21360483|AY113049 AT5g64160/MHJ24_14
{Arabidopsis thaliana;} , partial (28%)
Length = 595
Score = 28.1 bits (61), Expect = 7.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -3
Query: 313 GCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEEDNKQAVCVVEKVGL 369
GC CY + H CS+ + +F KR K D R E ++ +C EK GL
Sbjct: 305 GC-CYTLPHCCSEIVAVLQFRRKRRM-----QKEDPRQKEDSERGRRWICRPEKGGL 153
>TC214844 homologue to UP|Q9FUP4 (Q9FUP4) 60S ribosomal protein L10A
(Fragment), partial (38%)
Length = 619
Score = 27.7 bits (60), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +1
Query: 212 CYSELKVVNHGYSCSRCCRTMIMIFYFYRYRL 243
C +LK NHG+ S ++ ++F FYR L
Sbjct: 388 CQIQLKRQNHGHRVSYSGMSLPLVFLFYRLNL 483
>BE802991
Length = 229
Score = 27.7 bits (60), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -1
Query: 244 NVHVSDGVQSSVFILSDPEATHIIKKACEEFA 275
NVH SDG+ +SVF + D ++K E+ A
Sbjct: 193 NVHGSDGLATSVFSVGDSVKKDVVKTDVEDNA 98
>TC208453 similar to UP|O04033 (O04033) F7G19.16 protein, partial (62%)
Length = 1093
Score = 27.7 bits (60), Expect = 9.2
Identities = 23/81 (28%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
Frame = -2
Query: 16 LWPHIWT-IKVRVICLWKTPEEML---ESSHSSLKMILIDREAVKIEAYVCKEDPITKNI 71
LWPH+W ++VR++ + L ++S S+L +L R V + + + P ++
Sbjct: 840 LWPHLWCHVRVRLLSIHVWVHHRLTHYDTSSSNLGRML--RRHVAVWKGISR--PCNRHC 673
Query: 72 VPGGVYKFSIFQVTCNHGVNR 92
K IFQV H VN+
Sbjct: 672 SSWD*CKHFIFQVLTRHNVNQ 610
>TC216778 UP|O24431 (O24431) Calmodulin-like domain protein kinase isoenzyme
gamma , complete
Length = 2377
Score = 27.7 bits (60), Expect = 9.2
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Frame = +1
Query: 265 HIIKKACEEFAYASPQPLAAHFP-PEVEEK-LVGAE---VLFKVRNDVRRLYD-----GC 314
H+ +K A PQ + P P + K +VG +L K DV++LY G
Sbjct: 538 HLHEKHAASTAQTVPQNMPWKPPGPALSPKPVVGVRQDTILGKQFEDVKQLYTLGKELGR 717
Query: 315 FCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEEDNKQAVCVVE 365
+ V ++C+++ T +++ K S + SKSD +ED K+ + +++
Sbjct: 718 GQFGVTYLCTENSTGLQYACKSISKRKLASKSD------KEDIKREIQIMQ 852
>BM732647
Length = 432
Score = 27.7 bits (60), Expect = 9.2
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = +3
Query: 207 YPSCRCYSELKVVNHGYSCSRC 228
Y CRC+ + ++ GY CS C
Sbjct: 21 YELCRCFCHKQTIDMGYVCSVC 86
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,752,097
Number of Sequences: 63676
Number of extensions: 299657
Number of successful extensions: 1753
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of query: 388
length of database: 12,639,632
effective HSP length: 99
effective length of query: 289
effective length of database: 6,335,708
effective search space: 1831019612
effective search space used: 1831019612
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0060.3