BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058b.2
(1371 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 585 e-167
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 581 e-166
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 230 3e-60
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 213 4e-55
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 213 5e-55
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 201 2e-51
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 196 4e-50
BI427153 182 9e-46
CO983154 181 2e-45
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 154 2e-43
CO981879 112 4e-43
BU764568 120 2e-40
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 154 3e-37
BM086359 152 7e-37
BM307983 150 3e-36
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 150 4e-36
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 149 1e-35
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 102 8e-34
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 87 1e-32
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 136 7e-32
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 585 bits (1508), Expect = e-167
Identities = 374/1148 (32%), Positives = 588/1148 (50%), Gaps = 22/1148 (1%)
Frame = +1
Query: 241 QCYSCGELGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKRTVVMSDDEFA 300
+C+ CG+ GH K C + H H QS+ +R
Sbjct: 1507 RCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSR---------------------------- 1602
Query: 301 RYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATNHMTGDSGIFLSFSS 360
+ P + V T +S W +DSG + HMTG L+
Sbjct: 1603 -------KKMMWVPKHKAVSLVVH---TSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEP 1752
Query: 361 SSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTF 420
S S VT DGS ++ G G ++ VL + NL+SIS++ +V F
Sbjct: 1753 CST-SYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDE-GFNVNF 1926
Query: 421 FPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQL-HCRLGHPSLG 479
C+ + ++ ++ R D YL + S+ +S ++ H R GH L
Sbjct: 1927 TKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLR 2106
Query: 480 VLRKLC--------PQLESLSNFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGP 531
++K+ P L+ C CQ K + + ++ + ++H D+ GP
Sbjct: 2107 GMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGP 2286
Query: 532 CPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDN 591
V S G +Y VDD+SR TW+ ++ +SE F +F ++ + +C I +RSD+
Sbjct: 2287 MQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDH 2466
Query: 592 AKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWA 651
+E+ ++ F F G+ H+ S +TPQQNG+ ERKNR L E A+ ++ ++P WA
Sbjct: 2467 GREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWA 2646
Query: 652 DAVLTAAYLINRMPSTVLNGVIPYSV---LFPSCSLFPLPPKVFGCTCFVLDVRPQVTKL 708
+A+ TA Y+ NR+ Y + PS F +FG C++L R Q K+
Sbjct: 2647 EAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHF----HIFGSPCYILADREQRRKM 2814
Query: 709 DPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVCESEDTF 768
DPKS +FLGYS + YR F+ + S +V +D S P+ E +
Sbjct: 2815 DPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVV-VDDLS-----PARKKDVEED--- 2967
Query: 769 LTYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPSI------PLVSSDPHDN 822
+ TS + E + S +S+ PD +S I L+ DP+
Sbjct: 2968 ---VRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPN-- 3132
Query: 823 LDLPIALRKGKRTCSYPISSYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAM 882
+G T S + + SN FV+ ++ PK++ +AL+ W AM
Sbjct: 3133 --------RGVTTRSREVE--IVSN------SCFVSKIE----PKNVKEALTDEFWINAM 3252
Query: 883 EEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVD 942
+EE+ + N W+LVP P G V+G KW++ K N +G + R KARLVA+GY Q GVD
Sbjct: 3253 QEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVD 3432
Query: 943 YTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGEC 1002
+ +TF+PVA+L S+R+L+ +A + L+Q+DVK+AFL+G L +EVY+EQP GF
Sbjct: 3433 FDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHP 3612
Query: 1003 GKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDD 1062
V RLKK+LYGLKQ+PR+W+ R ++ + + G R+ D T+F KQ + ++ +YVDD
Sbjct: 3613 DHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDD 3792
Query: 1063 IVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAET 1122
IV G +E + + +Q +F+ +G L YFLG++V ++ I +SQ +Y +++ +
Sbjct: 3793 IVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKF 3972
Query: 1123 GLMGSKPCETPMEPGMKLTAEGVPFS-DPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFM 1181
G+ + TP +KL+ + S D YR ++G L YLT +RPDI + V V +++
Sbjct: 3973 GMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQ 4152
Query: 1182 SSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVF 1241
++P +H + RI+KY+ GI+Y + + + DADWAGS DRKST+G C +
Sbjct: 4153 ANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFY 4332
Query: 1242 LGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC---MWVGQILSEMGIERISPMKLWCDN 1298
LG NLISW SKKQN V+ S+AEAEY A A ++C +W+ Q+L E +E+ M L+CDN
Sbjct: 4333 LGNNLISWFSKKQNCVSLSTAEAEYIA-AGSSCSQLVWMKQMLKEYNVEQ-DVMTLYCDN 4506
Query: 1299 QAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRND 1358
+A++IS NPV H RTKHI++ H+IR+ + +I+ +V T +Q+AD+FTKAL+ + +
Sbjct: 4507 MSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFE 4686
Query: 1359 FICNKLGM 1366
+ KLG+
Sbjct: 4687 KLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 581 bits (1497), Expect = e-166
Identities = 376/1160 (32%), Positives = 594/1160 (50%), Gaps = 17/1160 (1%)
Frame = +1
Query: 224 RGGRGGARGRGGRFGQIQCYSCGELGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDVI 283
R G + + + + +C+ CG+ GH K C + H H QS+ S +
Sbjct: 1459 RSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSS--------SSGRKM 1614
Query: 284 QTQPEKRTVVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDSG 343
P+ + V + R +S W +DSG
Sbjct: 1615 MWVPKHKIVSLVVHTSLR------------------------------ASAKEDWYLDSG 1704
Query: 344 ATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCN 403
+ HMTG ++ S S VT DGS ++ G G ++ VL + N
Sbjct: 1705 CSRHMTGVKEFLVNIEPCST-SYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTAN 1881
Query: 404 LLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYL-LDEGVSKASTAYRTS 462
L+SIS++ +V F C+ + ++ ++ R D YL + S +ST +
Sbjct: 1882 LISISQLCDE-GFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSK 2058
Query: 463 SVSPFQLHCRLGHPSLGVLRKLC--------PQLESLSNFSCESCQFAKHHRSVYLPRLN 514
H R GH L ++K+ P L+ C CQ K + + +
Sbjct: 2059 EDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQH 2238
Query: 515 KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCA 574
+ + ++H D+ GP V S G +Y VDD+SR TW+ ++ +S+ F +F
Sbjct: 2239 QTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSL 2418
Query: 575 EIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLME 634
++ + +C I +RSD+ +E+ ++ F F G+ H+ S +TPQQNG+ ERKNR L E
Sbjct: 2419 RLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQE 2598
Query: 635 VAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLF---PSCSLFPLPPKV 691
A+ ++ ++P WA+A+ TA Y+ NR+ Y + P+ F +
Sbjct: 2599 AARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHF----HI 2766
Query: 692 FGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDCSF 751
FG C++L R Q K+DPKS +FLGYS + YR F+ + S +V +D +
Sbjct: 2767 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVV-DDLT- 2940
Query: 752 SGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPS 811
P+ E + + TS T + E + S + + PD + PS
Sbjct: 2941 ----PARKKDVEED------VRTSGDNVADTAKSAENAENSDSATDEPNINQPDKR--PS 3084
Query: 812 IPLVSSDPHDNLDLPIA-LRKGKRTCSYPISSYVTSNKLSPASKSFVAALDSVSVPKSLS 870
I + P + L I +G T S I + SN FV+ ++ PK++
Sbjct: 3085 IRIQKMHPKE---LIIGDPNRGVTTRSREIE--IVSNSC------FVSKIE----PKNVK 3219
Query: 871 DALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARL 930
+AL+ W AM+EE+ + N W+LVP P G V+G KW++ K N +G + R KARL
Sbjct: 3220 EALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARL 3399
Query: 931 VAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYM 990
VA+GY Q GVD+ +TF+PVA+L S+R+L+ +A + L+Q+DVK+AFL+G L +E Y+
Sbjct: 3400 VAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYV 3579
Query: 991 EQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTN 1050
EQP GFV V RLKK+LYGLKQ+PR+W+ R ++ + + G R+ D T+F KQ
Sbjct: 3580 EQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDA 3759
Query: 1051 KGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMIS 1110
+ ++ +YVDDIV G +E + + +Q +F+ +G L YFLG++V ++ I +S
Sbjct: 3760 ENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLS 3939
Query: 1111 QRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVPFS-DPQQYRRLVGKLNYLTVTRPD 1169
Q KY +++ + G+ + TP +KL+ + S D YR ++G L YLT +RPD
Sbjct: 3940 QSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPD 4119
Query: 1170 IAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSP 1229
I + V V +++ ++P +H + RI+KY+ GI+Y + + DADWAGS
Sbjct: 4120 ITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSA 4299
Query: 1230 MDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC---MWVGQILSEMGI 1286
DRKST+G C +LG NLISW SKKQN V+ S+AEAEY A A ++C +W+ Q+L E +
Sbjct: 4300 DDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIA-AGSSCSQLVWMKQMLKEYNV 4476
Query: 1287 ERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLAD 1346
E+ M L+CDN +A++IS NPV H RTKHI++ H+IR+ + +I+ +V T +Q+AD
Sbjct: 4477 EQ-DVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIAD 4653
Query: 1347 VFTKALNGVRNDFICNKLGM 1366
+FTKAL+ + + + KLG+
Sbjct: 4654 IFTKALDANQFEKLRGKLGI 4713
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 230 bits (587), Expect = 3e-60
Identities = 129/280 (46%), Positives = 173/280 (61%)
Frame = +2
Query: 367 VTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCV 426
+TLADGS V G G +P S+L ++SV+++ P N+ S+S++TR CSVTF +S V
Sbjct: 20 ITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFV 199
Query: 427 FQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQLHCRLGHPSLGVLRKLCP 486
Q+ T IG G ES GLY L +S +A SP LH RLGHP L L+ + P
Sbjct: 200 IQECGTGWTIGVGIESHGLYYLKPNLSWVCSAV----TSPKLLHERLGHPHLSKLKIMVP 367
Query: 487 QLESLSNFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
LE + + CESCQ KH RS + R S F ++H D+WGP V+S + Y+YFVTF
Sbjct: 368 SLEKIKDLFCESCQLGKHVRSSXR-HVESRVDSPFLVIHXDIWGPNRVSS-MSYRYFVTF 541
Query: 547 VDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDK 606
+D++S+ T ++LMK RSE+ + F +I+TQF I ILRSDNAKEYFS+ F
Sbjct: 542 IDEFSQCTRVFLMKERSEILS-FLTSVNKIKTQFGKTIKILRSDNAKEYFSSVISPFXSA 718
Query: 607 HGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVP 646
G++HQ SC TPQQN +AERKNRHL+E A+ L+ P
Sbjct: 719 QGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHANEP 838
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 213 bits (543), Expect = 4e-55
Identities = 96/133 (72%), Positives = 114/133 (85%)
Frame = -2
Query: 898 VPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR 957
VPLP GK VGC+WVYT KV P G + RLKARLVAKGY Q YG+DY DTFSPVAKL++VR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 958 ILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQ 1017
+ +++AA HWPL QLD+KNAFLHGDL++++YMEQPPGFVAQGE G VC+L +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1018 SPRSWFGRFSDVV 1030
SPR+WFG+FS VV
Sbjct: 46 SPRAWFGKFSHVV 8
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 213 bits (542), Expect = 5e-55
Identities = 99/161 (61%), Positives = 123/161 (75%), Gaps = 2/161 (1%)
Frame = +2
Query: 1213 GHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQT 1272
G+ ++ + DADWAG PMDR+ST+GYCVF+GGNL+SWKSKKQ VVARSSAEAEYR+MA
Sbjct: 5 GNTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMV 184
Query: 1273 TC--MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQ 1330
TC MW+ Q L E+ MKL+CDNQAALHI+SNPVFHERTKHIE+DCHFIREKL
Sbjct: 185 TCELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLS 364
Query: 1331 NLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMINIYA 1371
I T ++ + DQ D+ TK+L G + +C+KLG ++YA
Sbjct: 365 KEIVTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYA 487
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 201 bits (511), Expect = 2e-51
Identities = 106/179 (59%), Positives = 129/179 (71%), Gaps = 1/179 (0%)
Frame = +1
Query: 921 GSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFL 980
G++ + KARLVAK Y Q YG DYT TFSPVAK++ V +L S+A HWPLF LD KNAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 981 HGDLQDEVYMEQPPGFVAQGECGK-VCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSE 1039
HG L++EVYMEQP GFVAQGE VC+L +S YGLKQSPR+W + + + E
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYD--SHE 381
Query: 1040 SDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGI 1098
+DH+VF+ + +GCI L+VYVDDI ITGSD GI LK L +FQTKDLG L+YFLGI
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 196 bits (499), Expect = 4e-50
Identities = 86/134 (64%), Positives = 110/134 (81%)
Frame = +3
Query: 860 LDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNP 919
L S++VP ++ +AL H GWRQAM +EM ALE+N TW+LVPLP GK VGC+WVYT KV P
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 920 DGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAF 979
+G + RLKARLVAKGY Q YG++Y DTFSPV L++VR+ +++AA HWPL QLD+KNAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 980 LHGDLQDEVYMEQP 993
LHGDL++++YMEQP
Sbjct: 363 LHGDLEEDIYMEQP 404
>BI427153
Length = 422
Score = 182 bits (462), Expect = 9e-46
Identities = 86/140 (61%), Positives = 106/140 (75%)
Frame = +1
Query: 611 HQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLN 670
HQS+C TPQQNG+AERKN HL+E A++LM VP W DAVLTA +LINRMPS+ L
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 671 GVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCF 730
IP+S++FP+ LF + PKVFGCTCFV D+ P + KL +S+KCVFLGYSR QKGY C+
Sbjct: 181 NQIPHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCY 360
Query: 731 SPALGRYLVSADVTFFEDCS 750
P + RY +SA+VTFFED S
Sbjct: 361 FPNMRRYYMSANVTFFEDTS 420
>CO983154
Length = 568
Score = 181 bits (459), Expect = 2e-45
Identities = 84/134 (62%), Positives = 104/134 (76%)
Frame = +3
Query: 618 TPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSV 677
TPQQNG+AERKNRHL+E A++LM + VP W DAVLT+ +LINRMPS+ L IP+S+
Sbjct: 6 TPQQNGIAERKNRHLLETARSLMLNLNVPIHHWGDAVLTSCFLINRMPSSSLENQIPHSL 185
Query: 678 LFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRY 737
+FP LF + PKVFGCTCFV D+ P + KL +S+KCVFLGYSR QKGY+C+SP + RY
Sbjct: 186 VFPHDPLFHVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTMRRY 365
Query: 738 LVSADVTFFEDCSF 751
+SADVTFFED F
Sbjct: 366 YMSADVTFFEDTPF 407
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 154 bits (390), Expect(2) = 2e-43
Identities = 73/109 (66%), Positives = 86/109 (77%), Gaps = 2/109 (1%)
Frame = +2
Query: 1222 DADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC--MWVGQ 1279
DA+WA SP+DR ST GYCV +G NL+ WKS K NVVARSSAEAEY+AM TC +W+ Q
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 1280 ILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKL 1328
+L E+ MKL CDNQAALHI+SNPVFHERTKHIE+DCHF+REK+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 41.2 bits (95), Expect(2) = 2e-43
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 1337 YVRTGDQLADVFTKALNGVRNDFICNKLGMINIYA 1371
+V + DQLA++FTK+L G R IC+KLG +YA
Sbjct: 360 FVSSNDQLANIFTKSLRGPRIQNICSKLGAFELYA 464
>CO981879
Length = 576
Score = 112 bits (279), Expect(2) = 4e-43
Identities = 54/97 (55%), Positives = 68/97 (69%)
Frame = -1
Query: 567 TIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAE 626
+IF F I+TQF I + RSDN +EYF+ ++G+IHQSSC+ TPQQNGVAE
Sbjct: 573 SIFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAE 394
Query: 627 RKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINR 663
RKNRHL EVA+AL+FQ K PK W +A+LT YL N+
Sbjct: 393 RKNRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283
Score = 83.2 bits (204), Expect(2) = 4e-43
Identities = 45/93 (48%), Positives = 56/93 (59%), Gaps = 4/93 (4%)
Frame = -2
Query: 663 RMPSTVLNGVIPYSVL---FPSCSLF-PLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFL 718
RMPS +LN P V FP+ L LP K+FGCT FV P KL+P++ KCVF+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105
Query: 719 GYSRTQKGYRCFSPALGRYLVSADVTFFEDCSF 751
GY+ QKGY+CF P + V+ DVTFFE F
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDVTFFEKTPF 6
>BU764568
Length = 420
Score = 120 bits (302), Expect(2) = 2e-40
Identities = 59/85 (69%), Positives = 70/85 (81%), Gaps = 2/85 (2%)
Frame = +3
Query: 1235 TTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC--MWVGQILSEMGIERISPM 1292
T+GYCV +GGNLISWKSKKQ+VVA+SSAEAEYRAMA TC +W+ Q+L E+ E + M
Sbjct: 165 TSGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQM 344
Query: 1293 KLWCDNQAALHISSNPVFHERTKHI 1317
L CDNQAALHI+SNP+FH RTKHI
Sbjct: 345 TLICDNQAALHIASNPIFH*RTKHI 419
Score = 65.1 bits (157), Expect(2) = 2e-40
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 1178 SQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTG 1237
SQF++SP HW A+ I+K K APG+G++Y D GH ++ +SDAD GSP DR
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VGSPSDRHQDIV 180
Query: 1238 Y 1238
Y
Sbjct: 181 Y 183
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 154 bits (389), Expect = 3e-37
Identities = 72/152 (47%), Positives = 108/152 (70%)
Frame = -3
Query: 881 AMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYG 940
AM+EE+ E N W LV P V+G KWV+ K++ G + R KARLVAKGY Q G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 941 VDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQG 1000
+DY +T++PVA+L +R+L++ + ++ L+Q+DVK+AFL+G +Q+EVY+EQPPGF
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1001 ECGKVCRLKKSLYGLKQSPRSWFGRFSDVVME 1032
+ V +L+K+LYGLKQ+PR+W+ R S+ ++E
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>BM086359
Length = 427
Score = 152 bits (385), Expect = 7e-37
Identities = 75/142 (52%), Positives = 99/142 (68%), Gaps = 1/142 (0%)
Frame = +1
Query: 1096 LGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKL-TAEGVPFSDPQQYR 1154
LGI+V S GI+ISQ KY LD+L ETG++ P TPM+P +KL + +G DP +
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 1155 RLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGH 1214
LVG+LNYLTVTR DI F V V+SQF+ PTD+ W A IRI++Y+K APG G++Y D G+
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLYEDKGN 360
Query: 1215 MRVEAFSDADWAGSPMDRKSTT 1236
+V + DADW GSP D+ ST+
Sbjct: 361 GKVVCYFDADWPGSPSDKSSTS 426
>BM307983
Length = 406
Score = 150 bits (380), Expect = 3e-36
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = +2
Query: 907 VGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAK-LSSVRILISLAAT 965
VGC+W+YT K D +L R KARLVAKGY QTYG+DY +TF+ K + S A
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 966 NHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGR 1025
W + Q DVKNAFLHG L++EVYME PPG+ A KVCRLKK+LYGLKQSPR+WFGR
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 1026 FSDVVMEFGLRRSE 1039
F+ ++ G ++S+
Sbjct: 362 FTQAMLSLGYKQSQ 403
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 150 bits (379), Expect = 4e-36
Identities = 76/221 (34%), Positives = 131/221 (58%), Gaps = 5/221 (2%)
Frame = +1
Query: 1149 DPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIV 1208
D ++RRL+G L YL +RP+I F VS++S+FM P +H +A R+++ +K G G++
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 1209 Y---RDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAE 1265
+ G + ++D+DW P KST GY ++ SKKQ+V+A S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 1266 YRAMAQTTC--MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHF 1323
Y A + C +W+ +L E+ + P+ L DN++A++++ +P H R+KHIE+ H+
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 1324 IREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKL 1364
IR+++ + ++ Y + +QLAD+ TK + R IC++L
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 149 bits (375), Expect = 1e-35
Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
Frame = +2
Query: 1038 SESDHTVFFKQTNKG-CILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFL 1096
SE+DH+VF+ T+ G C+ L+VYVDDI+IT D+ I LK L FQTKDL LKYFL
Sbjct: 8 SEADHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFL 187
Query: 1097 GIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTA-EGVPFSDPQQYRR 1155
GIEV S +G++ISQRKY LD+L ETG+ + ++PM+P +KL A + + DP++YRR
Sbjct: 188 GIEVAQSGDGVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRR 367
Query: 1156 LVGKLNYLTVTRPDIAF 1172
LVGKL YLT+TRPDI+F
Sbjct: 368 LVGKLIYLTITRPDISF 418
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 102 bits (254), Expect(2) = 8e-34
Identities = 49/86 (56%), Positives = 68/86 (78%), Gaps = 2/86 (2%)
Frame = +3
Query: 1218 EAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC--M 1275
+ ++DADWAGS DR+ST+GYC F+GGNL+S SKKQ+VVARSSAEAE+RA+A C +
Sbjct: 150 KGYTDADWAGSVTDRRSTSGYCTFVGGNLVS-*SKKQSVVARSSAEAEFRALAHGICETL 326
Query: 1276 WVGQILSEMGIERISPMKLWCDNQAA 1301
WV ++L E+ + P+KL+CDN++A
Sbjct: 327 WVKKLLQELKVHSSPPIKLYCDNKSA 404
Score = 61.6 bits (148), Expect(2) = 8e-34
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +1
Query: 1170 IAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVE 1218
IAF VS+VSQFM +P H EA RI++YLK +PGRG+ Y++HGH++VE
Sbjct: 7 IAFAVSMVSQFMHAPGHEHLEAAFRILRYLKGSPGRGL-YKNHGHLQVE 150
>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 437
Score = 87.0 bits (214), Expect(2) = 1e-32
Identities = 44/67 (65%), Positives = 51/67 (75%)
Frame = +2
Query: 1053 CILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQR 1112
C+ L+VYVDDIVITG+D I LK L FQTKDLG +YFLGIEV SK+GI+ISQR
Sbjct: 32 CVYLMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQSKDGIIISQR 211
Query: 1113 KYVLDML 1119
KY LD+L
Sbjct: 212 KYALDIL 232
Score = 73.2 bits (178), Expect(2) = 1e-32
Identities = 36/71 (50%), Positives = 50/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 1119 LAETGLMGSKPCETPMEPGMKLTA-EGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVV 1177
+ TG+ +P ++ M+P KL +G P+SD ++YR LVGKL YLT+TRP+I+F V VV
Sbjct: 220 IRHTGMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVV 399
Query: 1178 SQFMSSPTDAH 1188
SQFM SP + H
Sbjct: 400 SQFMQSPHNDH 432
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 136 bits (342), Expect = 7e-32
Identities = 78/186 (41%), Positives = 115/186 (60%), Gaps = 6/186 (3%)
Frame = +3
Query: 1191 ALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWK 1250
A R++KYLK P +G+ + +++ FSDADWA KS T YC FLG +LISWK
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 1251 SKKQNVVAR--SSAEAEYRAMAQTTC--MWVGQILSEMGIERISPMKLWCDNQAALH-IS 1305
+KKQN V+R SS+EA+YRA+ TTC W+ +L ++ + I +CDNQ+AL +
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHVTLI-----YCDNQSALQ*LP 362
Query: 1306 SNPVFHERTKHIEVDCHFIREKLQQNLISTSY-VRTGDQLADVFTKALNGVRNDFICNKL 1364
++H + +E+DCH +REK QQ L+ V + +QLAD+FTKAL+ +KL
Sbjct: 363 IKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKL 533
Query: 1365 GMINIY 1370
G+ +I+
Sbjct: 534 GLSDIF 551
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,818,036
Number of Sequences: 63676
Number of extensions: 1028086
Number of successful extensions: 8246
Number of sequences better than 10.0: 276
Number of HSP's better than 10.0 without gapping: 7057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7856
length of query: 1371
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1262
effective length of database: 5,698,948
effective search space: 7192072376
effective search space used: 7192072376
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0058b.2