TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.17
         (128 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232109 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (C...   201  6e-53
TC229825 similar to UP|Q9LHM6 (Q9LHM6) Pre-rRNA processing prote...    39  9e-04
TC218002 weakly similar to UP|Q7T2E6 (Q7T2E6) XPA binding protei...    38  0.001
TC232290 similar to GB|AAP37764.1|30725484|BT008405 At3g17040 {A...    30  0.23
BG154218 similar to GP|10177361|db cell cycle control crn (crook...    27  2.0
TC216244 similar to UP|Q949X7 (Q949X7) Diaminopimelate decarboxy...    27  2.0
TC231310 similar to UP|Q8LEI6 (Q8LEI6) Receptor-like protein kin...    27  2.0
TC205208 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase ...    27  2.6
TC206889                                                               25  7.5
TC227072 similar to UP|Q9XEE0 (Q9XEE0) Homoserine kinase  , part...    25  9.8
TC226304 similar to GB|AAN72000.1|25082773|BT001989 expressed pr...    25  9.8
BM085622 similar to GP|11875201|db P0458A05.23 {Oryza sativa (ja...    25  9.8

>TC232109 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked neck)
           protein-like, partial (30%)
          Length = 916

 Score =  201 bits (512), Expect = 6e-53
 Identities = 99/115 (86%), Positives = 105/115 (91%)
 Frame = +2

Query: 12  KFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKL 71
           KFSFA +WLLAAQFEIRQLNL+ A  ILG+AIGKAPKDKI KKYIEIELQLGNIDRCRKL
Sbjct: 197 KFSFAKIWLLAAQFEIRQLNLRAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKL 376

Query: 72  YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNI 126
           YEKYLEW+ ENCYAWSKYA LERSLSETDRAR+IFELAI+QPA DMPELLWK  I
Sbjct: 377 YEKYLEWSPENCYAWSKYAELERSLSETDRARAIFELAIAQPALDMPELLWKAYI 541


>TC229825 similar to UP|Q9LHM6 (Q9LHM6) Pre-rRNA processing protein RRP5,
           partial (10%)
          Length = 980

 Score = 38.5 bits (88), Expect = 9e-04
 Identities = 30/106 (28%), Positives = 51/106 (47%), Gaps = 4/106 (3%)
 Frame = +3

Query: 10  SQKFSFA-NMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIE---IELQLGNI 65
           ++KF  +  +WL   Q  ++Q N  G   ++  A    PK K +K + +   +E ++G  
Sbjct: 126 TKKFKHSCKVWLRRIQSLLKQ-NKDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGFP 302

Query: 66  DRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
           DR R ++EK L    +    WS Y   E    + D   ++FE A+S
Sbjct: 303 DRGRSMFEKILREYPKRTDLWSVYLDQEIQHKDEDIIHALFERAVS 440


>TC218002 weakly similar to UP|Q7T2E6 (Q7T2E6) XPA binding protein 2, partial
           (19%)
          Length = 1500

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 27/80 (33%), Positives = 42/80 (51%), Gaps = 5/80 (6%)
 Frame = +1

Query: 42  AIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWS---KYA*LERSLSE 98
           A+    K  + + YI    ++  + + R++YE+ +E  L +    +   KYA LE+SL E
Sbjct: 331 AVPNNEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGE 510

Query: 99  TDRARSIFELA--ISQPASD 116
            DRAR IF  A   + P SD
Sbjct: 511 IDRARGIFVFASQFADPRSD 570


>TC232290 similar to GB|AAP37764.1|30725484|BT008405 At3g17040 {Arabidopsis
           thaliana;} , partial (15%)
          Length = 843

 Score = 30.4 bits (67), Expect = 0.23
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 69  RKLYEKYLEWAL-ENCYAWSKYA*LERSLSETDRARSIFELA 109
           R++YEK  +    EN Y W  +A LE  +    RAR +F+ A
Sbjct: 672 REIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAA 797


>BG154218 similar to GP|10177361|db cell cycle control crn (crooked neck)
           protein-like {Arabidopsis thaliana}, partial (16%)
          Length = 339

 Score = 27.3 bits (59), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 85  AWSKYA*LERSLSETDRARSIFELAISQPASD 116
           AW +YA  E    E  R+R+++E A+ + + D
Sbjct: 33  AWIRYAKFEMKNGEVARSRNVYERAVDKLSDD 128


>TC216244 similar to UP|Q949X7 (Q949X7) Diaminopimelate decarboxylase,
           partial (58%)
          Length = 1040

 Score = 27.3 bits (59), Expect = 2.0
 Identities = 19/46 (41%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
 Frame = +2

Query: 4   VSTLDTSQKFSFAN---MWLLAAQFEI-RQLNLKGAHVILGSAIGK 45
           V+T + + KF   N    W L A  E+  +L L GAH  LGS I K
Sbjct: 89  VATGNKNSKFGIRNEKLQWFLDAVKELPNELKLVGAHCHLGSTITK 226


>TC231310 similar to UP|Q8LEI6 (Q8LEI6) Receptor-like protein kinase, partial
           (7%)
          Length = 498

 Score = 27.3 bits (59), Expect = 2.0
 Identities = 19/52 (36%), Positives = 24/52 (45%)
 Frame = -3

Query: 72  YEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
           Y KYL W   +  +W+    LE      D A S+ EL I    S  PE +WK
Sbjct: 181 YSKYLPWRFGSINSWN----LE------DSAASLIELVI----SCFPERIWK 68


>TC205208 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase family 7
           member A1  , partial (95%)
          Length = 1900

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 80  LENCYAWSKYA*LERSLSETDRARSIFELAIS 111
           L++C++   YA + R ++ +DR  S F LAI+
Sbjct: 208 LQSCFSHLSYALIVRRINRSDRRTSGFPLAIN 113


>TC206889 
          Length = 1417

 Score = 25.4 bits (54), Expect = 7.5
 Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
 Frame = +3

Query: 39  LGSAIGKAPK---DKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
           LG   G+  K   D  L++Y+E   +  N+D+ +K+ E+ L+W
Sbjct: 291 LGPLSGRRLKYCTDACLRRYLEA--RNWNVDKAKKMLEETLKW 413


>TC227072 similar to UP|Q9XEE0 (Q9XEE0) Homoserine kinase  , partial (76%)
          Length = 1872

 Score = 25.0 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 29   QLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNID 66
            Q+++ G H+     +G+ P  +I K  IEIE +  N++
Sbjct: 1224 QIHVTGQHLECYEQVGRNPVLEIYKPLIEIEKRRFNLE 1111


>TC226304 similar to GB|AAN72000.1|25082773|BT001989 expressed protein
           {Arabidopsis thaliana;} , partial (87%)
          Length = 1345

 Score = 25.0 bits (53), Expect = 9.8
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 51  ILKKYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIF-ELA 109
           I K+ + +    GNI        KYLE  + +  AW + A +  SL    +A   + EL 
Sbjct: 504 IHKRRVAMAKAQGNISVAIDWLNKYLETFMADHEAWRELAEIYVSLQMYKQAAFCYEELI 683

Query: 110 ISQPASDMPELLWKVNIIY 128
           ++QP   +  L +  +++Y
Sbjct: 684 LTQPTVPLFHLAY-ADVLY 737


>BM085622 similar to GP|11875201|db P0458A05.23 {Oryza sativa (japonica
           cultivar-group)}, partial (22%)
          Length = 429

 Score = 25.0 bits (53), Expect = 9.8
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -2

Query: 9   TSQKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNID 66
           T QKF + ++  L  QF+++  NL    +I  S+  KA   K+L + + + + +GN D
Sbjct: 266 TFQKFQWFSLLPLLKQFQVQIYNL----II*PSSRSKAL--KLLSRDLNVRILVGNQD 111


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.325    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,687,862
Number of Sequences: 63676
Number of extensions: 62625
Number of successful extensions: 325
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of query: 128
length of database: 12,639,632
effective HSP length: 86
effective length of query: 42
effective length of database: 7,163,496
effective search space: 300866832
effective search space used: 300866832
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)