BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.15
(372 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC234682 UP|Q8L1Y3 (Q8L1Y3) Transcriptional regulator SrnR, part... 39 0.003
TC228710 similar to UP|Q6NQ98 (Q6NQ98) At5g58020, partial (41%) 37 0.019
TC208362 weakly similar to UP|O64835 (O64835) Expressed protein ... 37 0.019
TC208361 weakly similar to UP|O64835 (O64835) Expressed protein ... 36 0.032
TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {A... 35 0.042
TC213480 35 0.054
AW433075 34 0.12
TC233634 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport... 33 0.21
TC206712 similar to GB|AAT41855.1|48310625|BT014872 At2g19340 {A... 33 0.21
TC222219 33 0.27
BI893993 homologue to GP|3493647|gb|A transcription activator {P... 32 0.35
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragme... 32 0.35
TC219513 weakly similar to UP|LECT_SOLTU (Q9S8M0) Chitin-binding... 32 0.35
TC204984 PIR|T06396|T06396 isoprenylated protein - soybean (frag... 32 0.46
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 32 0.46
TC233975 weakly similar to UP|Q9FGH8 (Q9FGH8) Similarity to sort... 32 0.46
TC221324 32 0.60
TC214758 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-pho... 32 0.60
TC234341 similar to UP|Q944A2 (Q944A2) At1g20220/T20H2_3, partia... 32 0.60
TC230247 weakly similar to GB|AAP88326.1|32815835|BT009692 At1g6... 31 0.79
>TC234682 UP|Q8L1Y3 (Q8L1Y3) Transcriptional regulator SrnR, partial (11%)
Length = 587
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/137 (21%), Positives = 59/137 (42%), Gaps = 4/137 (2%)
Frame = +2
Query: 57 TRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLEN-DGGFHNQPPPR 115
T+ G+ PP V +P+Q S + +Q H P+ + + F+ PP
Sbjct: 44 TKGGEPVSAPPYKTPKPLPVIVHSPAQAPSSAHKARQFHHAPEPPISSPESPFNKDHPPA 223
Query: 116 TSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPK 175
+S ++F+ + + +P P ++S S + Q +N + T +++ P P
Sbjct: 224 SSPSTTFYKHHHTRNTVTSPA--PASSHSISPSTSKHQDGSNPPLPLPTSRQRHHAPPPM 397
Query: 176 T--HKTTPTGYP-QNPI 189
+P+G P Q+P+
Sbjct: 398 NTGSSVSPSGLPIQSPV 448
>TC228710 similar to UP|Q6NQ98 (Q6NQ98) At5g58020, partial (41%)
Length = 846
Score = 36.6 bits (83), Expect = 0.019
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Frame = -2
Query: 196 IYVQVAVAGLGAHCGVVCDTAAEAGSEDEKEDR-------WCDSG--------------- 233
++V+VAVAGLG+ V A EAG+E E +R + G
Sbjct: 389 VHVEVAVAGLGSGGAAVSAAAKEAGAEREGGERGELGKRGFVGEGFAIEGEVEGLV*LRE 210
Query: 234 NRAFQVGEGLIAGDGFVTELLEVQRLDEDLE----GKERLGRSGQRWLGLAVHRW 284
R F++G+G + G G EV+ + +DLE ER R L + RW
Sbjct: 209 KRVFEIGKGFVVGCGLKGN-SEVR*VHQDLERFCIHLERFSRVCDAQLEIEFQRW 48
>TC208362 weakly similar to UP|O64835 (O64835) Expressed protein
(At2g23670/F26B6.32), partial (72%)
Length = 805
Score = 36.6 bits (83), Expect = 0.019
Identities = 37/149 (24%), Positives = 51/149 (33%), Gaps = 16/149 (10%)
Frame = -2
Query: 77 EVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPR--------SVS 128
E++ P +QP+ K PL N PPP++ S P
Sbjct: 501 ELQAPKYRSPPPLQPKSQKPPLPPPLPPAPTPQNSPPPQSPSPLPLSPSPPPPTPSPPSP 322
Query: 129 HPSSHNPTNKPLQQRTLSLSLP--------QRQALTNACPKMATQKRKQQTPTPKTHKTT 180
PS P P Q LS S P + T CP T TP+ + KT
Sbjct: 321 APSPPPPIPYPQPQIPLSQSPPLPPPPSSDSAVSRTRECPAPRTPLPSPSTPSSPSEKTA 142
Query: 181 PTGYPQNPIKTYPLRIYVQVAVAGLGAHC 209
P++ + PLR+ A +HC
Sbjct: 141 TASAPRSEV---PLRV*RHAACTETASHC 64
>TC208361 weakly similar to UP|O64835 (O64835) Expressed protein
(At2g23670/F26B6.32), partial (72%)
Length = 636
Score = 35.8 bits (81), Expect = 0.032
Identities = 36/142 (25%), Positives = 50/142 (34%), Gaps = 9/142 (6%)
Frame = -2
Query: 77 EVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVSH-PSSHNP 135
E+++P +QP+ K PL N P P + S P PS P
Sbjct: 491 ELQDPKYRSPLPLQPKSQKPPLPPPLPPAPTPQNSPSPLSPSPLPLSPSPPPPTPSPPPP 312
Query: 136 TNKPLQQRTLSLSLP--------QRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQN 187
P Q LS S P + T CP T TP+ + KT P++
Sbjct: 311 IPYPQPQIPLSQSPPLPPPPSSDSSVSRTRECPAPRTPLPSPSTPSSPSEKTATASAPRS 132
Query: 188 PIKTYPLRIYVQVAVAGLGAHC 209
+ PLR+ A +HC
Sbjct: 131 EV---PLRV*RHAACTETASHC 75
>TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {Arabidopsis
thaliana;} , partial (68%)
Length = 1307
Score = 35.4 bits (80), Expect = 0.042
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 113 PPRTSSFSSFFPRSVSHP--SSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQ 170
PP+ SSFSS P + S P S PT +L L+ P L +A P T
Sbjct: 479 PPQCSSFSSPLPFNPSTPPKPSAPPTTSTASSASLRLAFPSAPPLVSAMPPTPTNAPPPP 658
Query: 171 TPTPKTHKTTPTGYPQNP 188
+P P T P+ +P
Sbjct: 659 SPPPSA--TPPSSTSPSP 706
>TC213480
Length = 420
Score = 35.0 bits (79), Expect = 0.054
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 79 RNP---SQPQKSRIQPQQHKHCK-SSPLENDGGFHNQPPPRTSSFSSFFPRSVSHPSSHN 134
+NP S P + +QP ++C+ + + F +PP S F+ PRS + PS
Sbjct: 71 KNPKT*SNPCQWLLQPMAPQNCRFRTSKTSTPSFSRRPPNAASRFTLSSPRSSNPPSPTT 250
Query: 135 PTNKPLQQRTLS 146
PT+ PL +TLS
Sbjct: 251 PTS-PLTSKTLS 283
>AW433075
Length = 446
Score = 33.9 bits (76), Expect = 0.12
Identities = 23/48 (47%), Positives = 29/48 (59%)
Frame = -1
Query: 196 IYVQVAVAGLGAHCGVVCDTAAEAGSEDEKEDRWCDSGNRAFQVGEGL 243
++V+VAV GLGA V T EAG+E E +R + R F VGEGL
Sbjct: 428 VHVEVAVTGLGACGTAVSATTREAGAEGEGGERG-ELRERGF-VGEGL 291
Score = 28.9 bits (63), Expect = 3.9
Identities = 26/85 (30%), Positives = 37/85 (42%), Gaps = 6/85 (7%)
Frame = +2
Query: 70 QAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVS- 128
Q++ PA + P +S I PQ SP+ H++P S S P +
Sbjct: 35 QSWFPAEIIYLLGFPAESSILPQ-------SPIP-----HHKP*KIFSDESKIAPNPGAV 178
Query: 129 -----HPSSHNPTNKPLQQRTLSLS 148
PS+HN T P + +TLSLS
Sbjct: 179 TGPRNFPSTHNQTRNPFRSQTLSLS 253
>TC233634 similar to UP|Q8LKH0 (Q8LKH0) PIN1-like auxin transport protein,
partial (41%)
Length = 817
Score = 33.1 bits (74), Expect = 0.21
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Frame = -3
Query: 75 AAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVSHPSSHN 134
A+E PS +S + + +S ++ H+QPPP + + + SHP+
Sbjct: 785 ASESTTPSWGHESA*RKSPTANSPTSSPSHEASRHHQPPPPSEA-------APSHPTK*Y 627
Query: 135 PT------NKPLQQRTLSL---SLPQRQALTN-ACPKMATQKRKQQT-PTPKTHKTTPT- 182
P +KP Q T L S P Q T C K T+ + + P+ H+T+P+
Sbjct: 626 PNQP*MK*SKPQYQETAPL*EASRPYTQTKTA*GCTK*YTEAPQSEP*VFPRHHRTSPSA 447
Query: 183 -GYP 185
GYP
Sbjct: 446 MGYP 435
>TC206712 similar to GB|AAT41855.1|48310625|BT014872 At2g19340 {Arabidopsis
thaliana;} , partial (74%)
Length = 741
Score = 33.1 bits (74), Expect = 0.21
Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 13/132 (9%)
Frame = +2
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQ-KSRIQPQQHKHCKSSPLENDGGFHNQPPP 114
P R+ + PP +A P P+ P +S S+PL + F P P
Sbjct: 74 PNRIPRCPLPPPPAEATPP------PAHPSIRSSTSSASSPSASSAPLASASSFPPSPSP 235
Query: 115 RTSSFSSFFPRSVSHPSSHNPT------------NKPLQQRTLSLSLPQRQALTNACPKM 162
PR+ S PSS +PT + P L P A +++CP
Sbjct: 236 ---------PRTPSSPSSSSPTSWSSPALFTTSSSSPPASAPLRTPTPAPSAPSSSCPAA 388
Query: 163 ATQKRKQQTPTP 174
+T + P
Sbjct: 389 STASTSSRASPP 424
>TC222219
Length = 800
Score = 32.7 bits (73), Expect = 0.27
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -2
Query: 271 RSGQRWLGLAVHRWLVRKRWGKRKNRKGKGKESRKRKRVGSPT 313
R GQRW H WL + WG R+ R+ K KE + +R SP+
Sbjct: 178 RRGQRWGRKQGH*WLGEQIWGGRERRERK-KEKK*HRRRKSPS 53
>BI893993 homologue to GP|3493647|gb|A transcription activator {Pimpinella
brachycarpa}, partial (21%)
Length = 425
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +3
Query: 329 WTVYGHYGVPLLFFAFFIPATAVGLVINLG-------TSHWDNHLFNFFIH 372
W + +Y LLFF+ F A +GL I LG TSH H F F++H
Sbjct: 117 WLIDNYYNFKLLFFSPFFLAAFLGLQILLGEGSILVETSHTRKHSF-FWVH 266
>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragment) , partial
(96%)
Length = 2604
Score = 32.3 bits (72), Expect = 0.35
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 9/139 (6%)
Frame = +1
Query: 59 VGKFYFGPPVDQAYTPAAEVRNPSQPQKS----RIQPQQHKHCKSSPL--ENDGGFHNQP 112
VG F P Y+P++ +PS P S P + +SP + G+
Sbjct: 1069 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1248
Query: 113 PPRTSSFSSFFPRSVSH---PSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
P + + S+ P S S+ S++PT+ + S S P A + P +
Sbjct: 1249 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPAYSPTSPAYSPTSPAY 1425
Query: 170 QTPTPKTHKTTPTGYPQNP 188
+P T+P+ P +P
Sbjct: 1426 SPTSPSYSPTSPSYSPTSP 1482
>TC219513 weakly similar to UP|LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1
precursor (PL-I), partial (13%)
Length = 496
Score = 32.3 bits (72), Expect = 0.35
Identities = 23/90 (25%), Positives = 35/90 (38%)
Frame = +1
Query: 114 PRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPT 173
PR + SSF + + +SH+PT+ PL P + P+ +PT
Sbjct: 130 PRNTKPSSFNRTTTTPTTSHSPTSPPLPP-------PPPPSPRRRRPRPTPSPNSPPSPT 288
Query: 174 PKTHKTTPTGYPQNPIKTYPLRIYVQVAVA 203
P + P+ P P P V+VA
Sbjct: 289 PPSPTKIPSSSPPAPASAPPRSSTAPVSVA 378
>TC204984 PIR|T06396|T06396 isoprenylated protein - soybean (fragment)
{Glycine max;} , complete
Length = 1484
Score = 32.0 bits (71), Expect = 0.46
Identities = 24/93 (25%), Positives = 44/93 (46%), Gaps = 15/93 (16%)
Frame = +3
Query: 108 FHNQPPPRTSSFSSFFPRSVS-HPS--------SHNPTNKPLQQRTLSLS----LPQRQA 154
+ N P PR S P+ S PS + +P P ++RT++ P+++
Sbjct: 711 YWNCPSPRPRSLKQTLPKLRSPRPSPRKRRTVAARSPRPSPRKRRTVAARNPRPSPRKRR 890
Query: 155 LTNACPKMATQKRKQQTPT--PKTHKTTPTGYP 185
+ PK +KRK ++P+ P++ +T+P P
Sbjct: 891 MVGRSPKGMLRKRKPRSPSPGPRSPRTSPRQLP 989
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 32.0 bits (71), Expect = 0.46
Identities = 26/83 (31%), Positives = 32/83 (38%)
Frame = +1
Query: 112 PPPRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQT 171
PPP T+S S P S S N + P T S P R + P A +
Sbjct: 508 PPPTTTS-S*ALPTSWI---SRNAPSIPRSSSTPSNPTPGRTSPACPTPSAAPAPWASSS 675
Query: 172 PTPKTHKTTPTGYPQNPIKTYPL 194
P P T + P NPI + PL
Sbjct: 676 PAPSTGSSPENSNPTNPISSSPL 744
>TC233975 weakly similar to UP|Q9FGH8 (Q9FGH8) Similarity to sorting nexin,
partial (15%)
Length = 634
Score = 32.0 bits (71), Expect = 0.46
Identities = 19/48 (39%), Positives = 25/48 (51%)
Frame = -2
Query: 266 KERLGRSGQRWLGLAVHRWLVRKRWGKRKNRKGKGKESRKRKRVGSPT 313
+ R+GR G RWLG R RW +R+ R SR+R+R G T
Sbjct: 408 RSRIGRRGIRWLG--------RDRWNRRR*R------SRRRRREGRGT 307
>TC221324
Length = 620
Score = 31.6 bits (70), Expect = 0.60
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGY 184
RS S P H PT T S SLP LT A P + + P T + PT
Sbjct: 294 RSHSKPRGHGPTRLAKTPSTASPSLP----LTPAAPPRTSPPPRSVPPRQTTVGSIPTPQ 127
Query: 185 PQNP 188
P+ P
Sbjct: 126 PELP 115
>TC214758 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-phosphate
isomerase (Phosphoriboisomerase) , partial (79%)
Length = 836
Score = 31.6 bits (70), Expect = 0.60
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 81 PSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSS 118
P Q Q R P HK+ ++SPL D ++ PPR S
Sbjct: 301 PGQAQGHRRNPHLHKNPRTSPLPRDPPLRSRRPPRHRS 414
>TC234341 similar to UP|Q944A2 (Q944A2) At1g20220/T20H2_3, partial (10%)
Length = 621
Score = 31.6 bits (70), Expect = 0.60
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Frame = +3
Query: 113 PPRTSSFSSF-----FPRS--------VSHP-SSHNPTNKPLQQRTLSLSLPQRQALTNA 158
PPR FSSF FPRS +S P +S + +QR+ S S P A +
Sbjct: 63 PPRPPPFSSFSSPSEFPRSSLATTTSSISGPRTSSRRAWRGTRQRSTSWSDPSATARSPP 242
Query: 159 CPKMATQKRKQQTPTPKTHKTTPT-GYPQNPIKT 191
P A K +PTP + KT+P+ P P T
Sbjct: 243 SPTPAWSK--P*SPTPPSRKTSPSLASPWTPATT 338
>TC230247 weakly similar to GB|AAP88326.1|32815835|BT009692 At1g61870
{Arabidopsis thaliana;} , partial (56%)
Length = 1291
Score = 31.2 bits (69), Expect = 0.79
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +1
Query: 112 PPPRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALT-NACPKMATQKRK-- 168
PP + S+ P + PSS PT P + ++S P + T N+ P ++ +
Sbjct: 184 PPSPLTLTSTAVPSPLPSPSSPPPTTSPASAPSSTISKPAPTSATKNSSPTPSSSTARPI 363
Query: 169 -QQTPTPKTHKTTPTGYPQNP 188
TP+ + KT+P P P
Sbjct: 364 CSITPSAPSPKTSPPLAPSKP 426
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,003,827
Number of Sequences: 63676
Number of extensions: 356895
Number of successful extensions: 3283
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 3188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3261
length of query: 372
length of database: 12,639,632
effective HSP length: 99
effective length of query: 273
effective length of database: 6,335,708
effective search space: 1729648284
effective search space used: 1729648284
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0060.15