BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.4
(457 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE346909 85 6e-17
BI468846 similar to SP|P33079|AXA5_S Auxin-induced protein 10A5.... 29 3.9
CO984152 29 5.1
TC224332 similar to UP|AX15_SOYBN (P33081) Auxin-induced protein... 29 5.1
TC220615 homologue to UP|AX6B_SOYBN (P33083) Auxin-induced prote... 29 5.1
AW396547 similar to SP|P33083|AX6B_S Auxin-induced protein 6B. [... 28 6.6
TC220451 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, parti... 28 6.6
AW597359 weakly similar to SP|P32295|ARG7_P Indole-3-acetic acid... 28 8.6
BG238116 weakly similar to SP|Q9M7Q7|PCN1_ Proliferating cellula... 28 8.6
>BE346909
Length = 435
Score = 85.1 bits (209), Expect = 6e-17
Identities = 42/69 (60%), Positives = 52/69 (74%)
Frame = +3
Query: 56 LLSSQTGLEGQLLCGSKGDEEPPLGRSRTGAKNAGQGYTFEEVKIFFLALLDLCRQISRL 115
++ S G G+ G+KG EE P GRSR G+ NAGQGYTFEEVK+ F+ L+DLCR+ + L
Sbjct: 177 VVKSDDGQTGRT--GAKGAEEVPSGRSRLGSGNAGQGYTFEEVKVLFMMLMDLCRRTAGL 350
Query: 116 QHPLPVSQV 124
QHPLPVSQV
Sbjct: 351 QHPLPVSQV 377
>BI468846 similar to SP|P33079|AXA5_S Auxin-induced protein 10A5. [Soybean]
{Glycine max}, partial (73%)
Length = 368
Score = 29.3 bits (64), Expect = 3.9
Identities = 10/39 (25%), Positives = 24/39 (60%)
Frame = +2
Query: 131 KMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISC 169
K +V+L +++ F++ +++ +E+F + P G+ I C
Sbjct: 161 KRFVILVSYLNQPSFQELLSQAEEEFGYDHPTGSLTIPC 277
>CO984152
Length = 695
Score = 28.9 bits (63), Expect = 5.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 309 LFLEGNELLVQIPQVMTAIKVLLLLEMGCQTDT 341
L L N+L +IPQ MT + L L M C T
Sbjct: 609 LDLSNNKLFGEIPQTMTTLSFLSYLNMSCNNFT 511
>TC224332 similar to UP|AX15_SOYBN (P33081) Auxin-induced protein 15A,
partial (98%)
Length = 525
Score = 28.9 bits (63), Expect = 5.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 131 KMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISC 169
K +V+ + F+D ++K +E++ +H P G I C
Sbjct: 196 KRFVIQIECLNQPSFQDLLSKAEEEYGYHHPMGGLTIPC 312
>TC220615 homologue to UP|AX6B_SOYBN (P33083) Auxin-induced protein 6B,
complete
Length = 523
Score = 28.9 bits (63), Expect = 5.1
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 131 KMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISC 169
+ +V+ +++ F+D +++ +E+F +H P G I C
Sbjct: 175 RRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPC 291
>AW396547 similar to SP|P33083|AX6B_S Auxin-induced protein 6B. [Soybean]
{Glycine max}, partial (96%)
Length = 383
Score = 28.5 bits (62), Expect = 6.6
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 131 KMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISC 169
K +V+ +++ + F+D +++ +E+F + P G I C
Sbjct: 108 KRFVIPISYLTQFSFQDLLSQAEEEFGYDHPMGGLTIPC 224
>TC220451 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (9%)
Length = 501
Score = 28.5 bits (62), Expect = 6.6
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -2
Query: 78 PLGRSRTGAKNAGQGYTFEEVKIFFLA----LLDLCRQISRLQHPLPVSQVDFIHLTKMY 133
PLG + Q FE + FF + L +L Q L+HPLPV V + L +
Sbjct: 215 PLGSNHMEGNRESQ---FEMILCFFPSGETPLYNLQHQACHLEHPLPV--VHHLQLQRRL 51
Query: 134 VVLQA-WIQHWE 144
QA W+Q +E
Sbjct: 50 PFFQALWLQPFE 15
>AW597359 weakly similar to SP|P32295|ARG7_P Indole-3-acetic acid induced
protein ARG7. [Mung bean Vigna radiata] {Phaseolus
aureus}, partial (85%)
Length = 398
Score = 28.1 bits (61), Expect = 8.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 131 KMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISC 169
K +V+ +++ H F+D ++ +E+F ++ P G I C
Sbjct: 216 KRFVIPISYLSHPLFRDLLDWAEEEFGFNHPMGGLTIPC 332
>BG238116 weakly similar to SP|Q9M7Q7|PCN1_ Proliferating cellular nuclear
antigen 1 (PCNA 1). [Mouse-ear cress] {Arabidopsis
thaliana}, partial (22%)
Length = 544
Score = 28.1 bits (61), Expect = 8.6
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Frame = +2
Query: 317 LVQIPQVMTAIKVLLLLEMGCQTDTWNPGGCSDLTATTWPTSFQQWDPGGGFYCPYPDNA 376
L + + A+ LLL G WNP LT TW + PG + PY
Sbjct: 107 LKALNSTLCALVPLLLRPEGFNPYRWNPITSWGLTLNTWARILR--SPGKNNFLPYKAVT 280
Query: 377 G-----KWIKG 382
G W KG
Sbjct: 281 GANPLLSWFKG 313
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,773,705
Number of Sequences: 63676
Number of extensions: 354437
Number of successful extensions: 1532
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of query: 457
length of database: 12,639,632
effective HSP length: 100
effective length of query: 357
effective length of database: 6,272,032
effective search space: 2239115424
effective search space used: 2239115424
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0058a.4